mRNA_H-canaliculatus_F_contig1463.3560.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1463.3560.1
Unique NamemRNA_H-canaliculatus_F_contig1463.3560.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1463.3560.1 vs. uniprot
Match: D8LEY7_ECTSI (C3H1-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY7_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.460e-9
Identity = 37/54 (68.52%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:  271 PCRFYARGLCAKGKACPFFHAPHTAQAPATPTAAVAAENSGRTKTYPAPNTLRG 432
            PCRFYARGLC KGKACPFFHAP   QAPA  TA    E+S R    PAP TLRG
Sbjct:   69 PCRFYARGLCTKGKACPFFHAPSAQQAPAERTAP---ESSRR----PAPTTLRG 115
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BLAST of mRNA_H-canaliculatus_F_contig1463.3560.1 vs. uniprot
Match: A0A6H5L3Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 8.530e-8
Identity = 32/54 (59.26%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:  271 PCRFYARGLCAKGKACPFFHAPHTAQAPATPTAAVAAENSGRTKTYPAPNTLRG 432
            PCRFYARGLC KG+ACPFFHAP   Q PA  TA  ++         PAP TLRG
Sbjct:  165 PCRFYARGLCTKGRACPFFHAPSAQQVPAERTAPESSWG-------PAPTTLRG 211
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1463.3560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEY7_ECTSI1.460e-968.52C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L3Y8_9PHAE8.530e-859.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1463contigH-canaliculatus_F_contig1463:6957..7388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_006050.1
Hectar predicted targeting categoryother localisation
Exons1
Model size433
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929211.9752817-CDS-H-canaliculatus_F_contig1463:6956..73881622929211.9752817-CDS-H-canaliculatus_F_contig1463:6956..7388Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1463 6957..7388 +
1696845719.75503-CDS-H-canaliculatus_F_contig1463:6956..73881696845719.75503-CDS-H-canaliculatus_F_contig1463:6956..7388Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1463 6957..7388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1463.3560.1prot_H-canaliculatus_F_contig1463.3560.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1463 6957..7388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1463.3560.1

>prot_H-canaliculatus_F_contig1463.3560.1 ID=prot_H-canaliculatus_F_contig1463.3560.1|Name=mRNA_H-canaliculatus_F_contig1463.3560.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=144bp
GYTCDGRCNLRHPSAAELAALAASPPPTPPATRVPMASRATPSWQQLAVK
QQQQQRAGMAQNSPSSAPAPAPPAATPAAAAAAAAPAAAPPCRFYARGLC
AKGKACPFFHAPHTAQAPATPTAAVAAENSGRTKTYPAPNTLRG
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mRNA from alignment at H-canaliculatus_F_contig1463:6957..7388+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1463.3560.1 ID=mRNA_H-canaliculatus_F_contig1463.3560.1|Name=mRNA_H-canaliculatus_F_contig1463.3560.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=432bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1463:6957..7388+ (Hapterophycus canaliculatus Oshoro5f female)
GGGTACACGTGCGACGGCAGGTGTAACCTCCGGCACCCGTCCGCCGCGGA
ACTCGCCGCTCTCGCCGCGTCGCCCCCGCCGACACCCCCAGCCACGCGGG
TACCGATGGCTTCCCGCGCTACTCCGTCGTGGCAGCAGTTGGCAGTTAAG
CAGCAGCAGCAGCAGCGTGCAGGTATGGCCCAGAATTCACCGTCGTCGGC
GCCAGCACCGGCACCACCAGCAGCAACACCGGCGGCGGCGGCGGCGGCGG
CGGCTCCGGCAGCAGCCCCTCCGTGTCGGTTTTACGCGAGAGGGCTCTGC
GCCAAGGGTAAGGCGTGCCCATTCTTCCACGCCCCTCACACCGCGCAAGC
GCCGGCGACACCGACAGCAGCGGTGGCGGCGGAGAACAGCGGCCGCACGA
AGACGTACCCCGCCCCCAACACCCTTCGAGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1463:6957..7388+

>mRNA_H-canaliculatus_F_contig1463.3560.1 ID=mRNA_H-canaliculatus_F_contig1463.3560.1|Name=mRNA_H-canaliculatus_F_contig1463.3560.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=864bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1463:6957..7388+ (Hapterophycus canaliculatus Oshoro5f female)
GGGTACACGTGCGACGGCAGGTGTAACCTCCGGCACCCGTCCGCCGCGGA
ACTCGCCGCTCTCGCCGCGTCGCCCCCGCCGACACCCCCAGCCACGCGGG
TACCGATGGCTTCCCGCGCTACTCCGTCGTGGCAGCAGTTGGCAGTTAAG
CAGCAGCAGCAGCAGCGTGCAGGTATGGCCCAGAATTCACCGTCGTCGGC
GCCAGCACCGGCACCACCAGCAGCAACACCGGCGGCGGCGGCGGCGGCGG
CGGCTCCGGCAGCAGCCCCTCCGTGTCGGTTTTACGCGAGAGGGCTCTGC
GCCAAGGGTAAGGCGTGCCCATTCTTCCACGCCCCTCACACCGCGCAAGC
GCCGGCGACACCGACAGCAGCGGTGGCGGCGGAGAACAGCGGCCGCACGA
AGACGTACCCCGCCCCCAACACCCTTCGAGGCGGGTACACGTGCGACGGC
AGGTGTAACCTCCGGCACCCGTCCGCCGCGGAACTCGCCGCTCTCGCCGC
GTCGCCCCCGCCGACACCCCCAGCCACGCGGGTACCGATGGCTTCCCGCG
CTACTCCGTCGTGGCAGCAGTTGGCAGTTAAGCAGCAGCAGCAGCAGCGT
GCAGGTATGGCCCAGAATTCACCGTCGTCGGCGCCAGCACCGGCACCACC
AGCAGCAACACCGGCGGCGGCGGCGGCGGCGGCGGCTCCGGCAGCAGCCC
CTCCGTGTCGGTTTTACGCGAGAGGGCTCTGCGCCAAGGGTAAGGCGTGC
CCATTCTTCCACGCCCCTCACACCGCGCAAGCGCCGGCGACACCGACAGC
AGCGGTGGCGGCGGAGAACAGCGGCCGCACGAAGACGTACCCCGCCCCCA
ACACCCTTCGAGGC
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