mRNA_H-canaliculatus_F_contig14610.3553.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14610.3553.1
Unique NamemRNA_H-canaliculatus_F_contig14610.3553.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14610.3553.1 vs. uniprot
Match: D8LHR0_ECTSI (C-type lectin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHR0_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 8.940e-66
Identity = 105/134 (78.36%), Postives = 116/134 (86.57%), Query Frame = 1 
Query:    1 GIIQVTAASLTSSGCPEGWLYSEDTDNCYLKSPNTAKAENQAHASTICEAEGAWLIAINSEAENDFLLHNLLFPGFFGETYTGMTKESPAAEWVWPAESSTTAYDCLGDYSDWLEGAAIGCDSDFGDGADGSCM 402
            G+  VTAASL+S+GCPEGWLY EDT NCY KSPNTAKAENQA A +ICE EGAW+IAI+SEAENDFLLHN+LF GFFGETYTGMTKESP+ EW WPAESS TAY+C+GDYSDWLEGA IGC + F  G DGSCM
Sbjct:   86 GLSLVTAASLSSTGCPEGWLYFEDTGNCYFKSPNTAKAENQADAVSICEEEGAWVIAIDSEAENDFLLHNMLFTGFFGETYTGMTKESPSDEWEWPAESSDTAYNCVGDYSDWLEGAEIGCAAVFDGGEDGSCM 219
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BLAST of mRNA_H-canaliculatus_F_contig14610.3553.1 vs. uniprot
Match: D8LQ88_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ88_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.730e-8
Identity = 32/65 (49.23%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:   55 WLYSEDTDNCYLKSPNTAKAENQAHASTICEAEGAWLIAINSEAENDFLLHNLLFPGFFGETYTG 249
            WL  E++  CY KS     A N   A   C   GA L+++ SEAENDF+ HNLL+ GF GE YTG
Sbjct:  101 WLAFENS--CYSKSSYLDAAVNWEDADARCGEVGARLVSLESEAENDFVTHNLLWIGFLGEAYTG 163
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BLAST of mRNA_H-canaliculatus_F_contig14610.3553.1 vs. uniprot
Match: UPI0009E6222F (low affinity immunoglobulin epsilon Fc receptor-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E6222F)

HSP 1 Score: 53.5 bits (127), Expect = 3.390e-6
Identity = 39/115 (33.91%), Postives = 58/115 (50.43%), Query Frame = 1 
Query:    4 IIQVTAASLTSSGCPEGWLYSEDTDNCYLKSPNTAKAENQAHASTICEAEGAWLIAINSEAENDFLLHNLL---FPGFFGETYTGMTKESPAAEWVWPAESSTTAYDCLGDYSDW 339
            II V   +L ++GC +GW      DN  LK  N +K+ ++A  S  CE  GA L+ + SE ENDFLLH  +         E + G++ +    E++W   +ST        YS+W
Sbjct:    7 IITVLLVNL-AAGCEKGW---RKFDNKCLKLFNESKSWHEAEKS--CERAGAHLVKVESEKENDFLLHTFMQIPIGKLNREAWIGLSDKEKEGEFMWTDGTSTK-------YSNW 108
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BLAST of mRNA_H-canaliculatus_F_contig14610.3553.1 vs. uniprot
Match: A0A182EFP9_ONCOC (Uncharacterized protein n=1 Tax=Onchocerca ochengi TaxID=42157 RepID=A0A182EFP9_ONCOC)

HSP 1 Score: 52.8 bits (125), Expect = 2.350e-5
Identity = 36/124 (29.03%), Postives = 59/124 (47.58%), Query Frame = 1 
Query:   31 TSSGCPEGWLYSEDTDNCYLKSPNTAKAENQAHASTICEAEGAWLIAINSEAENDFLLHNLLFPGFFGETYTGMTKESPAAEWVWPAESSTTAYDCLGDYSDWLEGAAIGCDSDFGDGADGSCM 402
            +SS CP+G+ Y E+++ C++    T +A +Q +A   C  + A+L +I S+ ENDF+  NLL        Y G+          +  + +T       DY+ W+ G       D GD  D  C+
Sbjct:   23 SSSSCPDGFSYHENSEKCFMVEKWTDEAISQMNARLTCAKKNAFLASIESDDENDFI-RNLLMEKDAMIAYIGLQSVPYDVSQRYWCDGNTL------DYTQWMSGKP-----DNGDFEDDGCV 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14610.3553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LHR0_ECTSI8.940e-6678.36C-type lectin domain-containing protein n=1 Tax=Ec... [more]
D8LQ88_ECTSI1.730e-849.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI0009E6222F3.390e-633.91low affinity immunoglobulin epsilon Fc receptor-li... [more]
A0A182EFP9_ONCOC2.350e-529.03Uncharacterized protein n=1 Tax=Onchocerca ochengi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14610contigH-canaliculatus_F_contig14610:438..2020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size403
Cds size402
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14610.3553.1prot_H-canaliculatus_F_contig14610.3553.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14610 438..2019 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929211.0029676-CDS-H-canaliculatus_F_contig14610:437..6201622929211.0029676-CDS-H-canaliculatus_F_contig14610:437..620Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14610 438..620 +
1696845719.372024-CDS-H-canaliculatus_F_contig14610:437..6201696845719.372024-CDS-H-canaliculatus_F_contig14610:437..620Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14610 438..620 +
1622929211.0174515-CDS-H-canaliculatus_F_contig14610:1411..15251622929211.0174515-CDS-H-canaliculatus_F_contig14610:1411..1525Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14610 1412..1525 +
1696845719.3841085-CDS-H-canaliculatus_F_contig14610:1411..15251696845719.3841085-CDS-H-canaliculatus_F_contig14610:1411..1525Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14610 1412..1525 +
1622929211.0333683-CDS-H-canaliculatus_F_contig14610:1914..20191622929211.0333683-CDS-H-canaliculatus_F_contig14610:1914..2019Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14610 1915..2019 +
1696845719.3976853-CDS-H-canaliculatus_F_contig14610:1914..20191696845719.3976853-CDS-H-canaliculatus_F_contig14610:1914..2019Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14610 1915..2019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14610.3553.1

>prot_H-canaliculatus_F_contig14610.3553.1 ID=prot_H-canaliculatus_F_contig14610.3553.1|Name=mRNA_H-canaliculatus_F_contig14610.3553.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=134bp
GIIQVTAASLTSSGCPEGWLYSEDTDNCYLKSPNTAKAENQAHASTICEA
EGAWLIAINSEAENDFLLHNLLFPGFFGETYTGMTKESPAAEWVWPAESS
TTAYDCLGDYSDWLEGAAIGCDSDFGDGADGSCM
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mRNA from alignment at H-canaliculatus_F_contig14610:438..2020+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14610.3553.1 ID=mRNA_H-canaliculatus_F_contig14610.3553.1|Name=mRNA_H-canaliculatus_F_contig14610.3553.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1583bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14610:438..2020+ (Hapterophycus canaliculatus Oshoro5f female)
GGGATCATTCAGGTGACAGCAGCATCGCTGACCTCGAGCGGTTGCCCGGA
AGGGTGGCTGTACTCGGAGGACACAGACAACTGTTACCTCAAGAGTCCCA
ACACGGCCAAGGCGGAGAACCAGGCGCACGCATCGACGATTTGCGAAGCC
GAGGGTGCCTGGCTCATCGCCATCAACTCCGAGGTATTCGATTTGTCCGC
TCCACGAGAATTTATTCTTTCTCTCCTTTTTGTGTTTTCTACCGCCGACG
CGCGTGCCCTCTCTTGACATATGCCTTGCAGAGATGGTCCATGTATCCCT
CCTGCGTCCCGCGCTTGGAAGGCCTTTTTTCCCCGCTACATCCCTCTGCC
GGTACCAAGCGGGGTAGGCCGAGGTGCTTCGTCCCAGGCGCTCTCACCCG
CGATCCTTGTCAACAAAGGGCATCGTGAGGAATTATGGGGAGCAACCTAT
TATCATGCGCATAATCCACCAATTGACACTCCGCACACACCTCTCCACCG
CACACACACACTGCGCGGGGTTTCACAACTTGTTTCTGTTCTTTTTTTTT
GTCCCTACCCACACACAATGGACCCTCATTGTTGGGAACGCTACCGATAC
TTCGATGTGCGTCTCGCACGGCATACCTCAGGAGGTGTTCCAGCCGGTTT
GTCATGTCTGTCTTCGAAAGGTATCGGCGAAAGGCCTAAAACCTCGGTCG
AATGTCTTCGCGATACGCCCGGCAACCAGAGAACGCCACCGATGTTGCTG
CGCACCACGCGTTACAGTAGACGTCTGGCCGCTCGCTCCGCCTCCGGAAC
GCTTGTGATGGGAGTGGAGTAGCGGCTTTGTGGAAGGAACGGCACGGCTC
GTCCTTTTGCACGCCCCGCGGTCAACCCAAGCGAGCACCCCACCCCCTGT
CTTCCGCCGTTGCGCCGGCCATCCACCCCGTCCACAACTTTTCTGTGCTT
GCTTTTGTGTCGTGTCCTGTGCAGGCGGAGAACGATTTCTTGTTGCACAA
TCTGCTGTTCCCCGGCTTCTTCGGAGAGACGTACACGGGCATGACCAAGG
AAAGCCCGGCAGCGGAATGGGTGTGGCCCGCCGAATCGGTGAGACTAAAG
CGCAGGCGCTAGCAGCAGCAGCAGCAGCAGCAACACCGTCTCTTCATCAC
GTGGGATGCGGGACGTCGTCTTCGTGTGTAGTCTACGAATGATCGTGGCA
GATGCACATCGGCGTCCTCCCGCACGAAGCCAAGAACTCCAAAAAAAGGC
GAACAAATTCTTCCGCCGACCGCCGCCGGCCATCTCGTGGTAGATAAAGG
ACGCGACGATGGACGTCGTCTCCTGCCGCGGCCAAGACCTCCTTTCCTAC
TCGCGCGCCGTCCTCCGGAGTGCCTGCTTACTTTTGCGCTCACCTTGTTA
TCTCCACTCTTTGTCTTGTGTGCCTTCGGGGGGGGGGGGGTTGGGCGCGC
GCGCGTGTCTCTCCACGACGATGGCAGTCGACGACGGCCTACGACTGCCT
CGGAGACTACTCCGACTGGCTGGAAGGAGCCGCCATCGGGTGCGACTCGG
ACTTCGGCGACGGAGCAGACGGGTCGTGCATGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14610:438..2020+

>mRNA_H-canaliculatus_F_contig14610.3553.1 ID=mRNA_H-canaliculatus_F_contig14610.3553.1|Name=mRNA_H-canaliculatus_F_contig14610.3553.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=804bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14610:438..2020+ (Hapterophycus canaliculatus Oshoro5f female)
GGGATCATTCAGGTGACAGCAGCATCGCTGACCTCGAGCGGTTGCCCGGA
AGGGTGGCTGTACTCGGAGGACACAGACAACTGTTACCTCAAGAGTCCCA
ACACGGCCAAGGCGGAGAACCAGGCGCACGCATCGACGATTTGCGAAGCC
GAGGGTGCCTGGCTCATCGCCATCAACTCCGAGGGGATCATTCAGGTGAC
AGCAGCATCGCTGACCTCGAGCGGTTGCCCGGAAGGGTGGCTGTACTCGG
AGGACACAGACAACTGTTACCTCAAGAGTCCCAACACGGCCAAGGCGGAG
AACCAGGCGCACGCATCGACGATTTGCGAAGCCGAGGGTGCCTGGCTCAT
CGCCATCAACTCCGAGGCGGAGAACGATTTCTTGTTGCACAATCTGCTGT
TCCCCGGCTTCTTCGGAGAGACGTACACGGGCATGACCAAGGAAAGCCCG
GCAGCGGAATGGGTGTGGCCCGCCGAATCGGCGGAGAACGATTTCTTGTT
GCACAATCTGCTGTTCCCCGGCTTCTTCGGAGAGACGTACACGGGCATGA
CCAAGGAAAGCCCGGCAGCGGAATGGGTGTGGCCCGCCGAATCGTCGACG
ACGGCCTACGACTGCCTCGGAGACTACTCCGACTGGCTGGAAGGAGCCGC
CATCGGGTGCGACTCGGACTTCGGCGACGGAGCAGACGGGTCGTGCATGT
CGACGACGGCCTACGACTGCCTCGGAGACTACTCCGACTGGCTGGAAGGA
GCCGCCATCGGGTGCGACTCGGACTTCGGCGACGGAGCAGACGGGTCGTG
CATG
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