mRNA_H-canaliculatus_F_contig1457.3526.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1457.3526.1
Unique NamemRNA_H-canaliculatus_F_contig1457.3526.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1457.3526.1 vs. uniprot
Match: D8LT33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT33_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 7.440e-50
Identity = 86/103 (83.50%), Postives = 90/103 (87.38%), Query Frame = 1 
Query:    1 GPRGLTRGMSASVMRVMIGSAAQLSSYSSCKAAVLGTGLFEDNVYAYLMSSMVAGLVVTTAMNPLDVISTRLYTQGTGVTERYKGPLDCAAKTIKIEGFRGVS 309
            G RGLTRG SASVMRVM+GSA QLS YSSCKAAVLGTGLFEDNVYAYL SS+ AGLVVTT MNPLDV+STRLY QGTGV ERY GPLDCA KT+  EGFRGVS
Sbjct:  218 GLRGLTRGTSASVMRVMVGSATQLSVYSSCKAAVLGTGLFEDNVYAYLSSSLAAGLVVTTTMNPLDVVSTRLYAQGTGVAERYTGPLDCAVKTVSAEGFRGVS 320
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BLAST of mRNA_H-canaliculatus_F_contig1457.3526.1 vs. uniprot
Match: A0A6H5L6Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z3_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 4.830e-49
Identity = 85/102 (83.33%), Postives = 89/102 (87.25%), Query Frame = 1 
Query:    1 GPRGLTRGMSASVMRVMIGSAAQLSSYSSCKAAVLGTGLFEDNVYAYLMSSMVAGLVVTTAMNPLDVISTRLYTQGTGVTERYKGPLDCAAKTIKIEGFRGV 306
            G RGLTRG SASVMRVM+GSA QLS YSSCKAAVLGTGLFEDNVYAYL SS VAGLVVTT MNPLDV+STRLY QGTGV ERY GPLDCA KT+  EGFRG+
Sbjct:  177 GLRGLTRGTSASVMRVMVGSATQLSVYSSCKAAVLGTGLFEDNVYAYLASSSVAGLVVTTTMNPLDVVSTRLYAQGTGVAERYTGPLDCAVKTVSAEGFRGL 278
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BLAST of mRNA_H-canaliculatus_F_contig1457.3526.1 vs. uniprot
Match: A0A835YMV3_9STRA (Solute carrier family 25 member 34 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMV3_9STRA)

HSP 1 Score: 117 bits (293), Expect = 4.650e-30
Identity = 63/101 (62.38%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:    1 GPRGLTRGMSASVMRVMIGSAAQLSSYSSCKAAVLGTGLFEDNVYAYLMSSMVAGLVVTTAMNPLDVISTRLYTQGTGVTERYKGPLDCAAKTIKIEGFRG 303
            G RGL RGM A+V RVM GSAAQLSSYSSCK  V  TG F   +Y Y+ SS+VAGLVVTT MNP DV+STRLY+Q       Y GP+DC  KT + EG RG
Sbjct:  146 GWRGLARGMDAAVPRVMAGSAAQLSSYSSCKRLVQSTGFFHSELYTYIASSLVAGLVVTTVMNPFDVVSTRLYSQSAKHLV-YTGPIDCFKKTFRAEGLRG 245
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BLAST of mRNA_H-canaliculatus_F_contig1457.3526.1 vs. uniprot
Match: A0A7S1DNG7_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DNG7_HEMAN)

HSP 1 Score: 107 bits (268), Expect = 1.070e-27
Identity = 54/101 (53.47%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:    1 GPRGLTRGMSASVMRVMIGSAAQLSSYSSCKAAVLGTGLFEDNVYAYLMSSMVAGLVVTTAMNPLDVISTRLYTQGTGVTERYKGPLDCAAKTIKIEGFRG 303
            G +GL RG+  ++ RVM+GS +QL+SY S K  +L +GL  + V  +L SSM++GLVVTT MNP DV+STRLY Q  G    Y GP+DC AKT++ EGF G
Sbjct:   14 GVKGLFRGIDGAIPRVMVGSGSQLASYDSTKRWLLSSGLVNEGVALHLASSMMSGLVVTTIMNPFDVVSTRLYNQAQGAGRVYSGPVDCFAKTLRAEGFGG 114
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BLAST of mRNA_H-canaliculatus_F_contig1457.3526.1 vs. uniprot
Match: A0A485KSQ5_9STRA (Aste57867_11310 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KSQ5_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.670e-25
Identity = 59/106 (55.66%), Postives = 74/106 (69.81%), Query Frame = 1 
Query:    1 GPRGLTRGMSASVMRVMIGSAAQLSSYSSCKAAVLGTGLFEDNVYAYLMSSMVAGLVVTTAMNPLDVISTRLYTQ----GTGVTERYKGPLDCAAKTIKIEGFRGV 306
            G  GL RG++ ++ RV +GSAAQLS+Y+S K  VL TGL ED V+ +L +S+V GL VTTAMNP DV+STRLY+Q    G GV   Y G LDC  KT  +EG RG+
Sbjct:  175 GVMGLYRGVNGAIPRVAVGSAAQLSTYASSKHIVLSTGLLEDGVWCHLAASLVTGLAVTTAMNPFDVVSTRLYSQKVVDGKGVL--YSGVLDCFKKTFGVEGVRGL 278
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BLAST of mRNA_H-canaliculatus_F_contig1457.3526.1 vs. uniprot
Match: A0A024UT24_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UT24_9STRA)

HSP 1 Score: 105 bits (262), Expect = 4.340e-25
Identity = 59/106 (55.66%), Postives = 74/106 (69.81%), Query Frame = 1 
Query:    1 GPRGLTRGMSASVMRVMIGSAAQLSSYSSCKAAVLGTGLFEDNVYAYLMSSMVAGLVVTTAMNPLDVISTRLYTQ----GTGVTERYKGPLDCAAKTIKIEGFRGV 306
            G  GL RG++ ++ RV +GSAAQLS+Y+S K  VL TGL ED V+ +L +S+V GL VTTAMNP DV+STRLY+Q    G GV   Y G LDC  KT  +EG RG+
Sbjct:  192 GVLGLYRGVNGAIPRVAVGSAAQLSTYASSKHLVLSTGLVEDGVWCHLAASLVTGLAVTTAMNPFDVVSTRLYSQKVVDGKGVL--YSGVLDCFKKTFGVEGVRGL 295
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BLAST of mRNA_H-canaliculatus_F_contig1457.3526.1 vs. uniprot
Match: UCPA_DICDI (Mitochondrial substrate carrier family protein ucpA n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=UCPA_DICDI)

HSP 1 Score: 103 bits (258), Expect = 1.150e-24
Identity = 58/104 (55.77%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:    1 GPRGLTRGMSASVMRVMIGSAAQLSSYSSCKAAVLGTGLFEDNVYAYLMSSMVAGLVVTTAMNPLDVISTRLYTQGTGVT--ERYKGPLDCAAKTIKIEGFRGV 306
            G +GLTRGM  S  R  +GSA QLS+Y SCK  VL     +D +YAY++SSMVAG +VT  MNP DV  TRLY QG G +  E YKG +DC  KT+K EGF  V
Sbjct:  172 GFKGLTRGMLTSAQRTAVGSAIQLSTYGSCKNLVLN--FVDDGIYAYIISSMVAGFIVTFGMNPFDVARTRLYFQGKGNSHGEIYKGLMDCVYKTVKKEGFGAV 273
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BLAST of mRNA_H-canaliculatus_F_contig1457.3526.1 vs. uniprot
Match: D3BUR4_POLPP (Transmembrane protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BUR4_POLPP)

HSP 1 Score: 102 bits (255), Expect = 5.350e-24
Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:    1 GPRGLTRGMSASVMRVMIGSAAQLSSYSSCKAAVLGTGLFEDNVYAYLMSSMVAGLVVTTAMNPLDVISTRLYTQGTGVT--ERYKGPLDCAAKTIKIEGF 297
            G RGLTRGM+ S  R  +GS+ QLS+Y   K  ++     ED++YA+L+SS+VAGL VT  MNP DV  TRLY QG G T  E+YK  +DC  KT+K+EGF
Sbjct:  200 GFRGLTRGMATSAQRTAVGSSIQLSTYFETKRFIINKTGMEDDIYAHLLSSLVAGLFVTVGMNPFDVARTRLYYQGQGNTHGEKYKSLMDCIYKTVKVEGF 300
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BLAST of mRNA_H-canaliculatus_F_contig1457.3526.1 vs. uniprot
Match: A0A6A5AIL5_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AIL5_9STRA)

HSP 1 Score: 102 bits (254), Expect = 6.760e-24
Identity = 58/106 (54.72%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    1 GPRGLTRGMSASVMRVMIGSAAQLSSYSSCKAAVLGTGLFEDNVYAYLMSSMVAGLVVTTAMNPLDVISTRLYTQ----GTGVTERYKGPLDCAAKTIKIEGFRGV 306
            G  GL RG++ +V RV +GSAAQLS+Y+S K  VL TGL ED +  +L +S+V GL VTTAMNP DV+STRLY+Q    G GV   Y G +DC  KT   EG RG+
Sbjct:  196 GVLGLYRGVNGAVPRVAVGSAAQLSTYASSKHLVLSTGLLEDGILCHLAASLVTGLAVTTAMNPFDVVSTRLYSQKVVNGQGVL--YSGVIDCFKKTFGAEGVRGL 299
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BLAST of mRNA_H-canaliculatus_F_contig1457.3526.1 vs. uniprot
Match: A0A6G0XPW9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPW9_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.520e-23
Identity = 57/103 (55.34%), Postives = 70/103 (67.96%), Query Frame = 1 
Query:   10 GLTRGMSASVMRVMIGSAAQLSSYSSCKAAVLGTGLFEDNVYAYLMSSMVAGLVVTTAMNPLDVISTRLYTQ----GTGVTERYKGPLDCAAKTIKIEGFRGV 306
            GL RG++ +V RV IGSAAQ+S+Y+S K  VL TGL ED V  +  SS+V G+ VTTAMNP DV+STRLY+Q    G GV   Y G +DC  KT   EG RG+
Sbjct:  175 GLYRGVNGAVPRVAIGSAAQMSTYASSKHLVLSTGLLEDGVLCHFASSLVTGVAVTTAMNPFDVVSTRLYSQKVVDGKGVL--YSGVIDCFRKTFGAEGVRGL 275
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1457.3526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT33_ECTSI7.440e-5083.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6Z3_9PHAE4.830e-4983.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YMV3_9STRA4.650e-3062.38Solute carrier family 25 member 34 n=1 Tax=Tribone... [more]
A0A7S1DNG7_HEMAN1.070e-2753.47Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A485KSQ5_9STRA1.670e-2555.66Aste57867_11310 protein n=1 Tax=Aphanomyces stella... [more]
A0A024UT24_9STRA4.340e-2555.66Uncharacterized protein n=4 Tax=Aphanomyces invada... [more]
UCPA_DICDI1.150e-2455.77Mitochondrial substrate carrier family protein ucp... [more]
D3BUR4_POLPP5.350e-2453.47Transmembrane protein n=1 Tax=Polysphondylium pall... [more]
A0A6A5AIL5_9STRA6.760e-2454.72Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A6G0XPW9_9STRA2.520e-2355.34Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1457contigH-canaliculatus_F_contig1457:23564..24344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue2.5e-36
Seed eggNOG ortholog2880.D8LT33
Preferred nameSLC25A34
KEGG koko:K15117,ko:K15348
KEGG TC2.A.29.15
KEGG Pathwayko05132,map05132
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006839,GO:0008150,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0055085
EggNOG free text desc.isopropylmalate transmembrane transporter activity
EggNOG OGsKOG0755@1,KOG0755@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1457.3526.1prot_H-canaliculatus_F_contig1457.3526.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1457 23588..24344 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929206.5575504-UTR-H-canaliculatus_F_contig1457:23563..235871622929206.5575504-UTR-H-canaliculatus_F_contig1457:23563..23587Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1457 23564..23587 +
1696845717.6253977-UTR-H-canaliculatus_F_contig1457:23563..235871696845717.6253977-UTR-H-canaliculatus_F_contig1457:23563..23587Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1457 23564..23587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929206.5726163-CDS-H-canaliculatus_F_contig1457:23587..237001622929206.5726163-CDS-H-canaliculatus_F_contig1457:23587..23700Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1457 23588..23700 +
1696845717.640828-CDS-H-canaliculatus_F_contig1457:23587..237001696845717.640828-CDS-H-canaliculatus_F_contig1457:23587..23700Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1457 23588..23700 +
1622929206.5861669-CDS-H-canaliculatus_F_contig1457:24154..243441622929206.5861669-CDS-H-canaliculatus_F_contig1457:24154..24344Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1457 24155..24344 +
1696845717.6549575-CDS-H-canaliculatus_F_contig1457:24154..243441696845717.6549575-CDS-H-canaliculatus_F_contig1457:24154..24344Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1457 24155..24344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1457.3526.1

>prot_H-canaliculatus_F_contig1457.3526.1 ID=prot_H-canaliculatus_F_contig1457.3526.1|Name=mRNA_H-canaliculatus_F_contig1457.3526.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=101bp
MSASVMRVMIGSAAQLSSYSSCKAAVLGTGLFEDNVYAYLMSSMVAGLVV
TTAMNPLDVISTRLYTQGTGVTERYKGPLDCAAKTIKIEGFRGVSVRKQS
*
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mRNA from alignment at H-canaliculatus_F_contig1457:23564..24344+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1457.3526.1 ID=mRNA_H-canaliculatus_F_contig1457.3526.1|Name=mRNA_H-canaliculatus_F_contig1457.3526.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=781bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1457:23564..24344+ (Hapterophycus canaliculatus Oshoro5f female)
GGGCCTCGCGGGCTGACCAGAGGCATGAGCGCGTCCGTCATGAGAGTCAT
GATAGGATCAGCGGCTCAGCTGTCTTCGTACTCCTCCTGCAAGGCGGCCG
TCTTGGGAACGGGGTTGTTCGAGGACAATGTATACGCGTGAGGGCATTTA
GTTTTGAATCGTTTGTGTTCCACAGTCTCGCCCCACCCTTGGTACACGCT
GTTGCTTGCGTTTTGTTCAGTGGCGTTTTGTATGCTGGGGGTGAAGCAGT
TACGGTAATGGTAGTCATAAAACCGAAACGTAGGCCGCACTTGCATCTTG
CTTCGCGTGAAGCGGTTGGTGCGAGAGCTTTTCGGACAAGAGCAGTCCCC
CGTACATGAACTTGCGGGAGCTCCCCCCCGTGTCAGTTTGGCATACGTGG
TGTGTGGGTGTTCTGGATGGTGGATAGCCAGAGCGTGGCGTTCCCCAACC
ACCACCACGCTTGCACGTGGCTGACTGCATCTAGCGTTCACCATTTGCAA
CAGAGGGGTTTGCGCGAGCCAATCAAAAAACTCAAATTGGCAACGTTTTG
AGCCGTCCGCCCCCCCGTGCCCAATCCTGTCGTCAAACCAGGTACCTCAT
GTCCAGCATGGTGGCGGGGCTTGTGGTCACGACGGCCATGAACCCCCTGG
ACGTGATTAGCACCAGGCTGTACACGCAAGGGACCGGCGTCACGGAGCGT
TACAAGGGACCCTTAGACTGCGCGGCCAAGACCATCAAAATCGAGGGATT
CAGAGGAGTGAGTGTACGGAAGCAAAGTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1457:23564..24344+

>mRNA_H-canaliculatus_F_contig1457.3526.1 ID=mRNA_H-canaliculatus_F_contig1457.3526.1|Name=mRNA_H-canaliculatus_F_contig1457.3526.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=606bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1457:23564..24344+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCGCGTCCGTCATGAGAGTCATGATAGGATCAGCGGCTCAGCTGTC
TTCGTACTCCTCCTGCAAGGCGGCCGTCTTGGGAACGGGGTTGTTCGAGG
ACAATGTATACGCATGAGCGCGTCCGTCATGAGAGTCATGATAGGATCAG
CGGCTCAGCTGTCTTCGTACTCCTCCTGCAAGGCGGCCGTCTTGGGAACG
GGGTTGTTCGAGGACAATGTATACGCGTACCTCATGTCCAGCATGGTGGC
GGGGCTTGTGGTCACGACGGCCATGAACCCCCTGGACGTGATTAGCACCA
GGCTGTACACGCAAGGGACCGGCGTCACGGAGCGTTACAAGGGACCCTTA
GACTGCGCGGCCAAGACCATCAAAATCGAGGGATTCAGAGGAGTGAGTGT
ACGGAAGCAAAGTTGAGTACCTCATGTCCAGCATGGTGGCGGGGCTTGTG
GTCACGACGGCCATGAACCCCCTGGACGTGATTAGCACCAGGCTGTACAC
GCAAGGGACCGGCGTCACGGAGCGTTACAAGGGACCCTTAGACTGCGCGG
CCAAGACCATCAAAATCGAGGGATTCAGAGGAGTGAGTGTACGGAAGCAA
AGTTGA
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