mRNA_H-canaliculatus_F_contig14626.3558.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14626.3558.1
Unique NamemRNA_H-canaliculatus_F_contig14626.3558.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14626.3558.1 vs. uniprot
Match: A0A6H5L7P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P1_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 2.280e-41
Identity = 94/130 (72.31%), Postives = 101/130 (77.69%), Query Frame = 1 
Query:  274 QALKLCTTPAPSQTAATRSLAPLGIREVAPTLGGPVGSLGGLVSRRHLRVTRTPPQTPPMPPMDLRYNYAAGVFIVVLFTWAALTPEDDGFNTLLGXXXXXXXXXXXXXXXXV-RYDGTGYEGRDKALAG 660
            QAL+   TP+   +A T + A       A  + GPVGSLGGLVSRRHLRVT TPPQTPPMPPMDLRYNYAAGVFIVVLFTWAAL+PEDDGFNTLLG       XXXXXXXXX  RYDGTGYEGRDKAL+G
Sbjct:   18 QALRPTVTPSTKISALTPTAA-------ARPIVGPVGSLGGLVSRRHLRVTHTPPQTPPMPPMDLRYNYAAGVFIVVLFTWAALSPEDDGFNTLLGGSGMNKDXXXXXXXXXXERYDGTGYEGRDKALSG 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14626.3558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7P1_9PHAE2.280e-4172.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14626contigH-canaliculatus_F_contig14626:368..2349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size1324
Cds size663
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14626.3558.1prot_H-canaliculatus_F_contig14626.3558.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14626 945..2265 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929211.7250452-UTR-H-canaliculatus_F_contig14626:367..9441622929211.7250452-UTR-H-canaliculatus_F_contig14626:367..944Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14626 368..944 -
1696845719.6606498-UTR-H-canaliculatus_F_contig14626:367..9441696845719.6606498-UTR-H-canaliculatus_F_contig14626:367..944Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14626 368..944 -
1622929211.779943-UTR-H-canaliculatus_F_contig14626:2265..23491622929211.779943-UTR-H-canaliculatus_F_contig14626:2265..2349Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14626 2266..2349 -
1696845719.688638-UTR-H-canaliculatus_F_contig14626:2265..23491696845719.688638-UTR-H-canaliculatus_F_contig14626:2265..2349Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14626 2266..2349 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929211.744646-CDS-H-canaliculatus_F_contig14626:944..12211622929211.744646-CDS-H-canaliculatus_F_contig14626:944..1221Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14626 945..1221 -
1696845719.6695971-CDS-H-canaliculatus_F_contig14626:944..12211696845719.6695971-CDS-H-canaliculatus_F_contig14626:944..1221Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14626 945..1221 -
1622929211.763211-CDS-H-canaliculatus_F_contig14626:1879..22651622929211.763211-CDS-H-canaliculatus_F_contig14626:1879..2265Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14626 1880..2265 -
1696845719.6800284-CDS-H-canaliculatus_F_contig14626:1879..22651696845719.6800284-CDS-H-canaliculatus_F_contig14626:1879..2265Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14626 1880..2265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14626.3558.1

>prot_H-canaliculatus_F_contig14626.3558.1 ID=prot_H-canaliculatus_F_contig14626.3558.1|Name=mRNA_H-canaliculatus_F_contig14626.3558.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=221bp
MCRRWGVAFYRSDSITISLRFLEDGFADSQQHKHCRNDEWQISRKCAALN
PAFLLKSRPPHHMQALKLCTTPAPSQTAATRSLAPLGIREVAPTLGGPVG
SLGGLVSRRHLRVTRTPPQTPPMPPMDLRYNYAAGVFIVVLFTWAALTPE
DDGFNTLLGGGGMGDDDDDDDDDDDVRYDGTGYEGRDKALAGSSGGEGGR
SSSNSSSGIAASSNRAAERD*
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mRNA from alignment at H-canaliculatus_F_contig14626:368..2349-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14626.3558.1 ID=mRNA_H-canaliculatus_F_contig14626.3558.1|Name=mRNA_H-canaliculatus_F_contig14626.3558.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1982bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14626:368..2349- (Hapterophycus canaliculatus Oshoro5f female)
GTTGAAGGGAGTGACGGACGACGGTTTGCTGCCTATGTGCCTCACGCGCA
AGGGTTTCCTTCCCCCCTCGACAAGAGTGCAGTAATGTGTCGAAGGTGGG
GTGTTGCATTTTATCGCTCCGACTCCATCACCATTTCCCTCCGATTTTTG
GAGGATGGATTCGCTGATTCGCAACAACATAAGCACTGCCGAAATGACGA
ATGGCAAATATCAAGAAAGTGCGCAGCATTGAACCCCGCTTTCCTACTGA
AATCCCGCCCTCCGCACCACATGCAGGCCCTGAAACTATGCACAACACCA
GCGCCATCACAGACTGCCGCCACACGATCATTAGCGCCACTGGGGATTAG
GGAAGTAGCGCCTACGTTGGGCGGGCCGGTCGGAAGCTTGGGTGGTCTCG
TGAGCAGGCGTCACTTACGAGTGACACGCACGCCCCCTCAGACACCTCCA
ATGCCGCCTATGGACCTCAGGTACGCCCGACGAACGGACGCCAGTCCACT
CAGCCGTTCAGCTCGTCCGCTTGGAACAACTCCTTTCTTTGTGATGGCGT
AAAAGAGCACAACGCTTCAGCAGCCGGCGTTCGTAGGTTCGGGTCGCTTG
ACGCACCCAGGGATGATTTGATTTTCCGATCTTTCGCTGAACACCGCGGT
GGCCAACCCCCGCCATGTTTTTTTTCAAATGGAGGACGCCACACGGCGGT
GGCCAACCCCCGCTGTATTTTTTTCCAAAGGGAGGACGCAAAGAGGCACA
GGAAAGACACAACATACCCCCTAAAGAGGCGTGAATGCTGTGAGTGGGTC
CCGTACACCGCGCGCTGACAAAGTGTGAACGCGTGCCCGACGCTGCTGTA
TTCAGCAAGACGGGGTTGCTCCCCGTCTACTTTGCCGTCTGTGCTCTTGC
TCGCCACGCCGCTCAGAGGTTTCGATGTGTCCTACGCACGTCTTGCTGGA
TTCGGTTCGATCATTCATGGTACCTCGACGGCGCGAACTTTTTAGGCTTC
CCCTCGTCTCCATTCCCCTGAGTAGATAGGTCAGAAATATTCGCAAAATA
ACGATATTCTCGATGCCGCTCTTGTGGGAGTTCAAAGTCAGTAACGCCTC
AAGTTCCGGTCGACTCTCACGCCAACAGGTACAATTACGCCGCGGGAGTG
TTCATCGTAGTCCTCTTTACCTGGGCGGCGCTGACCCCCGAGGACGATGG
TTTCAACACCCTTCTAGGTGGGGGGGGGATGGGCGACGACGACGACGACG
ACGATGACGACGACGACGTCCGCTACGACGGTACCGGTTATGAGGGAAGG
GACAAGGCCTTGGCCGGTAGCAGCGGCGGAGAAGGAGGTCGTAGCAGTAG
CAACAGCAGCAGTGGTATTGCAGCAAGCAGCAATCGTGCTGCTGAGAGAG
ATTGACCGTGATACGTTGCTCTGGGTGATGGGTTTCATTCGCTCCTGTCT
TTTTTGGGGGATGTAGTTTTTCGCGACGGAGCATTTCTTTGGCGTTGCCT
GGCGGCCATGGAGAACGCATGTCAACATAGATAGTTTTTATCGAAGGGAT
GAAGCAGTGGCCGTGCACGATACTAGCCGCCTCGAACGCGGCAAGATGGG
TCCTGCATGCTTTCTTGAGCCGTTTTTTCGGGCTCATCATCAAAACGAAA
GGGGTGACCGGGAGTAGCGTGCAGTTGGCCTTGCGCTTGCGGAGTTTAAT
TTTGTGCTTGTATTCTCTTGCAGGTTTTGGCGCGAACATCGCCCCCGTGT
TCATGTCACGTCCCACGATGAAGAACACTGTAGTTTCATTTTTCACGAAC
CATCGCGGATAAGCGTCGGGTTGATTTGCATGCGCTGAAGCAGCAGCGAG
AGAAGCCATCATCTGTGGGTTTCAAGCTTCGTGTTGCTGCTCTCTCGTCC
CTCGCGCATGTAGAAACTGTTGGCTCGTTTCGAAGCTCGACGGTTCGAAC
GTCTTGATAACCCCCCCCGCATGGAGACAATG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14626:368..2349-

>mRNA_H-canaliculatus_F_contig14626.3558.1 ID=mRNA_H-canaliculatus_F_contig14626.3558.1|Name=mRNA_H-canaliculatus_F_contig14626.3558.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1326bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14626:368..2349- (Hapterophycus canaliculatus Oshoro5f female)
ATGTGTCGAAGGTGGGGTGTTGCATTTTATCGCTCCGACTCCATCACCAT
TTCCCTCCGATTTTTGGAGGATGGATTCGCTGATTCGCAACAACATAAGC
ACTGCCGAAATGACGAATGGCAAATATCAAGAAAGTGCGCAGCATTGAAC
CCCGCTTTCCTACTGAAATCCCGCCCTCCGCACCACATGCAGGCCCTGAA
ACTATGCACAACACCAGCGCCATCACAGACTGCCGCCACACGATCATTAG
CGCCACTGGGGATTAGGGAAGTAGCGCCTACGTTGGGCGGGCCGGTCGGA
AGCTTGGGTGGTCTCGTGAGCAGGCGTCACTTACGAGTGACACGCACGCC
CCCTCAGACACCTCCAATGCCGCCTATGGACCTCAGATGTGTCGAAGGTG
GGGTGTTGCATTTTATCGCTCCGACTCCATCACCATTTCCCTCCGATTTT
TGGAGGATGGATTCGCTGATTCGCAACAACATAAGCACTGCCGAAATGAC
GAATGGCAAATATCAAGAAAGTGCGCAGCATTGAACCCCGCTTTCCTACT
GAAATCCCGCCCTCCGCACCACATGCAGGCCCTGAAACTATGCACAACAC
CAGCGCCATCACAGACTGCCGCCACACGATCATTAGCGCCACTGGGGATT
AGGGAAGTAGCGCCTACGTTGGGCGGGCCGGTCGGAAGCTTGGGTGGTCT
CGTGAGCAGGCGTCACTTACGAGTGACACGCACGCCCCCTCAGACACCTC
CAATGCCGCCTATGGACCTCAGGTACAATTACGCCGCGGGAGTGTTCATC
GTAGTCCTCTTTACCTGGGCGGCGCTGACCCCCGAGGACGATGGTTTCAA
CACCCTTCTAGGTGGGGGGGGGATGGGCGACGACGACGACGACGACGATG
ACGACGACGACGTCCGCTACGACGGTACCGGTTATGAGGGAAGGGACAAG
GCCTTGGCCGGTAGCAGCGGCGGAGAAGGAGGTCGTAGCAGTAGCAACAG
CAGCAGTGGTATTGCAGCAAGCAGCAATCGTGCTGCTGAGAGAGATTGAG
TACAATTACGCCGCGGGAGTGTTCATCGTAGTCCTCTTTACCTGGGCGGC
GCTGACCCCCGAGGACGATGGTTTCAACACCCTTCTAGGTGGGGGGGGGA
TGGGCGACGACGACGACGACGACGATGACGACGACGACGTCCGCTACGAC
GGTACCGGTTATGAGGGAAGGGACAAGGCCTTGGCCGGTAGCAGCGGCGG
AGAAGGAGGTCGTAGCAGTAGCAACAGCAGCAGTGGTATTGCAGCAAGCA
GCAATCGTGCTGCTGAGAGAGATTGA
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