mRNA_H-canaliculatus_F_contig14615.3554.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14615.3554.1
Unique NamemRNA_H-canaliculatus_F_contig14615.3554.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14615.3554.1 vs. uniprot
Match: A0A6H5L351_9PHAE (DNMT1-RFD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L351_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.560e-37
Identity = 81/101 (80.20%), Postives = 84/101 (83.17%), Query Frame = 1 
Query:  139 LAKLEQKRLEKEAKXXXXAEQHAREQARRGIERERARLAKRYPLPDEELWEEQLQMGKQPAPWPESGELPCPPGFPPSAFGDVVSAWACLQLFGTLMHLKR 441
            LAKLEQKRLEK   XXXX          RGIE+ERARLAKRYPLPDEEL +EQL MGKQPAPWPE G+LPCP GFPPSAFGDVVSAWACLQLFGTLMHLKR
Sbjct:  921 LAKLEQKRLEKXXXXXXXXXXXXXXXXXRGIEKERARLAKRYPLPDEELRQEQLLMGKQPAPWPEPGKLPCPRGFPPSAFGDVVSAWACLQLFGTLMHLKR 1021
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BLAST of mRNA_H-canaliculatus_F_contig14615.3554.1 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 3.990e-37
Identity = 80/100 (80.00%), Postives = 83/100 (83.00%), Query Frame = 1 
Query:  142 AKLEQKRLEKEAKXXXXAEQHAREQARRGIERERARLAKRYPLPDEELWEEQLQMGKQPAPWPESGELPCPPGFPPSAFGDVVSAWACLQLFGTLMHLKR 441
            AKLEQKRLEK   XXXX          RGIE+ERARLAKRYPLPDEEL +EQL MGKQPAPWPE G+LPCP GFPPSAFGDVVSAWACLQLFGTLMHLKR
Sbjct:  610 AKLEQKRLEKXXXXXXXXXXXXXXXXXRGIEKERARLAKRYPLPDEELRQEQLLMGKQPAPWPEPGQLPCPRGFPPSAFGDVVSAWACLQLFGTLMHLKR 709
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BLAST of mRNA_H-canaliculatus_F_contig14615.3554.1 vs. uniprot
Match: A0A835ZDW7_9STRA (Bromo domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDW7_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.100e-9
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:  229 IERERARLAKRYPLPDEELWEEQLQMGKQPAPWPESGELPCPPGFPPSAFGDVVSAWACLQLFGTLMHLKR 441
            +E++R    KRYP+PDEELWEE L+  +Q  PWP   E P PP     AFG+++S WA +QLFG L+   +
Sbjct:  765 LEKKRMAALKRYPIPDEELWEE-LKDHEQ-DPWPMPPERPHPPSLSGEAFGELLSTWAFMQLFGELVRAPK 833
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14615.3554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L351_9PHAE1.560e-3780.20DNMT1-RFD domain-containing protein n=1 Tax=Ectoca... [more]
D7G6R7_ECTSI3.990e-3780.00Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835ZDW7_9STRA1.100e-947.89Bromo domain-containing protein n=1 Tax=Tribonema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14615contigH-canaliculatus_F_contig14615:234..2248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.6
Seed ortholog evalue1.7e-32
Seed eggNOG ortholog2880.D7G6R7
KEGG koko:K03125
KEGG Pathwayko03022,map03022
EggNOG free text desc.negative regulation of protein autoubiquitination
EggNOG OGsCOG5179@1,KOG0008@2759
Ec32 ortholog descriptionBromodomain WHIM and ARF domain protein
Ec32 orthologEc-26_000390.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size442
Cds size417
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14615.3554.1prot_H-canaliculatus_F_contig14615.3554.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14615 234..2224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929211.0800254-CDS-H-canaliculatus_F_contig14615:233..3951622929211.0800254-CDS-H-canaliculatus_F_contig14615:233..395Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14615 234..395 -
1696845719.412092-CDS-H-canaliculatus_F_contig14615:233..3951696845719.412092-CDS-H-canaliculatus_F_contig14615:233..395Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14615 234..395 -
1622929211.0919201-CDS-H-canaliculatus_F_contig14615:793..9881622929211.0919201-CDS-H-canaliculatus_F_contig14615:793..988Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14615 794..988 -
1696845719.4273813-CDS-H-canaliculatus_F_contig14615:793..9881696845719.4273813-CDS-H-canaliculatus_F_contig14615:793..988Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14615 794..988 -
1622929211.2551875-CDS-H-canaliculatus_F_contig14615:2164..22241622929211.2551875-CDS-H-canaliculatus_F_contig14615:2164..2224Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14615 2165..2224 -
1696845719.438212-CDS-H-canaliculatus_F_contig14615:2164..22241696845719.438212-CDS-H-canaliculatus_F_contig14615:2164..2224Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14615 2165..2224 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929211.2699037-UTR-H-canaliculatus_F_contig14615:2224..22481622929211.2699037-UTR-H-canaliculatus_F_contig14615:2224..2248Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14615 2225..2248 -
1696845719.4473326-UTR-H-canaliculatus_F_contig14615:2224..22481696845719.4473326-UTR-H-canaliculatus_F_contig14615:2224..2248Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14615 2225..2248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14615.3554.1

>prot_H-canaliculatus_F_contig14615.3554.1 ID=prot_H-canaliculatus_F_contig14615.3554.1|Name=mRNA_H-canaliculatus_F_contig14615.3554.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=139bp
MLLERQAERQAAQEKKLEKQREMAEEKERVRRAKEMERLAKLEQKRLEKE
AKDRERAEQHAREQARRGIERERARLAKRYPLPDEELWEEQLQMGKQPAP
WPESGELPCPPGFPPSAFGDVVSAWACLQLFGTLMHLKR
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mRNA from alignment at H-canaliculatus_F_contig14615:234..2248-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14615.3554.1 ID=mRNA_H-canaliculatus_F_contig14615.3554.1|Name=mRNA_H-canaliculatus_F_contig14615.3554.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2015bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14615:234..2248- (Hapterophycus canaliculatus Oshoro5f female)
CGCCAGGCCGAGGAGAAAGCGAGGATGCTGCTGGAGAGGCAGGCGGAGCG
CCAGGCTGCCCAAGAGAAGAAGCTCGAGAAGCAGGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTCGCTCTTGATTTTGCTTTTGCTTGTGCGTCTT
GTGTCATCTCGACCAGCGCGCAGGCTCGCGTGGGTGCATGAGTGTGTGTG
TGCGTTGCGTTGCTGTCGGCCGAGAAAGCCTGTCGAGGTCGAGGTCGAGG
TTAATGTCAAGGCCACGTTTAAGGTCGAGCAGTGAGTAGACGACGGGTTC
TTCGAACGGGCTGGTGTTGGTATGCTGCAAGCCTCGGGCAGCAGGTAAGA
GCGGTTGGCGATTGGGCGAATGGAATACCCGGGGTCGTTTCTTGTTTCAT
ACTTGGAAGTACATGGTAAGTGTGGCCGACTGCTCTTTTTTCTGCGTGTG
GCGGGAACTTTTTGTATTTTCAGGTCACACTGCGGTTTAGCTTGTTTTAT
TCCTTATCCATTGAGGGGTCGACGGCCGAGTGAGTGCGGCCCAGCTTCGG
AGCGAACCGAAGCATGCTTATACTCGTGATCCCGTAGATTTCGTAGAGGT
GCTTGTATTTGTAGACGTGGCGTTTTAGCCGTGGTTGTGCGTAGCTATCC
ATTCACTCGTTCAGCATTCATTCGTTCATAGCTTGCGCATGTTGCCGTGA
TATCGTGATATTGTGATATTGTGATATCGATGGTTTTTTTTTCGCAGGGT
GAAATGGGATGCTGTGCTGTGCTGTGCTGTGCTGATACTGTCCTGTGCTT
TTGACGGCTGTAAGTGTCGTGATTTTTTCAGCTTGGAATTTGAGGCTTGA
AGCACAACTACACACGAGAGCCTGTGACGTAGTAGTAGTTGGGGGCGGTG
TGTGGAGCGCACTGTACTTCCGGGCGTGGGTAGAGCGAACAAAAAGTGAA
AAAAAGAGTGAACACAAAAAAAAAGAATGAAAAAGGCTGGTCTTGAAGGG
TGTCCATTCTGCGTTGCCACATATCATGTCATAGCTGTACAAGTACGACA
TGCTCGAACACGTAAAGTGACGCGTGACTCAGCATCTCAAGATTTGTTGT
ACACGTGTTCCCTGTATCGGCGATCCACACAAACTTTTCCGGATACAAAG
GAATGCAGTAACCCCCAACCCCCGAACACCTCCCAAGACAACGTCGCCGA
CACAACGAATGAACAATCGATCCGAATGAACATCCCAAATGGGCCGCGCG
GGACGGACAGCGCGAGATGGCGGAGGAGAAGGAGCGCGTTCGCAGAGCTA
AGGAGATGGAGCGCTTGGCCAAGCTGGAGCAAAAGAGGCTCGAGAAGGAG
GCTAAGGACAGGGAGAGGGCGGAGCAGCATGCCCGAGAGCAGGCGCGGCG
GGGCATCGAGAGAGAGAGGGCCAGGTTGGCCAAGCGCTACCCGCTTCCCG
ACGAGGTACGGCTCGCCCGCGTGCTTCCCCTCGGGCGTGTGTGTATGTGT
ACCGGCATCCGTGCATCCGCGCCTGTGTTTGGTTTCCGAGCGTCGACAGC
GGTGACCCGCCCCCGACTGAAAAGTAGATAGACGGCGCTACAAGCTGGCA
AAGGCTTTTGACCCAAAAATCTTCATCAGTGACTGCCATGCCCAAAACCA
TCAAAGCAGGTATCGTGGTGACCGCCATGGACAACTGGACAGGGTGACAT
GGCCGGGTTTGTTTTTAAGACGTGCGTTAGTCGCGCGTAGTGCGAGGCCT
GTCTGACAGAGCGCGACGCGTAGCGATAGGAGACGATTATATTCCACTGC
TGCCCCACCTCACAAGCTGCGCGTTGATGGTGATCTCGCCGCTCAAAACG
CAGGAGCTGTGGGAGGAGCAGCTCCAGATGGGCAAGCAGCCCGCGCCGTG
GCCGGAGTCTGGAGAGCTGCCCTGCCCTCCGGGCTTCCCGCCAAGCGCAT
TCGGTGATGTCGTCAGTGCATGGGCCTGCCTCCAGCTCTTCGGCACCCTG
ATGCACTTGAAGAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14615:234..2248-

>mRNA_H-canaliculatus_F_contig14615.3554.1 ID=mRNA_H-canaliculatus_F_contig14615.3554.1|Name=mRNA_H-canaliculatus_F_contig14615.3554.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=834bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14615:234..2248- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGCTGGAGAGGCAGGCGGAGCGCCAGGCTGCCCAAGAGAAGAAGCT
CGAGAAGCAGATGCTGCTGGAGAGGCAGGCGGAGCGCCAGGCTGCCCAAG
AGAAGAAGCTCGAGAAGCAGCGCGAGATGGCGGAGGAGAAGGAGCGCGTT
CGCAGAGCTAAGGAGATGGAGCGCTTGGCCAAGCTGGAGCAAAAGAGGCT
CGAGAAGGAGGCTAAGGACAGGGAGAGGGCGGAGCAGCATGCCCGAGAGC
AGGCGCGGCGGGGCATCGAGAGAGAGAGGGCCAGGTTGGCCAAGCGCTAC
CCGCTTCCCGACGAGCGCGAGATGGCGGAGGAGAAGGAGCGCGTTCGCAG
AGCTAAGGAGATGGAGCGCTTGGCCAAGCTGGAGCAAAAGAGGCTCGAGA
AGGAGGCTAAGGACAGGGAGAGGGCGGAGCAGCATGCCCGAGAGCAGGCG
CGGCGGGGCATCGAGAGAGAGAGGGCCAGGTTGGCCAAGCGCTACCCGCT
TCCCGACGAGGAGCTGTGGGAGGAGCAGCTCCAGATGGGCAAGCAGCCCG
CGCCGTGGCCGGAGTCTGGAGAGCTGCCCTGCCCTCCGGGCTTCCCGCCA
AGCGCATTCGGTGATGTCGTCAGTGCATGGGCCTGCCTCCAGCTCTTCGG
CACCCTGATGCACTTGAAGAGGGAGCTGTGGGAGGAGCAGCTCCAGATGG
GCAAGCAGCCCGCGCCGTGGCCGGAGTCTGGAGAGCTGCCCTGCCCTCCG
GGCTTCCCGCCAAGCGCATTCGGTGATGTCGTCAGTGCATGGGCCTGCCT
CCAGCTCTTCGGCACCCTGATGCACTTGAAGAGG
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