mRNA_H-canaliculatus_F_contig1463.3562.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1463.3562.1
Unique NamemRNA_H-canaliculatus_F_contig1463.3562.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1463.3562.1 vs. uniprot
Match: D8LEY4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEY4_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 6.200e-43
Identity = 96/125 (76.80%), Postives = 106/125 (84.80%), Query Frame = 1 
Query:    1 MAQFLIRIVNHFASEIITKRLANSRAFQQLALKTHLKVEQTKK-MAENPEEAAKLMRGAGEMAKAEVESVATSFERFKAALKEEVSQGVGGGTGXXXXXXXXXXXXVGGGLNSDIAARVQQRRRR 372
            MAQFLI+IVNHFASEIITKRLANSRAFQQ A+KTHLKVEQTKK +A+NP EAAKLMRGAGE  KAEV+SVA+SFERFKAALK+EV+QG      XXXXXXXXX     G  + DIAARVQ+RRRR
Sbjct:    1 MAQFLIKIVNHFASEIITKRLANSRAFQQFAMKTHLKVEQTKKKVADNPGEAAKLMRGAGEKVKAEVDSVASSFERFKAALKKEVAQGXXXXXXXXXXXXXXXSVPRNGSRSDDIAARVQRRRRR 125
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BLAST of mRNA_H-canaliculatus_F_contig1463.3562.1 vs. uniprot
Match: A0A836CNG9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNG9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.780e-8
Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 1 
Query:    1 MAQFLIRIVNHFASEIITKRLANSRAFQQLALKTHLKVEQTKKMAENPEEAAKLMRGAGEMA-----KAEVESVATSF----ERFKAALKEEVSQGV 264
            M     +I+NHFASE+ITKRLA S+ FQ +ALKTH  V++ +    +P+   +L + A ++A     K  V   A+SF     RF+ AL EE+++ +
Sbjct:    1 MNALFTKIINHFASEMITKRLAQSKTFQDMALKTHQHVQKGRGAINDPKLQQELYKEASKVASQVVSKEAVSQKASSFGQTLSRFRRALGEEINKDI 97
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BLAST of mRNA_H-canaliculatus_F_contig1463.3562.1 vs. uniprot
Match: F0W759_9STRA (Uncharacterized protein AlNc14C28G2688 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W759_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.240e-5
Identity = 32/83 (38.55%), Postives = 46/83 (55.42%), Query Frame = 1 
Query:   10 FLIRIVNHFASEIITKRLANSRAFQQLALKTHLKVEQTKKMAENPEEAAKLMRGAGEMAKAEVESVATSFERFKAALKEEVSQ 258
            FL R V HF +++  K LAN+RAFQQ ALKTH +V   K +A           GAG + +   +  A   + F  ALK+E+++
Sbjct:   20 FLQRFVAHFINDVAVKALANNRAFQQFALKTHYRVNDVKNIASE---------GAGNLVET-WKRTAPRVQEFTEALKQEIAR 92
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BLAST of mRNA_H-canaliculatus_F_contig1463.3562.1 vs. uniprot
Match: A0A5D6Y091_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y091_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 6.730e-5
Identity = 30/83 (36.14%), Postives = 46/83 (55.42%), Query Frame = 1 
Query:   10 FLIRIVNHFASEIITKRLANSRAFQQLALKTHLKVEQTKKMAENPEEAAKLMRGAGEMAKAEVESVATSFERFKAALKEEVSQ 258
            F  R+V++  +++  K LAN+RAFQ+ ALKTH +VE  K +A           GA       +E  A   + F +ALKEE+++
Sbjct:    3 FFQRLVSYVVNDVAVKALANNRAFQRFALKTHYRVEDAKSIANE---------GASSFLST-LERAAPKVKEFSSALKEEIAR 75
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BLAST of mRNA_H-canaliculatus_F_contig1463.3562.1 vs. uniprot
Match: K3WIU1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIU1_GLOUD)

HSP 1 Score: 47.8 bits (112), Expect = 9.470e-5
Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:   10 FLIRIVNHFASEIITKRLANSRAFQQLALKTHLKVEQTKKMAENPEEAAKLMRGAGEMAKAEVESVATSFERFKAALKEEVSQ 258
            F  R+V++  +++  K LAN+RAFQ+ ALKTH +VE  K  AE          GA     + +E      ++F +ALKEE+++
Sbjct:    3 FFQRLVSYVVNDVAVKALANNRAFQRFALKTHHRVEDAKNFAET---------GASTFLSS-IEKELPKVKQFSSALKEEIAK 75
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BLAST of mRNA_H-canaliculatus_F_contig1463.3562.1 vs. uniprot
Match: A0A2D4CAV5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAV5_PYTIN)

HSP 1 Score: 47.8 bits (112), Expect = 9.470e-5
Identity = 30/83 (36.14%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:   10 FLIRIVNHFASEIITKRLANSRAFQQLALKTHLKVEQTKKMAENPEEAAKLMRGAGEMAKAEVESVATSFERFKAALKEEVSQ 258
            F  R+V++  +++  K LANSRAFQ+ ALKTH  VE  K +A           GA  ++ A ++  A   + F +ALK+E+++
Sbjct:    3 FFQRLVSYVVNDVAVKTLANSRAFQRFALKTHYHVEDAKHLAST---------GAESLSSA-IQKNAPKVKEFASALKDEIAR 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1463.3562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LEY4_ECTSI6.200e-4376.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CNG9_9STRA2.780e-839.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0W759_9STRA1.240e-538.55Uncharacterized protein AlNc14C28G2688 n=1 Tax=Alb... [more]
A0A5D6Y091_9STRA6.730e-536.14Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WIU1_GLOUD9.470e-536.14Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4CAV5_PYTIN9.470e-536.14Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1463contigH-canaliculatus_F_contig1463:20036..21441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_006020.1
Exons3
Model size375
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1463.3562.1prot_H-canaliculatus_F_contig1463.3562.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1463 20036..21441 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929212.124355-CDS-H-canaliculatus_F_contig1463:20035..200931622929212.124355-CDS-H-canaliculatus_F_contig1463:20035..20093Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1463 20036..20093 -
1696845719.8140326-CDS-H-canaliculatus_F_contig1463:20035..200931696845719.8140326-CDS-H-canaliculatus_F_contig1463:20035..20093Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1463 20036..20093 -
1622929212.1387322-CDS-H-canaliculatus_F_contig1463:20132..203381622929212.1387322-CDS-H-canaliculatus_F_contig1463:20132..20338Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1463 20133..20338 -
1696845719.8236291-CDS-H-canaliculatus_F_contig1463:20132..203381696845719.8236291-CDS-H-canaliculatus_F_contig1463:20132..20338Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1463 20133..20338 -
1622929212.1523566-CDS-H-canaliculatus_F_contig1463:21330..214411622929212.1523566-CDS-H-canaliculatus_F_contig1463:21330..21441Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1463 21331..21441 -
1696845719.8343713-CDS-H-canaliculatus_F_contig1463:21330..214411696845719.8343713-CDS-H-canaliculatus_F_contig1463:21330..21441Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1463 21331..21441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1463.3562.1

>prot_H-canaliculatus_F_contig1463.3562.1 ID=prot_H-canaliculatus_F_contig1463.3562.1|Name=mRNA_H-canaliculatus_F_contig1463.3562.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=125bp
MAQFLIRIVNHFASEIITKRLANSRAFQQLALKTHLKVEQTKKMAENPEE
AAKLMRGAGEMAKAEVESVATSFERFKAALKEEVSQGVGGGTGGTAARSS
GGGNPVGGGLNSDIAARVQQRRRR*
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mRNA from alignment at H-canaliculatus_F_contig1463:20036..21441-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1463.3562.1 ID=mRNA_H-canaliculatus_F_contig1463.3562.1|Name=mRNA_H-canaliculatus_F_contig1463.3562.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1406bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1463:20036..21441- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCTCAATTTCTGATCAGAATCGTGAACCACTTCGCGAGCGAGATCAT
TACCAAGCGCCTTGCTAACTCTCGGGCTTTCCAGCAGCTCGCCTTGAAGA
CTCACTTGAAGGTGAGGGAGAGAGGGAGACGTGGTGAACCGAAGGAAGGA
GGGTAGGATGAAGAGAGATTATCCGTGTGTTGGCACGTGTGGTGAGCCGG
CCTTCTGTTGACCTCGGTTTGATCTCCACTCTCCACTGCATTTATTTGTC
CCGACAGCGGCCTTTCACCCGGCGGTTCCTCTTTCCCGAAACGACCTTGC
AACTTCCAACCCCCCATCCGTGTGAAGCAGACTCGTTGCAATAGGTATGA
CTCATGGTGGCGAAATGCCCCGGGATGAGACCTTCATGCCTGTGTCCGCC
GCCCGTGCTCCGTGCAGTTGTTGCTACAACGTGCACAGCCAAGCGTGCGG
TCGACCCCCATTTTTCTCGATCCGAATCAACGCTAGAAGTCGAAGTCCAC
ATGTACATGTTGTGCTGGGCCACAGGGCCGCCGGCTGCTCGTTTTACCGG
GGGGACGTCGTGCGTTTCGATGTTGTTGTTGTTCCCGATAGTTCTCGAGA
CGAAGTAGCCGTCACGTTCTACTTGGCGCCGTTTGATCCTGCGACGTTTC
TTTACAGCTCATCGGGAATTTGAAATTTGCATTTCCGGGCGGCGCTCGCC
TCAAGTCTTCGCAGGATGTGCACATTCTCCGAGCTCCTCTCTTCGGTACA
AATCATGAAGAGCTAAGCCACCAGCGCCCGATCCACATCCTAGACGGCGC
GAGCGGGCGCGGTCTCGTCCCGCTGCAATCAATTCACCCATGAACAAGAT
AGCAGTGCCTTCCCCCCCCCCCGCATCGCACCGACTTTTGGACCATCGAA
AAAATTGAAGAAAATTGGCAAAAACCCTGAAGCTGGGGAATCAATCGGAC
ACGCGAAGCACAGGCGCCAACGAAGTGACGGGACGACACGGCGAGCGGTC
TTGACACCGTCTCAATCCAACCCCTTCCCCTACCCCCTCTTGCGGGCGCC
GCTTGACCCTCTCTTAAACCTCCGCTACTTTTCTGCACGGTTCAAACCAA
CAGGTTGAGCAAACGAAAAAGATGGCCGAAAACCCCGAGGAGGCGGCCAA
GCTCATGCGGGGAGCGGGAGAGATGGCGAAGGCGGAGGTGGAGTCGGTGG
CAACCAGCTTCGAGCGTTTCAAGGCAGCGCTCAAAGAGGAGGTTTCTCAA
GGGGTGGGAGGAGGCACCGGCGGGACCGCTGCCAGAAGTAGTGGGGGAGG
AAATCCAGTGTCAAGCACCGCCCCAAAGAGCCGCCGGACAAGCGCGAGCG
GCGGTGGGCTCAACAGCGACATAGCTGCACGCGTACAACAACGGCGCCGA
AGATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1463:20036..21441-

>mRNA_H-canaliculatus_F_contig1463.3562.1 ID=mRNA_H-canaliculatus_F_contig1463.3562.1|Name=mRNA_H-canaliculatus_F_contig1463.3562.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=750bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1463:20036..21441- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCTCAATTTCTGATCAGAATCGTGAACCACTTCGCGAGCGAGATCAT
TACCAAGCGCCTTGCTAACTCTCGGGCTTTCCAGCAGCTCGCCTTGAAGA
CTCACTTGAAGATGGCTCAATTTCTGATCAGAATCGTGAACCACTTCGCG
AGCGAGATCATTACCAAGCGCCTTGCTAACTCTCGGGCTTTCCAGCAGCT
CGCCTTGAAGACTCACTTGAAGGTTGAGCAAACGAAAAAGATGGCCGAAA
ACCCCGAGGAGGCGGCCAAGCTCATGCGGGGAGCGGGAGAGATGGCGAAG
GCGGAGGTGGAGTCGGTGGCAACCAGCTTCGAGCGTTTCAAGGCAGCGCT
CAAAGAGGAGGTTTCTCAAGGGGTGGGAGGAGGCACCGGCGGGACCGCTG
CCAGAAGTAGTGGGGGAGGAAATCCAGTGTTGAGCAAACGAAAAAGATGG
CCGAAAACCCCGAGGAGGCGGCCAAGCTCATGCGGGGAGCGGGAGAGATG
GCGAAGGCGGAGGTGGAGTCGGTGGCAACCAGCTTCGAGCGTTTCAAGGC
AGCGCTCAAAGAGGAGGTTTCTCAAGGGGTGGGAGGAGGCACCGGCGGGA
CCGCTGCCAGAAGTAGTGGGGGAGGAAATCCAGTCGGCGGTGGGCTCAAC
AGCGACATAGCTGCACGCGTACAACAACGGCGCCGAAGATGACGGCGGTG
GGCTCAACAGCGACATAGCTGCACGCGTACAACAACGGCGCCGAAGATGA
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