mRNA_H-canaliculatus_F_contig14659.3572.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14659.3572.1
Unique NamemRNA_H-canaliculatus_F_contig14659.3572.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14659.3572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14659contigH-canaliculatus_F_contig14659:23..374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929213.1256182-UTR-H-canaliculatus_F_contig14659:22..561622929213.1256182-UTR-H-canaliculatus_F_contig14659:22..56Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14659 23..56 +
1696845720.258035-UTR-H-canaliculatus_F_contig14659:22..561696845720.258035-UTR-H-canaliculatus_F_contig14659:22..56Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14659 23..56 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929213.1375985-CDS-H-canaliculatus_F_contig14659:56..3741622929213.1375985-CDS-H-canaliculatus_F_contig14659:56..374Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14659 57..374 +
1696845720.267138-CDS-H-canaliculatus_F_contig14659:56..3741696845720.267138-CDS-H-canaliculatus_F_contig14659:56..374Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14659 57..374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14659.3572.1prot_H-canaliculatus_F_contig14659.3572.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14659 57..374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14659.3572.1

>prot_H-canaliculatus_F_contig14659.3572.1 ID=prot_H-canaliculatus_F_contig14659.3572.1|Name=mRNA_H-canaliculatus_F_contig14659.3572.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=106bp
MGSRSYICSALGVMKPLAPESAYHFSLPTGLRWRPTSPELHMNAEGTRLT
TPVHARSSHTLSTLPVGIDSYPLASSGMGGVGSGTFTNSGREDVGSGTLP
DSGESL
back to top

mRNA from alignment at H-canaliculatus_F_contig14659:23..374+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14659.3572.1 ID=mRNA_H-canaliculatus_F_contig14659.3572.1|Name=mRNA_H-canaliculatus_F_contig14659.3572.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=352bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14659:23..374+ (Hapterophycus canaliculatus Oshoro5f female)
ATTCCCTACTTGAAAATATTGCTGTCCCGGAGGAATGGGCTCGAGGTCGT
ACATATGTTCCGCACTCGGGGTGATGAAACCGCTGGCACCAGAATCAGCA
TACCATTTTTCGCTGCCTACGGGGCTGAGGTGGCGACCAACAAGTCCAGA
ATTGCACATGAACGCAGAGGGCACACGACTCACAACACCAGTACACGCGA
GATCATCACACACACTCTCCACACTCCCAGTTGGCATAGACTCATATCCC
CTCGCATCCTCGGGAATGGGTGGCGTAGGGTCAGGCACATTCACAAACTC
GGGTAGGGAAGACGTAGGCTCAGGAACACTCCCAGATTCGGGGGAAAGCT
TA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14659:23..374+

>mRNA_H-canaliculatus_F_contig14659.3572.1 ID=mRNA_H-canaliculatus_F_contig14659.3572.1|Name=mRNA_H-canaliculatus_F_contig14659.3572.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=636bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14659:23..374+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCTCGAGGTCGTACATATGTTCCGCACTCGGGGTGATGAAACCGCT
GGCACCAGAATCAGCATACCATTTTTCGCTGCCTACGGGGCTGAGGTGGC
GACCAACAAGTCCAGAATTGCACATGAACGCAGAGGGCACACGACTCACA
ACACCAGTACACGCGAGATCATCACACACACTCTCCACACTCCCAGTTGG
CATAGACTCATATCCCCTCGCATCCTCGGGAATGGGTGGCGTAGGGTCAG
GCACATTCACAAACTCGGGTAGGGAAGACGTAGGCTCAGGAACACTCCCA
GATTCGGGGGAAAGCTTAATGGGCTCGAGGTCGTACATATGTTCCGCACT
CGGGGTGATGAAACCGCTGGCACCAGAATCAGCATACCATTTTTCGCTGC
CTACGGGGCTGAGGTGGCGACCAACAAGTCCAGAATTGCACATGAACGCA
GAGGGCACACGACTCACAACACCAGTACACGCGAGATCATCACACACACT
CTCCACACTCCCAGTTGGCATAGACTCATATCCCCTCGCATCCTCGGGAA
TGGGTGGCGTAGGGTCAGGCACATTCACAAACTCGGGTAGGGAAGACGTA
GGCTCAGGAACACTCCCAGATTCGGGGGAAAGCTTA
back to top