mRNA_H-canaliculatus_F_contig1461.3551.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1461.3551.1
Unique NamemRNA_H-canaliculatus_F_contig1461.3551.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1461.3551.1 vs. uniprot
Match: D7FWG1_ECTSI (Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWG1_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.080e-20
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = -1
Query:  206 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL 331
            GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL
Sbjct:   32 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL 73          
BLAST of mRNA_H-canaliculatus_F_contig1461.3551.1 vs. uniprot
Match: A0A7I8LGH6_SPIIN (Sm protein F n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LGH6_SPIIN)

HSP 1 Score: 78.2 bits (191), Expect = 9.370e-17
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = -1
Query:  206 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL 331
            GFLVSVD+YMNL L +TEEYVDGEF GNLG++LIRCNNVLYL
Sbjct:   34 GFLVSVDSYMNLQLANTEEYVDGEFTGNLGEILIRCNNVLYL 75          
BLAST of mRNA_H-canaliculatus_F_contig1461.3551.1 vs. uniprot
Match: C1EHA5_MICCC (Sm protein F n=2 Tax=Micromonas TaxID=38832 RepID=C1EHA5_MICCC)

HSP 1 Score: 77.8 bits (190), Expect = 1.260e-16
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = -1
Query:  206 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL 331
            GFLVS D YMNL L STEEYVDG+FAGNLG+VLIRCNNVLYL
Sbjct:   33 GFLVSTDAYMNLQLASTEEYVDGKFAGNLGEVLIRCNNVLYL 74          
BLAST of mRNA_H-canaliculatus_F_contig1461.3551.1 vs. uniprot
Match: A0A176VZF1_MARPO (Sm protein F n=3 Tax=Viridiplantae TaxID=33090 RepID=A0A176VZF1_MARPO)

HSP 1 Score: 77.0 bits (188), Expect = 2.600e-16
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = -1
Query:  206 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL 331
            G+LVSVD+YMNL L STEEY+DG+F GNLG+VLIRCNNVLYL
Sbjct:   32 GYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRCNNVLYL 73          
BLAST of mRNA_H-canaliculatus_F_contig1461.3551.1 vs. uniprot
Match: A0A803QDU2_CANSA (Sm protein F n=5 Tax=Mesangiospermae TaxID=1437183 RepID=A0A803QDU2_CANSA)

HSP 1 Score: 76.6 bits (187), Expect = 3.780e-16
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = -1
Query:  206 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL 331
            GFLVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYL
Sbjct:   32 GFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYL 73          
BLAST of mRNA_H-canaliculatus_F_contig1461.3551.1 vs. uniprot
Match: M5XGF4_PRUPE (Sm protein F n=4 Tax=Prunus TaxID=3754 RepID=M5XGF4_PRUPE)

HSP 1 Score: 76.6 bits (187), Expect = 4.090e-16
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = -1
Query:  206 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL 331
            GFLVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYL
Sbjct:   32 GFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYL 73          
BLAST of mRNA_H-canaliculatus_F_contig1461.3551.1 vs. uniprot
Match: A0A7J6WA49_THATH (Sm protein F n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WA49_THATH)

HSP 1 Score: 76.6 bits (187), Expect = 4.550e-16
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = -1
Query:  206 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL 331
            GFLVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYL
Sbjct:   39 GFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYL 80          
BLAST of mRNA_H-canaliculatus_F_contig1461.3551.1 vs. uniprot
Match: I0YVI3_COCSC (Sm protein F n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YVI3_COCSC)

HSP 1 Score: 76.3 bits (186), Expect = 4.950e-16
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = -1
Query:  206 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL 331
            G+LVSVD+YMNL L STEEY+DG+F GNLG+VLIRCNNVLY+
Sbjct:   33 GYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRCNNVLYM 74          
BLAST of mRNA_H-canaliculatus_F_contig1461.3551.1 vs. uniprot
Match: A0A7S0SJP6_9CHLO (Sm protein F n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SJP6_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 5.050e-16
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = -1
Query:  206 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL 331
            G+LVS D YMNL L STEEY+DG+FAGNLG+VLIRCNNVLYL
Sbjct:   33 GYLVSTDAYMNLQLASTEEYIDGQFAGNLGEVLIRCNNVLYL 74          
BLAST of mRNA_H-canaliculatus_F_contig1461.3551.1 vs. uniprot
Match: D8RPX7_SELML (Sm protein F n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RPX7_SELML)

HSP 1 Score: 75.9 bits (185), Expect = 6.830e-16
Identity = 33/42 (78.57%), Postives = 40/42 (95.24%), Query Frame = -1
Query:  206 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL 331
            GFL+SVD+YMNL L +TEE++DG+FAGNLG+VLIRCNNVLYL
Sbjct:   32 GFLISVDSYMNLQLGNTEEFIDGQFAGNLGEVLIRCNNVLYL 73          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1461.3551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWG1_ECTSI1.080e-20100.00Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A7I8LGH6_SPIIN9.370e-1783.33Sm protein F n=1 Tax=Spirodela intermedia TaxID=51... [more]
C1EHA5_MICCC1.260e-1685.71Sm protein F n=2 Tax=Micromonas TaxID=38832 RepID=... [more]
A0A176VZF1_MARPO2.600e-1680.95Sm protein F n=3 Tax=Viridiplantae TaxID=33090 Rep... [more]
A0A803QDU2_CANSA3.780e-1678.57Sm protein F n=5 Tax=Mesangiospermae TaxID=1437183... [more]
M5XGF4_PRUPE4.090e-1678.57Sm protein F n=4 Tax=Prunus TaxID=3754 RepID=M5XGF... [more]
A0A7J6WA49_THATH4.550e-1678.57Sm protein F n=1 Tax=Thalictrum thalictroides TaxI... [more]
I0YVI3_COCSC4.950e-1678.57Sm protein F n=2 Tax=Coccomyxa TaxID=41891 RepID=I... [more]
A0A7S0SJP6_9CHLO5.050e-1680.95Sm protein F n=1 Tax=Mantoniella antarctica TaxID=... [more]
D8RPX7_SELML6.830e-1678.57Sm protein F n=1 Tax=Selaginella moellendorffii Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1461contigH-canaliculatus_F_contig1461:172..4495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size331
Cds size204
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1461.3551.1prot_H-canaliculatus_F_contig1461.3551.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1461 172..4368 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929210.6312077-CDS-H-canaliculatus_F_contig1461:171..2941622929210.6312077-CDS-H-canaliculatus_F_contig1461:171..294Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1461 172..294 -
1696845719.1484535-CDS-H-canaliculatus_F_contig1461:171..2941696845719.1484535-CDS-H-canaliculatus_F_contig1461:171..294Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1461 172..294 -
1622929210.6598983-CDS-H-canaliculatus_F_contig1461:4287..43681622929210.6598983-CDS-H-canaliculatus_F_contig1461:4287..4368Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1461 4288..4368 -
1696845719.1966195-CDS-H-canaliculatus_F_contig1461:4287..43681696845719.1966195-CDS-H-canaliculatus_F_contig1461:4287..4368Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1461 4288..4368 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929210.6812227-UTR-H-canaliculatus_F_contig1461:4368..44951622929210.6812227-UTR-H-canaliculatus_F_contig1461:4368..4495Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1461 4369..4495 -
1696845719.212377-UTR-H-canaliculatus_F_contig1461:4368..44951696845719.212377-UTR-H-canaliculatus_F_contig1461:4368..4495Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1461 4369..4495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1461.3551.1

>prot_H-canaliculatus_F_contig1461.3551.1 ID=prot_H-canaliculatus_F_contig1461.3551.1|Name=mRNA_H-canaliculatus_F_contig1461.3551.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=68bp
MICPVGWARKVTAGDTPAINLEQMGSQVQHVVTANQNVSQVPRELAVHVL
LCRREEEVHVSIHRHQES
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mRNA from alignment at H-canaliculatus_F_contig1461:172..4495-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1461.3551.1 ID=mRNA_H-canaliculatus_F_contig1461.3551.1|Name=mRNA_H-canaliculatus_F_contig1461.3551.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4324bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1461:172..4495- (Hapterophycus canaliculatus Oshoro5f female)
GTTGTGAGGTGCTTGGCCGAGGAAGTGAGGGGGGTGGGCCAGGGGTCAGA ACCGTGTGTTTCCTGTCTGGTACCGGTGGAGGCGGGCGAACACAGGCAGG CCACCGAGGGGCAACAAACAGCTTCATATGATATGTCCTGTCGGTTGGGC ACGCAAGGTGACAGCGGGTGACACACCAGCAATCAACCTCGAACAAATGG GATCCCAGGTGATCAACAAACGCTCGAGTTCACTGGAAATGCGGGGATCG CCGACGACACGACTTATAGAATATATTCGCACCTCTCTCCTGATATCGTA GATGCACCAATTTTATCTTCGGATCAAATTGAGTACACTACCGTATTATC ACACATGACATCAAATAATACGAACCGCGTTTCGCCGGCGGAGACATGTG GGCCGCATATGATGTCTAGGTGTCTGTAGGTCGAACTAACCGCTTGGAGG AAACTTCGACAAGATCAGACGTCCTCTACAACTGTGCAGAGGGACTGCGA CAGATACATACCAGCCGCTCTTCAGTCAGGAGGGACTTCTCTTCTTCCCA GCACCACAAATACGAATACCTGAAGGAGGCAAAGCAACCCGCCGACACAC CGACAACTGACGCGACAACGAAAGATGGACGCAAATGTGCACCGACGCGC CGACGCGCCGAAGCTCGGCGGAACTTGCAGTTCAGGGGTCATCGGTTCAT CGATTCTTGGACCCTCTTGCCGCAGCCACGGAAACGCGTAGACCGCTGAA ACATTATTTGTTTCCAGGGTAAAAAAGAGAGGACTCTCCACGCCGTCCAT GTGCTGCACGGCTGTCGCAACCACCCTCTCTGTCCTCCTACTTTTACATA TTGCTCTGGTATGTTGTTCCGATGTACGTACTCGTGTTGACAGAATACGC ACAGGGCGTGTCTAGGCACGGACTACGCCGACAGGCGGGACGAGATTGAA CTTTTCGATACACACACCCCACCTCTCAATCCCTGTGTGAAAAGGCGACA ACCACCCACAGGGCTTCGGACTGCTTCTTGAATCGCGGAGCTCCAAAAAT TGCCCGACACATGTACTTGTAGAACACGTCTGGTGCTTCACGACGCCAAC TGCTGAAAAAGTTCTTTGATCCAGCCATCTCTACCAACTTGCTCTCCTGT TGTTGATTCATGCGTAGTATTCTAACAGGCTGCCAACTACAAGCACCCTA CTGGCTGTACAGGCAAATGAGGCCCAACCAAGCTTTTTCTTATCCACTGG TGTCGCAAACAAACACACAGAACGACACCAGTCGCTAAACGAACGGTCCG CACAAAAACCCGTCTGGTGAACGGTGAAGGGGGCAGGGACGGCCCACAGA CATGGCGTTGACGTCGAAAGTTTTACATGGACCTGCCTGCATGGTTGACG ACGCCGACTGGCGACAGCACGAATCATACGCTCTGAAAAGAGCAGGTACA AGCTGAAGTGGGTGTCAGCGAGCCTCTTGCTTGCCTCTTCCCCTGTCGCT GCGGCGCTTAGCGGGTGTGTGTTGGCTCTGTCTTCTTTCTACTCCGTATA TTTGAACCATGCGGGACGGACAAACGCTTGATATGAATTCGAGGTAAAAA AAGATGCGTTGTTTTTCGCGCGGGTGTCGAATTAGTCTAAGGAAAGATCG AGGGAAACAGGGGTTGTTGCTGTTCCGATTTCGCAAGCTTGTGCCTAGAC TGCGCCCTACCTGGACCGCCCCGTTGCTGGTTTGTACCCTGCAGCAAAAA CCTTCCAGGTCACTCACACAACCATTCTCCTCTCAGCTCATCATCTCTTC CCACCCTCCTGCCGGCGACCGACCGATCTCCCGCCGCGAAAATCTCTTTT TTCCGGTGGCGATCGACCGATCTTTGTTCGGTAAACAGTAAACAACGAAA CAACGAAACACACAAAACGTAGGAAAGGACGCAACAGTTTTCTCACCTCC GCGATGAAATTCCAGTGGTTTGACACCAGCCTGACCTTCTCCTCAGTCAG CGTAGCGTGCCGGTTGATGTACTTCGGGAGGTAACCGTGATACCTCTCCT TCACCGAGACTCTCACTCGCACGCCCTGCGGCTGGGTCCCCGCCACGGGC GCAGTCTCCCTCGTGCTCGGCCCCTGCCCCATCCTGCTCTCTCTTCTCCT ACAAGTACTCGTTCGGAGAAGGAGAAAACAGAGAGCCGTGAGCTCTAACC TACCCAGAGAGCAACCGCTACCGTCTACCACCTACCACGACCCGTCAGGG AGACCGTGGGGGGGCGCCGGAGCGTCTATCCGTGTGCTTTACACACTCCC AGGGCAATGTGCGAGAGGGCTCTCCCATGTGTCTGTGTGCTTGCCTTGTG TTTGTGCGCCTGTGTGTATGTCTACAGCAGTACCTCTCTGTGTCTCCTCC CTTCAAATTTTGGATCTTCTGGGTGGTGGCTCCGCAGGGGCAGATCGTTG TTGCGACTTCTTGCGCAGCGAAATCCTTCGAAGCGGGAAATATGAATGAA AGGTGCTGCCTTCTTTTTTTGGGCAAAAAAAGGAAAAAGAGGCGGGACAA ATACGTCTGTCGACGTCGACGCGTCGACACAAAGCAGACACTTGTAGCAG CGCAAGCAATGGGGGATGCCGAAGGAGCTTGGATCGAGGCTAAAATTGCT GCACGCTCACGCAAAATCTGGCCCGGGTTCACGCGCATGCTCGCAGGACG CGTTGTGAGCATTAATTTGTTCTTTCTGGTGATAACACTCGCTCTCCCCC CCCTCTCTTGAACAAAATCAGGGTCAAGTATGATATGATACATTGGTGGG CTTGAACAGGAGTTTTTTTTGTTCCGGAAACATTCTCGGGGGTCATTCGG TCACGTCGAAACTTCTGATGTTGTTTGTCATGGGTCTGTATCGTGTTCTA GGCAGAATTAGTAGTCATCGACTGCCTCATCCTCCAGGGGAGGGATTGCT TTCTTCTTTAAGCGAGGCGACCGCTGTTTCCAAATTCGGGACTACAAACC CAATACCTGGATTCCTGTGGGGCCATCTTCCGTATTCATGCTGCGCGATT TTTTGAAGATATTGTAGCAATGATGTTTGCGTACAAAACATGTGCGCCTT GAATGCGCGTACAGCACAGCACTAGTACAACCACCATTTGTGTGCGTGCC TGCAGCAGGATGCTGTACATGTTTTAGTAGAGGCACAGGTACAGCAGTAG CTCGATGGCGAAAAAGCATTCTTCGGGAAAGAAGTGACGGAATACCCCGC TCAGTCGAACGCCAGGAACCGACCCACAGGTGGTGAGCAGTGGGACGAAG TCAGACAACAACGGTGGTTGAAACTGAGCGGGTGATTGAATCCCTCCGCA CAGAGCCAGGCAGGCCACCTGACTAGCAAGTACTTCGTAACAATTTCTTG TGATTGGTTTCGGAACCACGCAGGAAAGGGAAGAGTCGCTTTCAGGGGGT TGTCAACTCATCAAAGAAACATTTCTTAACGTGTTGTAAGAACATCAACA TACCAACATAAATGTCAGCATCGACTGAGGTACAGAGGAGAACCCAAGAC AGAACGTCTTAATTTGCGTCATGCCCCGTTTTCAAGAGCAACTCCGCACG TGTCGTCGGTGATCGATCGGTCCATTGCATGTCCAGTCGTCGCTGCCGTA CACCACAAGCTGAACCGCGCCAAGACAAGCCTCCTTCCTGTTCGCAGGAA TCAGACAAGCGCCCACTTGCTGCCGTCTATCTCGCTATAGATTACAAACC TCTCCCGAACCTGCTTCCCGTACTTGTGGCCCTTTCAAGCCCGGCCTGCA TGCATGCCTGCCTTGCCTTCCGTAGCATGCAACACCCCCCCCAGCTACAT CGTAGCAAAAGAAAGCGTAGCATCTAGTGCCGAGCGGTCGTAAGCGAAGA CACCGCTTGCCTGTATCCCGCTTGCCTGTATCCACGTGAGCTCAATCATC GAAAAAAAGATGAGCGTGCATGATAAGCATGATTCGGATGGCACGAAAAC ATAGATCACTGTCCTCAGTGCCATGGCAGCGAAACAGCCTCGCCGGCCCC CCTCCCCCCCTCCCCCCCGCTAAGCTCCCTCCCCTACAACAAGACGACCG TCGAGCCATCAACCCTCATCCTCCTCTTCGTCCATCCCGTTGGCTCCCCC TTCGGCGCCGTCCGCTTTTGCGTTGGCCTCGTCCTCTTCCGCCCCCCGGA GGTACAGCACGTTGTTACAGCGAATCAGAACGTCTCCCAAGTTCCCCGCG AACTCGCCGTCCACGTACTCCTCTGTCGACGTGAGGAGGAGGTTCATGTA AGTATCCACCGACACCAAGAATCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1461:172..4495-

>mRNA_H-canaliculatus_F_contig1461.3551.1 ID=mRNA_H-canaliculatus_F_contig1461.3551.1|Name=mRNA_H-canaliculatus_F_contig1461.3551.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=408bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1461:172..4495- (Hapterophycus canaliculatus Oshoro5f female)
ATGATATGTCCTGTCGGTTGGGCACGCAAGGTGACAGCGGGTGACACACC
AGCAATCAACCTCGAACAAATGGGATCCCAGATGATATGTCCTGTCGGTT
GGGCACGCAAGGTGACAGCGGGTGACACACCAGCAATCAACCTCGAACAA
ATGGGATCCCAGGTACAGCACGTTGTTACAGCGAATCAGAACGTCTCCCA
AGTTCCCCGCGAACTCGCCGTCCACGTACTCCTCTGTCGACGTGAGGAGG
AGGTTCATGTAAGTATCCACCGACACCAAGAATCCGTACAGCACGTTGTT
ACAGCGAATCAGAACGTCTCCCAAGTTCCCCGCGAACTCGCCGTCCACGT
ACTCCTCTGTCGACGTGAGGAGGAGGTTCATGTAAGTATCCACCGACACC
AAGAATCC
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