mRNA_H-canaliculatus_F_contig1465.3568.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1465.3568.1
Unique NamemRNA_H-canaliculatus_F_contig1465.3568.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1465.3568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1465contigH-canaliculatus_F_contig1465:14018..16085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1905
Cds size996
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1465.3568.1prot_H-canaliculatus_F_contig1465.3568.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1465 14735..15730 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929212.6303926-UTR-H-canaliculatus_F_contig1465:14017..147341622929212.6303926-UTR-H-canaliculatus_F_contig1465:14017..14734Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1465 14018..14734 +
1696845720.051008-UTR-H-canaliculatus_F_contig1465:14017..147341696845720.051008-UTR-H-canaliculatus_F_contig1465:14017..14734Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1465 14018..14734 +
1622929212.6705189-UTR-H-canaliculatus_F_contig1465:15730..158751622929212.6705189-UTR-H-canaliculatus_F_contig1465:15730..15875Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1465 15731..15875 +
1696845720.069296-UTR-H-canaliculatus_F_contig1465:15730..158751696845720.069296-UTR-H-canaliculatus_F_contig1465:15730..15875Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1465 15731..15875 +
1622929212.684784-UTR-H-canaliculatus_F_contig1465:16038..160851622929212.684784-UTR-H-canaliculatus_F_contig1465:16038..16085Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1465 16039..16085 +
1696845720.0779848-UTR-H-canaliculatus_F_contig1465:16038..160851696845720.0779848-UTR-H-canaliculatus_F_contig1465:16038..16085Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1465 16039..16085 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929212.6415756-CDS-H-canaliculatus_F_contig1465:14734..157301622929212.6415756-CDS-H-canaliculatus_F_contig1465:14734..15730Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1465 14735..15730 +
1696845720.0603669-CDS-H-canaliculatus_F_contig1465:14734..157301696845720.0603669-CDS-H-canaliculatus_F_contig1465:14734..15730Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1465 14735..15730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1465.3568.1

>prot_H-canaliculatus_F_contig1465.3568.1 ID=prot_H-canaliculatus_F_contig1465.3568.1|Name=mRNA_H-canaliculatus_F_contig1465.3568.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=332bp
MMNTQSSDGDENTHLRGRAEPFLSRRVARLRPSTLPHRPRNHQNTTFIIR
TEYLPTNSLAPPRFSPGPYESIFRSYSRPLHEGVERNNIASRRERVVITP
LPHKRAGAVRPTAGAACAVGPAWGPGRLAVGEEETSGGGGNGGVRGGRRA
VQTTASETEKPPAAAAVVEQPELVLPCGGQLVEPGGGRAGRLRRKREDQG
SRGDAPGSCLRRRRRGGTRRGHRQTCARAVGREVTLPELLVRVVIALPVQ
QRLQERALSCKAVVLTRDGEEGDRSRERGRHRRRHLHRPALPSSPMPRQR
HSRHRGRAGIVHVPVEREVRRRQRSAAVDTT*
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mRNA from alignment at H-canaliculatus_F_contig1465:14018..16085+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1465.3568.1 ID=mRNA_H-canaliculatus_F_contig1465.3568.1|Name=mRNA_H-canaliculatus_F_contig1465.3568.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2068bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1465:14018..16085+ (Hapterophycus canaliculatus Oshoro5f female)
TGCCCGCAAAATGCAGAACGATAAAAAACCATGCATCGTGGGGGGAGGGT
CACCACAATCCGGTAGGAACCGAGCGCGGCGTGTTCGATGAGGACGACGA
CAACAACAACAACAGCATCCGTCCCCACAGAACAAAAACGGGACGTCGAC
AACAGCGCACGCTTTGCTAGATGTTGCCGACAAACAGAAAGAGATCTCGC
ATGGACGGAGCACGTACGAAATGACCGCGGTGACAAGCGCACGTTGCGTC
TTCTTCATGCCAACACGACGATGTAGAGAATCAATTTAACAGCGTCCAGA
ATCTTGAAGGAGCTTATTTCAACATCTCGCTGAAAAAAAAACGTACCATG
AAAAAAGCCCGTGAGTTTAAGTAAGTGCACGTGCACAATTCTACGAATAC
CGGAAGCACTGTTATTTTCCTCGTCGATTCAAACCTCTTACTCGGCCCCG
TTCACCCTCCAGCAAACGCCACCTCTCCCTAGTGTATCATCAGGGTCGCC
GTTGTCGTCGCCCATGGGCCCACGAAATAAGAACGAAGACGCGCGAACAT
GCTCTCTCTCTACCTGATCAGTCTCCCTCGCCGCAGTGTGTCTCTATGCG
CCACCCAAGAGAGACAAGCCAAGCCCGCCCCGTCTACACAAGAAGAAGAA
GAAATGCTTTCCATTCAAAACAACACGCCGCAAACGCCCGTTCTATATCT
CGCATGTCGAGCTACAAATGATGAACACGCAATCAAGCGATGGGGACGAG
AACACGCACTTACGAGGCCGGGCAGAGCCGTTTCTGAGCCGAAGAGTGGC
TCGGCTCCGCCCGTCCACGCTACCGCACCGACCGCGCAACCATCAGAACA
CAACATTTATCATCAGAACAGAATATTTACCCACCAACAGCCTCGCGCCC
CCAAGATTCTCCCCAGGACCGTACGAATCAATCTTCCGCTCGTATTCTCG
TCCGCTACATGAGGGGGTCGAGCGCAACAACATCGCCAGCCGACGCGAAC
GGGTGGTCATCACACCCCTCCCCCACAAACGAGCCGGAGCCGTGCGTCCT
ACCGCCGGGGCCGCTTGCGCCGTTGGCCCCGCCTGGGGGCCAGGCCGGCT
GGCCGTGGGAGAAGAGGAAACCAGCGGCGGGGGGGGTAACGGCGGTGTTC
GCGGCGGTCGTCGCGCCGTTCAGACCACCGCCTCCGAGACCGAAAAGCCC
CCCGCCGCCGCCGCCGTTGTCGAACAGCCCGAGCTGGTCCTGCCATGTGG
CGGTCAACTCGTCGAACCTGGGGGGGGGCGCGCCGGCCGACTTCGCCGAA
AACGGGAGGACCAAGGGAGCAGGGGAGACGCTCCCGGGTCGTGCCTGCGA
CGGAGACGCCGAGGGGGCACCAGACGGGGGCACCGCCAGACTTGCGCCCG
CGCGGTGGGTCGGGAGGTGACCCTGCCGGAGTTGCTTGTGCGTGTGGTGA
TCGCGCTGCCAGTGCAGCAACGGCTGCAAGAACGCGCTCTGAGCTGCAAG
GCGGTGGTGCTGACCCGGGACGGCGAGGAGGGAGATCGGTCTCGCGAGCG
AGGGCGACATCGGCGTCGGCATCTGCATCGACCCGCACTGCCCAGCAGCC
CGATGCCGAGGCAGCGGCACTCCCGCCACCGCGGGCGGGCGGGAATTGTT
CACGTTCCCGTAGAACGTGAGGTGCGACGCCGCCAGAGGTCCGCAGCCGT
CGACACCACTTGACGCAGGTCTTCCCCATTCTCTTCCTCCTCCGCCTCCG
TACAAGGCGCTCCCGATGCTTGCGCCAGCCCGCCTGCCGCTTCCCCTCCC
ATCTCTCCCGGCGGTGCTGCCGCTTCTCCGGGGGCGAGGGGCGGTTCCGC
CACCGCCGCCCCCGGCGCGGCCGCTGTTGCCGTCGCCGCCGCTGCTGCCG
CCACCGTTGCTGCCGCCGCCGCCGCCGCTGCTACTGCCGCCGCTGCTGTG
CCGGTCGGAGCGCTCCTCCGAGGTGGTCTCGCCGCGGTCGTTGTCGCCGC
CGTGCCTGCTGCCGGGGGCAACCGTCGGGGCTGGAGGGGGGGACGAACAG
GAGGCGGCGCTGTCCGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1465:14018..16085+

>mRNA_H-canaliculatus_F_contig1465.3568.1 ID=mRNA_H-canaliculatus_F_contig1465.3568.1|Name=mRNA_H-canaliculatus_F_contig1465.3568.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1992bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1465:14018..16085+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATGAACACGCAATCAAGCGATGGGGACGAGAACACGCACTTACGAGG
CCGGGCAGAGCCGTTTCTGAGCCGAAGAGTGGCTCGGCTCCGCCCGTCCA
CGCTACCGCACCGACCGCGCAACCATCAGAACACAACATTTATCATCAGA
ACAGAATATTTACCCACCAACAGCCTCGCGCCCCCAAGATTCTCCCCAGG
ACCGTACGAATCAATCTTCCGCTCGTATTCTCGTCCGCTACATGAGGGGG
TCGAGCGCAACAACATCGCCAGCCGACGCGAACGGGTGGTCATCACACCC
CTCCCCCACAAACGAGCCGGAGCCGTGCGTCCTACCGCCGGGGCCGCTTG
CGCCGTTGGCCCCGCCTGGGGGCCAGGCCGGCTGGCCGTGGGAGAAGAGG
AAACCAGCGGCGGGGGGGGTAACGGCGGTGTTCGCGGCGGTCGTCGCGCC
GTTCAGACCACCGCCTCCGAGACCGAAAAGCCCCCCGCCGCCGCCGCCGT
TGTCGAACAGCCCGAGCTGGTCCTGCCATGTGGCGGTCAACTCGTCGAAC
CTGGGGGGGGGCGCGCCGGCCGACTTCGCCGAAAACGGGAGGACCAAGGG
AGCAGGGGAGACGCTCCCGGGTCGTGCCTGCGACGGAGACGCCGAGGGGG
CACCAGACGGGGGCACCGCCAGACTTGCGCCCGCGCGGTGGGTCGGGAGG
TGACCCTGCCGGAGTTGCTTGTGCGTGTGGTGATCGCGCTGCCAGTGCAG
CAACGGCTGCAAGAACGCGCTCTGAGCTGCAAGGCGGTGGTGCTGACCCG
GGACGGCGAGGAGGGAGATCGGTCTCGCGAGCGAGGGCGACATCGGCGTC
GGCATCTGCATCGACCCGCACTGCCCAGCAGCCCGATGCCGAGGCAGCGG
CACTCCCGCCACCGCGGGCGGGCGGGAATTGTTCACGTTCCCGTAGAACG
TGAGGTGCGACGCCGCCAGAGGTCCGCAGCCGTCGACACCACTTGAATGA
TGAACACGCAATCAAGCGATGGGGACGAGAACACGCACTTACGAGGCCGG
GCAGAGCCGTTTCTGAGCCGAAGAGTGGCTCGGCTCCGCCCGTCCACGCT
ACCGCACCGACCGCGCAACCATCAGAACACAACATTTATCATCAGAACAG
AATATTTACCCACCAACAGCCTCGCGCCCCCAAGATTCTCCCCAGGACCG
TACGAATCAATCTTCCGCTCGTATTCTCGTCCGCTACATGAGGGGGTCGA
GCGCAACAACATCGCCAGCCGACGCGAACGGGTGGTCATCACACCCCTCC
CCCACAAACGAGCCGGAGCCGTGCGTCCTACCGCCGGGGCCGCTTGCGCC
GTTGGCCCCGCCTGGGGGCCAGGCCGGCTGGCCGTGGGAGAAGAGGAAAC
CAGCGGCGGGGGGGGTAACGGCGGTGTTCGCGGCGGTCGTCGCGCCGTTC
AGACCACCGCCTCCGAGACCGAAAAGCCCCCCGCCGCCGCCGCCGTTGTC
GAACAGCCCGAGCTGGTCCTGCCATGTGGCGGTCAACTCGTCGAACCTGG
GGGGGGGCGCGCCGGCCGACTTCGCCGAAAACGGGAGGACCAAGGGAGCA
GGGGAGACGCTCCCGGGTCGTGCCTGCGACGGAGACGCCGAGGGGGCACC
AGACGGGGGCACCGCCAGACTTGCGCCCGCGCGGTGGGTCGGGAGGTGAC
CCTGCCGGAGTTGCTTGTGCGTGTGGTGATCGCGCTGCCAGTGCAGCAAC
GGCTGCAAGAACGCGCTCTGAGCTGCAAGGCGGTGGTGCTGACCCGGGAC
GGCGAGGAGGGAGATCGGTCTCGCGAGCGAGGGCGACATCGGCGTCGGCA
TCTGCATCGACCCGCACTGCCCAGCAGCCCGATGCCGAGGCAGCGGCACT
CCCGCCACCGCGGGCGGGCGGGAATTGTTCACGTTCCCGTAGAACGTGAG
GTGCGACGCCGCCAGAGGTCCGCAGCCGTCGACACCACTTGA
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