mRNA_H-canaliculatus_F_contig1458.3532.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1458.3532.1
Unique NamemRNA_H-canaliculatus_F_contig1458.3532.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1458.3532.1 vs. uniprot
Match: A0A6H5JN11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN11_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 3.830e-12
Identity = 72/188 (38.30%), Postives = 91/188 (48.40%), Query Frame = 1 
Query:  940 GAGEAPENEEDVCALFATTMPRDVWANPSLAALAALIDEDEEAKQESGEAKQAEKMDDQEPTSS--HYAAPRPYQANTTSDN--EGAGPSL-GAQSSQQNLNIASAKRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGRGTGGSSGRNGXRGGATQSQRSGPTPGETQVLMSLWGL 1488
            G  E  E +EDVCALFAT+MPRDVWANPSLAALAA+IDED E K++        ++D QE +SS  H  APR   ++ + D   +G  P + GA S+  N N      +                                      RR +G   SSGR+       + + S PT GETQVLMSLW L
Sbjct:    4 GTVEEQEKDEDVCALFATSMPRDVWANPSLAALAAMIDEDAEEKEK--------QVDGQEHSSSNDHQGAPREGSSSISDDGNEDGLAPRIQGAHSTTANQNGVRGGTTPTSGSRHQRREDMRRRRTERRASPYGPAAG--------RRVQGKHISSGRS-----VVRDRGSAPTTGETQVLMSLWRL 170
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1458.3532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JN11_9PHAE3.830e-1238.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1458contigH-canaliculatus_F_contig1458:21911..23942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1688
Cds size855
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1458.3532.1prot_H-canaliculatus_F_contig1458.3532.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1458 22547..23745 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929206.8669338-UTR-H-canaliculatus_F_contig1458:21910..225461622929206.8669338-UTR-H-canaliculatus_F_contig1458:21910..22546Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1458 21911..22546 +
1696845717.725938-UTR-H-canaliculatus_F_contig1458:21910..225461696845717.725938-UTR-H-canaliculatus_F_contig1458:21910..22546Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1458 21911..22546 +
1622929206.9110203-UTR-H-canaliculatus_F_contig1458:23745..239421622929206.9110203-UTR-H-canaliculatus_F_contig1458:23745..23942Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1458 23746..23942 +
1696845717.7608542-UTR-H-canaliculatus_F_contig1458:23745..239421696845717.7608542-UTR-H-canaliculatus_F_contig1458:23745..23942Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1458 23746..23942 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929206.8844404-CDS-H-canaliculatus_F_contig1458:22546..230061622929206.8844404-CDS-H-canaliculatus_F_contig1458:22546..23006Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1458 22547..23006 +
1696845717.7421553-CDS-H-canaliculatus_F_contig1458:22546..230061696845717.7421553-CDS-H-canaliculatus_F_contig1458:22546..23006Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1458 22547..23006 +
1622929206.896708-CDS-H-canaliculatus_F_contig1458:23350..237451622929206.896708-CDS-H-canaliculatus_F_contig1458:23350..23745Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1458 23351..23745 +
1696845717.7518935-CDS-H-canaliculatus_F_contig1458:23350..237451696845717.7518935-CDS-H-canaliculatus_F_contig1458:23350..23745Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1458 23351..23745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1458.3532.1

>prot_H-canaliculatus_F_contig1458.3532.1 ID=prot_H-canaliculatus_F_contig1458.3532.1|Name=mRNA_H-canaliculatus_F_contig1458.3532.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=285bp
MLRGHVMAIGWGNIKSACLWARDERAMLINIEFHLTVSVDPFLYTFGNAS
FTPTIICAIVVLPLTAAEGTRLTMDVQPTSSSRDTSASLAGEKMDEMGDG
RGAGEAPENEEDVCALFATTMPRDVWANPSLAALAALIDEDEEAKQESGE
AKQAEKMDDQEPTSSHYAAPRPYQANTTSDNEGAGPSLGAQSSQQNLNIA
SAKRSSRSSSSSTASSATCHRREETIRRRNERRASPYASAAAARRGRGTG
GSSGRNGGRGGATQSQRSGPTPGETQVLMSLWGL*
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mRNA from alignment at H-canaliculatus_F_contig1458:21911..23942+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1458.3532.1 ID=mRNA_H-canaliculatus_F_contig1458.3532.1|Name=mRNA_H-canaliculatus_F_contig1458.3532.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2032bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1458:21911..23942+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGGAATCTATTGAGAAGGTCAATAACGGCGCAGCAGTCTCACGTCGTA
GAAGAAAGACTTGGAATGTGCGCCGTAGGAGGTACGTGCTTACGTGCGCG
GCTCAAAAGATTGGAAGCATTTCCATCTTGTTCTGTTTTGTCCTGAAGAT
AGGAAAAAGGGCAACGTCCCAGCGTTAGAAAAGTGGGCCTTTTGGAAGAA
AGACGAAAGTCAAACTACGTACTTGATACGTCGGTTGTCGGTTGCGCGTA
TCCACAGGAAAAAATAGGTCCGCCTTGGCTGCACAGCTCAGCAGCAGGTT
GTATCGGCGCTACTCATGCTCCTAGATGCCTGCGATTTGCTCCCGATGGT
TTATTTATTTCGTCTTGTGCCACCATCGTCATATTGATTGAGAGATTTGA
CCCTGCCTGATACAACTACTATCAGCTACTATGCACATCTGCAGCATACT
TGTAGCAGTCTACAGAGCATGAAATATTTCAACGACTGACAAGTCATCTA
CGACTGCTTTTAATATTTTCCGCGTCATATTTAGTGTAAGTTTCAAAGTA
GGGAGAGGCTCTTCTCTTGTGGATCTAGTCTATTGGGATAGCAGGCGCGG
GATCGAGCTGCTAAAAGACCTGTGCGCCGCAGGGCGATGCTTCGCGGACA
CGTCATGGCAATCGGTTGGGGAAACATCAAAAGTGCGTGTTTGTGGGCAA
GGGATGAACGTGCCATGCTTATCAACATTGAGTTTCACTTAACTGTAAGC
GTTGACCCTTTCCTGTATACATTTGGCAACGCATCATTTACCCCCACTAT
CATATGTGCCATCGTGGTCCTCCCCCTCACGGCAGCTGAAGGCACCAGGT
TAACGATGGACGTACAGCCTACATCGAGCTCCAGGGATACCAGTGCCTCC
TTGGCGGGCGAGAAGATGGATGAGATGGGCGATGGTCGAGGAGCAGGCGA
GGCACCTGAGAATGAGGAAGACGTCTGCGCGCTGTTTGCGACGACCATGC
CTCGAGATGTCTGGGCCAACCCATCTTTGGCAGCCTTGGCGGCCCTGATC
GACGAGGACGAAGAGGCCAAACAAGAGAGTGGCGAGGCTAAACAAGGTAC
CCGTGACCAAAAGCACTGTGAGAGCAAGCCCGCCTGTCCGCGTCGTTAGG
GGAGAGGAGGTTCAAAAAGTCTGGATCCGGAAAGCTGTCCGTCGCTGGCG
AAAGCCGCCATCTTGCTGTCGTCTCGTGAGGGAGACTGCTGTAGATAAGT
TCGCCCGTGATGAGCCCGTGGCGTCATCGGCGTCATCATCAAGGCCGTGT
TAGCGTTCGAAAGTGAAAGGTGTCGGCGAAGCACGCAATCAAATACGCAG
TTTCGCTGATGAGTTACGTCTGTCGGCGCGAACGTGATGTGCTGCCGTCG
GAACGCTGCCTGCCTGCCTGCCGTTCTCCGGTTTTGACAGCGGAAAAAAT
GGACGATCAGGAGCCCACCAGTAGCCATTATGCCGCGCCACGACCATACC
AGGCCAACACCACCTCCGACAACGAGGGGGCGGGTCCATCACTAGGAGCT
CAATCTTCTCAACAGAATCTGAACATCGCGAGCGCAAAAAGGAGCAGTAG
GAGCAGCAGCAGCAGCACAGCCTCTAGCGCGACGTGTCATCGAAGGGAGG
AGACGATACGCAGACGAAACGAGCGCAGAGCGTCGCCCTATGCCTCAGCT
GCCGCCGCTCGGCGAGGGCGGGGTACAGGCGGATCATCGGGAAGAAATGG
TGGCAGGGGAGGGGCAACGCAGAGCCAAAGATCGGGGCCAACACCAGGAG
AAACCCAAGTGTTGATGTCCCTGTGGGGGTTGTAGCGAGCCCGTTACATG
GGTACCATGTTCCGACCTCTGGGACTACCCCGTGGTGATGCTTTTTTGGC
CGATCAACGAAAGGACCGCCTGAGATGGAGACCATCTCTGTCCACGTATC
TGTAGCACTTTGTGCATTTAAATGGGCCGCCGCGAGGTTTGCAGCAAGTA
TCACCTATACTTCGCCGCGTGTACAATACGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1458:21911..23942+

>mRNA_H-canaliculatus_F_contig1458.3532.1 ID=mRNA_H-canaliculatus_F_contig1458.3532.1|Name=mRNA_H-canaliculatus_F_contig1458.3532.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1710bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1458:21911..23942+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTTCGCGGACACGTCATGGCAATCGGTTGGGGAAACATCAAAAGTGC
GTGTTTGTGGGCAAGGGATGAACGTGCCATGCTTATCAACATTGAGTTTC
ACTTAACTGTAAGCGTTGACCCTTTCCTGTATACATTTGGCAACGCATCA
TTTACCCCCACTATCATATGTGCCATCGTGGTCCTCCCCCTCACGGCAGC
TGAAGGCACCAGGTTAACGATGGACGTACAGCCTACATCGAGCTCCAGGG
ATACCAGTGCCTCCTTGGCGGGCGAGAAGATGGATGAGATGGGCGATGGT
CGAGGAGCAGGCGAGGCACCTGAGAATGAGGAAGACGTCTGCGCGCTGTT
TGCGACGACCATGCCTCGAGATGTCTGGGCCAACCCATCTTTGGCAGCCT
TGGCGGCCCTGATCGACGAGGACGAAGAGGCCAAACAAGAGAGTGGCGAG
GCTAAACAAGATGCTTCGCGGACACGTCATGGCAATCGGTTGGGGAAACA
TCAAAAGTGCGTGTTTGTGGGCAAGGGATGAACGTGCCATGCTTATCAAC
ATTGAGTTTCACTTAACTGTAAGCGTTGACCCTTTCCTGTATACATTTGG
CAACGCATCATTTACCCCCACTATCATATGTGCCATCGTGGTCCTCCCCC
TCACGGCAGCTGAAGGCACCAGGTTAACGATGGACGTACAGCCTACATCG
AGCTCCAGGGATACCAGTGCCTCCTTGGCGGGCGAGAAGATGGATGAGAT
GGGCGATGGTCGAGGAGCAGGCGAGGCACCTGAGAATGAGGAAGACGTCT
GCGCGCTGTTTGCGACGACCATGCCTCGAGATGTCTGGGCCAACCCATCT
TTGGCAGCCTTGGCGGCCCTGATCGACGAGGACGAAGAGGCCAAACAAGA
GAGTGGCGAGGCTAAACAAGCGGAAAAAATGGACGATCAGGAGCCCACCA
GTAGCCATTATGCCGCGCCACGACCATACCAGGCCAACACCACCTCCGAC
AACGAGGGGGCGGGTCCATCACTAGGAGCTCAATCTTCTCAACAGAATCT
GAACATCGCGAGCGCAAAAAGGAGCAGTAGGAGCAGCAGCAGCAGCACAG
CCTCTAGCGCGACGTGTCATCGAAGGGAGGAGACGATACGCAGACGAAAC
GAGCGCAGAGCGTCGCCCTATGCCTCAGCTGCCGCCGCTCGGCGAGGGCG
GGGTACAGGCGGATCATCGGGAAGAAATGGTGGCAGGGGAGGGGCAACGC
AGAGCCAAAGATCGGGGCCAACACCAGGAGAAACCCAAGTGTTGATGTCC
CTGTGGGGGTTGTAGCGGAAAAAATGGACGATCAGGAGCCCACCAGTAGC
CATTATGCCGCGCCACGACCATACCAGGCCAACACCACCTCCGACAACGA
GGGGGCGGGTCCATCACTAGGAGCTCAATCTTCTCAACAGAATCTGAACA
TCGCGAGCGCAAAAAGGAGCAGTAGGAGCAGCAGCAGCAGCACAGCCTCT
AGCGCGACGTGTCATCGAAGGGAGGAGACGATACGCAGACGAAACGAGCG
CAGAGCGTCGCCCTATGCCTCAGCTGCCGCCGCTCGGCGAGGGCGGGGTA
CAGGCGGATCATCGGGAAGAAATGGTGGCAGGGGAGGGGCAACGCAGAGC
CAAAGATCGGGGCCAACACCAGGAGAAACCCAAGTGTTGATGTCCCTGTG
GGGGTTGTAG
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