mRNA_H-canaliculatus_F_contig14609.3550.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14609.3550.1
Unique NamemRNA_H-canaliculatus_F_contig14609.3550.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14609.3550.1 vs. uniprot
Match: D7FIQ7_ECTSI (GRAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIQ7_ECTSI)

HSP 1 Score: 409 bits (1050), Expect = 1.540e-132
Identity = 230/308 (74.68%), Postives = 255/308 (82.79%), Query Frame = 1 
Query:    1 QAPMLSFAGTMARFTGRAGDDLFTAIRDALVERRMPLSFLATDAEEVSLDPYYVRDLVSMYAHENVVNLTRYALPLEEFVREEEERSARLEATLMPQYRANGLTPPRPTRSKPLSAYPLTTRRPPVSSCGVEEARQVMERAREYISAGGRGRGGEDTSDGERNDTSGNLGGDTDD--IFAGGXXXXGRRDAGIGEGSGS---APSSVADGIRSLIRATWEDVKDWCDEEAEARVRRKDAQVRDRLRAVERHRQSLVTVLRDAPGGSAAGGTSVGREFAARFRPMAEEAVLCQCKAVHAKRVGQLYLTC 909
            QAP+LS AGT+ARF+GR GDDL+TAIR+ LVER+MPLSFLATDAEEVSLDP+YVRDLV MYAHENVVNLTRYALPLEEFVR+EEER ARLEATL+PQYRA GL PPRPTRSKPLSAYPLTTRRPPVS+CGVEEAR+VMERARE++      RGG D+   ++       G D DD  +FA G XXX        EG G+   + SSVA+GIRSLIRATWEDVK+WCDEEAEARVRRKDAQVRDRL AVE HR++L+  LRD  GGSAA  T  GREFAARFRPMA+EAVLCQCKAVHAKRVGQLYLTC
Sbjct:  438 QAPILSLAGTIARFSGRTGDDLYTAIRNVLVERQMPLSFLATDAEEVSLDPHYVRDLVGMYAHENVVNLTRYALPLEEFVRQEEERLARLEATLLPQYRACGLAPPRPTRSKPLSAYPLTTRRPPVSACGVEEAREVMERAREHV------RGGGDSFPPQK-------GVDVDDENVFASGGXXXXXXXXXXDEGRGAKVGSGSSVAEGIRSLIRATWEDVKEWCDEEAEARVRRKDAQVRDRLLAVEGHREALIAALRDGAGGSAASSTPAGREFAARFRPMAKEAVLCQCKAVHAKRVGQLYLTC 732
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14609.3550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIQ7_ECTSI1.540e-13274.68GRAM domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14609contigH-canaliculatus_F_contig14609:476..2321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_000680.1
Exons4
Model size915
Cds size906
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14609.3550.1prot_H-canaliculatus_F_contig14609.3550.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14609 476..2312 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929210.467908-CDS-H-canaliculatus_F_contig14609:475..6851622929210.467908-CDS-H-canaliculatus_F_contig14609:475..685Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14609 476..685 -
1696845719.077709-CDS-H-canaliculatus_F_contig14609:475..6851696845719.077709-CDS-H-canaliculatus_F_contig14609:475..685Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14609 476..685 -
1622929210.4865263-CDS-H-canaliculatus_F_contig14609:898..12991622929210.4865263-CDS-H-canaliculatus_F_contig14609:898..1299Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14609 899..1299 -
1696845719.08725-CDS-H-canaliculatus_F_contig14609:898..12991696845719.08725-CDS-H-canaliculatus_F_contig14609:898..1299Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14609 899..1299 -
1622929210.5030737-CDS-H-canaliculatus_F_contig14609:1633..17731622929210.5030737-CDS-H-canaliculatus_F_contig14609:1633..1773Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14609 1634..1773 -
1696845719.097038-CDS-H-canaliculatus_F_contig14609:1633..17731696845719.097038-CDS-H-canaliculatus_F_contig14609:1633..1773Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14609 1634..1773 -
1622929210.5211375-CDS-H-canaliculatus_F_contig14609:2157..23121622929210.5211375-CDS-H-canaliculatus_F_contig14609:2157..2312Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14609 2158..2312 -
1696845719.1070797-CDS-H-canaliculatus_F_contig14609:2157..23121696845719.1070797-CDS-H-canaliculatus_F_contig14609:2157..2312Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14609 2158..2312 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929210.5419433-UTR-H-canaliculatus_F_contig14609:2312..23211622929210.5419433-UTR-H-canaliculatus_F_contig14609:2312..2321Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14609 2313..2321 -
1696845719.1180713-UTR-H-canaliculatus_F_contig14609:2312..23211696845719.1180713-UTR-H-canaliculatus_F_contig14609:2312..2321Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14609 2313..2321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14609.3550.1

>prot_H-canaliculatus_F_contig14609.3550.1 ID=prot_H-canaliculatus_F_contig14609.3550.1|Name=mRNA_H-canaliculatus_F_contig14609.3550.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=302bp
MLSFAGTMARFTGRAGDDLFTAIRDALVERRMPLSFLATDAEEVSLDPYY
VRDLVSMYAHENVVNLTRYALPLEEFVREEEERSARLEATLMPQYRANGL
TPPRPTRSKPLSAYPLTTRRPPVSSCGVEEARQVMERAREYISAGGRGRG
GEDTSDGERNDTSGNLGGDTDDIFAGGGGDDGRRDAGIGEGSGSAPSSVA
DGIRSLIRATWEDVKDWCDEEAEARVRRKDAQVRDRLRAVERHRQSLVTV
LRDAPGGSAAGGTSVGREFAARFRPMAEEAVLCQCKAVHAKRVGQLYLTC
K*
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mRNA from alignment at H-canaliculatus_F_contig14609:476..2321-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14609.3550.1 ID=mRNA_H-canaliculatus_F_contig14609.3550.1|Name=mRNA_H-canaliculatus_F_contig14609.3550.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1846bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14609:476..2321- (Hapterophycus canaliculatus Oshoro5f female)
CAGGCACCTATGCTGAGCTTCGCCGGAACGATGGCCCGTTTCACGGGTCG
CGCAGGCGACGACCTCTTCACGGCGATTCGCGACGCGCTCGTGGAGAGAC
GGATGCCCTTGAGCTTCCTGGCCACGGATGCGGAAGAGGTGTCGTTGGAC
CCGTATTACGTCCGGTGCGTCAACTCTCCCTGCCGGCAGTCTTTTTTCTC
ACCTGTACTGCCGCAATCCCTTTCTCGCAATGAGGTAGATGTTCGACGTG
TGGTGATGCAAACAGGGAGAGAAGACTGGCACCGCCTTCAGAATCTCCCC
TGACGGTTGTGGTTCCAATTTTCTTTTCGAGGGTAAAATGCCGTGTGGGT
GACTATCGGGAAATGCGTTTTCTTACGAGACTATGGTGTCGACGCTGCTC
GCGTGCGCGGCATAGACTGTACTGATATCGATGCGCCTGTGGGGGTCCCA
TAGCCCAAGCTCCTTTCATCGATCTCGAGTGTCACTTCTCAACCCGCGTT
TTGCCGTCGCCGACACGTGTTGCCACTGCTGTCCCGCCTCTCTCTCAGCG
ACCTCGTTAGCATGTACGCGCACGAGAACGTTGTGAACTTGACACGCTAC
GCGCTGCCGCTCGAGGAGTTTGTGAGGGAAGAGGAGGAACGATCCGCGCG
GCTGGAGGCCACCTTGATGCCGCAGTATCGCGCAAACGGTGAGAGTGCTG
GCCTTGGTCTTACTCGGCAGTTCTGCCGTCAACAACCGCGAGCTGTGAGA
TAATGGTTTTTTCGATGGTTGACGCTTTGATGACGTCAGTGGGATTGACA
TTCCTCGCTATCTTCGGGGGCGATGACAACTGGACGAGATTGAAAGTAGG
CCTTCAAGTGCCGAGGGTGTGAGAAAGAGAGGAAGAGCGAAACAGCTTGA
TCGACACCGACGCTGTTAGTGTTACTACACCCGATCTCGCAACACCTCGA
AAAAATGACCCGAGGCCTGGCCCTTCTTGTTTATCACTCTCTCTCGTTTT
TTGTGCCTTCTTGTTGGCGCAGGCCTAACACCCCCGCGACCAACGCGCTC
GAAGCCCCTGTCGGCGTACCCCCTGACCACCCGGCGCCCGCCGGTGTCGT
CCTGCGGGGTGGAGGAGGCAAGACAGGTCATGGAGCGAGCACGGGAATAC
ATCTCCGCCGGGGGCCGCGGCCGCGGCGGTGAAGACACGAGCGACGGCGA
GAGAAACGATACGAGCGGAAACCTCGGTGGCGATACTGATGACATTTTTG
CTGGTGGTGGCGGGGACGACGGGCGAAGAGACGCGGGGATCGGGGAGGGA
TCGGGATCAGCACCTTCCTCAGTGGCGGACGGCATCCGATCGTTGATACG
CGCGACGTGGGAGGACGTGAAGGATTGGTGTGACGAGGAGGCGGAGGCCA
GGGTCCGGCGGAAGGACGCGCAGGTCAGGACCCCAAAGCCGGTCCCCCTC
AATCCTTACCCCCGATACTTCCGTCCTCTCCACGCGCGAATCGTAACTCA
CTTCCTTCATTGGCCTCTTTCTTCTTTGATTTTGCTCGCGGCCATCACCA
CCCCTCGCTCCCCAAGGTTCAAAAATCGAATTCGAACCGGCACGCCCCTC
GCCTCGTTCGTCGCCTTCTCCCGTCCATCACCCCAGGTTCGAGATCGCCT
GCGAGCGGTGGAACGCCACCGCCAGTCATTGGTTACCGTACTCCGGGATG
CCCCCGGCGGTTCGGCTGCCGGCGGGACTTCGGTGGGGCGAGAATTTGCC
GCCCGCTTCCGACCCATGGCGGAAGAGGCCGTTCTCTGCCAGTGCAAGGC
GGTCCACGCGAAGCGCGTCGGGCAGCTGTATCTGACGTGCAAGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14609:476..2321-

>mRNA_H-canaliculatus_F_contig14609.3550.1 ID=mRNA_H-canaliculatus_F_contig14609.3550.1|Name=mRNA_H-canaliculatus_F_contig14609.3550.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1812bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14609:476..2321- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGAGCTTCGCCGGAACGATGGCCCGTTTCACGGGTCGCGCAGGCGA
CGACCTCTTCACGGCGATTCGCGACGCGCTCGTGGAGAGACGGATGCCCT
TGAGCTTCCTGGCCACGGATGCGGAAGAGGTGTCGTTGGACCCGTATTAC
GTCCGATGCTGAGCTTCGCCGGAACGATGGCCCGTTTCACGGGTCGCGCA
GGCGACGACCTCTTCACGGCGATTCGCGACGCGCTCGTGGAGAGACGGAT
GCCCTTGAGCTTCCTGGCCACGGATGCGGAAGAGGTGTCGTTGGACCCGT
ATTACGTCCGCGACCTCGTTAGCATGTACGCGCACGAGAACGTTGTGAAC
TTGACACGCTACGCGCTGCCGCTCGAGGAGTTTGTGAGGGAAGAGGAGGA
ACGATCCGCGCGGCTGGAGGCCACCTTGATGCCGCAGTATCGCGCAAACG
CGACCTCGTTAGCATGTACGCGCACGAGAACGTTGTGAACTTGACACGCT
ACGCGCTGCCGCTCGAGGAGTTTGTGAGGGAAGAGGAGGAACGATCCGCG
CGGCTGGAGGCCACCTTGATGCCGCAGTATCGCGCAAACGGCCTAACACC
CCCGCGACCAACGCGCTCGAAGCCCCTGTCGGCGTACCCCCTGACCACCC
GGCGCCCGCCGGTGTCGTCCTGCGGGGTGGAGGAGGCAAGACAGGTCATG
GAGCGAGCACGGGAATACATCTCCGCCGGGGGCCGCGGCCGCGGCGGTGA
AGACACGAGCGACGGCGAGAGAAACGATACGAGCGGAAACCTCGGTGGCG
ATACTGATGACATTTTTGCTGGTGGTGGCGGGGACGACGGGCGAAGAGAC
GCGGGGATCGGGGAGGGATCGGGATCAGCACCTTCCTCAGTGGCGGACGG
CATCCGATCGTTGATACGCGCGACGTGGGAGGACGTGAAGGATTGGTGTG
ACGAGGAGGCGGAGGCCAGGGTCCGGCGGAAGGACGCGCAGGCCTAACAC
CCCCGCGACCAACGCGCTCGAAGCCCCTGTCGGCGTACCCCCTGACCACC
CGGCGCCCGCCGGTGTCGTCCTGCGGGGTGGAGGAGGCAAGACAGGTCAT
GGAGCGAGCACGGGAATACATCTCCGCCGGGGGCCGCGGCCGCGGCGGTG
AAGACACGAGCGACGGCGAGAGAAACGATACGAGCGGAAACCTCGGTGGC
GATACTGATGACATTTTTGCTGGTGGTGGCGGGGACGACGGGCGAAGAGA
CGCGGGGATCGGGGAGGGATCGGGATCAGCACCTTCCTCAGTGGCGGACG
GCATCCGATCGTTGATACGCGCGACGTGGGAGGACGTGAAGGATTGGTGT
GACGAGGAGGCGGAGGCCAGGGTCCGGCGGAAGGACGCGCAGGTTCGAGA
TCGCCTGCGAGCGGTGGAACGCCACCGCCAGTCATTGGTTACCGTACTCC
GGGATGCCCCCGGCGGTTCGGCTGCCGGCGGGACTTCGGTGGGGCGAGAA
TTTGCCGCCCGCTTCCGACCCATGGCGGAAGAGGCCGTTCTCTGCCAGTG
CAAGGCGGTCCACGCGAAGCGCGTCGGGCAGCTGTATCTGACGTGCAAGT
GAGTTCGAGATCGCCTGCGAGCGGTGGAACGCCACCGCCAGTCATTGGTT
ACCGTACTCCGGGATGCCCCCGGCGGTTCGGCTGCCGGCGGGACTTCGGT
GGGGCGAGAATTTGCCGCCCGCTTCCGACCCATGGCGGAAGAGGCCGTTC
TCTGCCAGTGCAAGGCGGTCCACGCGAAGCGCGTCGGGCAGCTGTATCTG
ACGTGCAAGTGA
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