mRNA_H-canaliculatus_F_contig14566.3524.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14566.3524.1
Unique NamemRNA_H-canaliculatus_F_contig14566.3524.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14566.3524.1 vs. uniprot
Match: D7G5U6_ECTSI (FGGY_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U6_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 5.170e-50
Identity = 88/116 (75.86%), Postives = 90/116 (77.59%), Query Frame = 1 
Query:    7 RFGFSRDCVVVAGSGDNCNSLAGMGVL-------------------GGGGDLMVSLGTSDTLLGVTDDPSPTTTGNTMYHPCDPAAWFAMLVYKNGSLTREGVRDRRAGGDWDTFS 297
            RFGFSRDCVVVAGSGDNCNSLAGMGV+                    GGGD+MVSLGTSDTLLGVT DP PTTTGNTMYHPCDPAAWF MLVYKNGSLTRE VRDRRAGG WD FS
Sbjct:  300 RFGFSRDCVVVAGSGDNCNSLAGMGVIPSRDLGVAAAAGGAEGQGAAGGGDVMVSLGTSDTLLGVTTDPRPTTTGNTMYHPCDPAAWFVMLVYKNGSLTREAVRDRRAGGSWDVFS 415
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BLAST of mRNA_H-canaliculatus_F_contig14566.3524.1 vs. uniprot
Match: A0A453CCT4_AEGTS (FGGY_C domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453CCT4_AEGTS)

HSP 1 Score: 108 bits (270), Expect = 2.720e-28
Identity = 55/97 (56.70%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:    7 RFGFSRDCVVVAGSGDNCNSLAGMGVLGGGGDLMVSLGTSDTLLGVTDDPSPTTTGNTMYHPCDPAAWFAMLVYKNGSLTREGVRDRRAGGDWDTFS 297
            RF F+ +C+VV  SGDN NSLAG+  L   GDL +SLGTSDT+ GVTD P P+  GN + +P DP+ +  ML YKNGSLTRE +RDR A   WD F+
Sbjct:   11 RFQFTSNCLVVQWSGDNPNSLAGL-TLSNPGDLAISLGTSDTVFGVTDVPEPSLDGNILPNPVDPSTYMVMLCYKNGSLTREDIRDRYAEKSWDVFN 106
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BLAST of mRNA_H-canaliculatus_F_contig14566.3524.1 vs. uniprot
Match: A0A453CCT0_AEGTS (FGGY_C domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453CCT0_AEGTS)

HSP 1 Score: 108 bits (271), Expect = 4.380e-27
Identity = 55/99 (55.56%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:    1 AHRFGFSRDCVVVAGSGDNCNSLAGMGVLGGGGDLMVSLGTSDTLLGVTDDPSPTTTGNTMYHPCDPAAWFAMLVYKNGSLTREGVRDRRAGGDWDTFS 297
            + RF F+ +C+VV  SGDN NSLAG+  L   GDL +SLGTSDT+ GVTD P P+  GN + +P DP+ +  ML YKNGSLTRE +RDR A   WD F+
Sbjct:   36 SERFQFTSNCLVVQWSGDNPNSLAGL-TLSNPGDLAISLGTSDTVFGVTDVPEPSLDGNILPNPVDPSTYMVMLCYKNGSLTREDIRDRYAEKSWDVFN 133
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BLAST of mRNA_H-canaliculatus_F_contig14566.3524.1 vs. uniprot
Match: A0A453CCS0_AEGTS (FGGY_C domain-containing protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453CCS0_AEGTS)

HSP 1 Score: 108 bits (270), Expect = 1.450e-26
Identity = 55/97 (56.70%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:    7 RFGFSRDCVVVAGSGDNCNSLAGMGVLGGGGDLMVSLGTSDTLLGVTDDPSPTTTGNTMYHPCDPAAWFAMLVYKNGSLTREGVRDRRAGGDWDTFS 297
            RF F+ +C+VV  SGDN NSLAG+  L   GDL +SLGTSDT+ GVTD P P+  GN + +P DP+ +  ML YKNGSLTRE +RDR A   WD F+
Sbjct:   11 RFQFTSNCLVVQWSGDNPNSLAGL-TLSNPGDLAISLGTSDTVFGVTDVPEPSLDGNILPNPVDPSTYMVMLCYKNGSLTREDIRDRYAEKSWDVFN 106
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BLAST of mRNA_H-canaliculatus_F_contig14566.3524.1 vs. uniprot
Match: UPI001F5C3F51 (xylulose kinase 2-like n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5C3F51)

HSP 1 Score: 110 bits (276), Expect = 2.700e-26
Identity = 56/97 (57.73%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:    7 RFGFSRDCVVVAGSGDNCNSLAGMGVLGGGGDLMVSLGTSDTLLGVTDDPSPTTTGNTMYHPCDPAAWFAMLVYKNGSLTREGVRDRRAGGDWDTFS 297
            RF FSR+C+VV  SGDN NSLAG+  L   GDL +SLGTSDT+ G+TD P P+  GN + +P DP  +  ML YKNGSLTRE +RDR A   WD F+
Sbjct:  273 RFQFSRNCLVVQWSGDNPNSLAGL-TLSSPGDLAISLGTSDTVFGITDMPEPSLDGNILPNPVDPKTYMVMLCYKNGSLTREDIRDRYAEKSWDVFN 368
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BLAST of mRNA_H-canaliculatus_F_contig14566.3524.1 vs. uniprot
Match: A0A0E0MPX9_ORYPU (Uncharacterized protein n=2 Tax=Oryza TaxID=4527 RepID=A0A0E0MPX9_ORYPU)

HSP 1 Score: 110 bits (275), Expect = 4.420e-26
Identity = 57/97 (58.76%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:    7 RFGFSRDCVVVAGSGDNCNSLAGMGVLGGGGDLMVSLGTSDTLLGVTDDPSPTTTGNTMYHPCDPAAWFAMLVYKNGSLTREGVRDRRAGGDWDTFS 297
            RF FS  C+VV  SGDN NSLAG+  L   GDL +SLGTSDT+ G+TD P P+  GN + +P DP  +  ML YKNGSLTRE VRDR A G WD F+
Sbjct:  377 RFQFSSKCLVVQWSGDNPNSLAGL-TLSDPGDLAISLGTSDTVFGITDLPEPSLDGNILPNPVDPKTYMVMLCYKNGSLTREDVRDRYAEGSWDVFN 472
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BLAST of mRNA_H-canaliculatus_F_contig14566.3524.1 vs. uniprot
Match: B9GEF2_ORYSJ (Uncharacterized protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=B9GEF2_ORYSJ)

HSP 1 Score: 109 bits (273), Expect = 5.730e-26
Identity = 56/97 (57.73%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:    7 RFGFSRDCVVVAGSGDNCNSLAGMGVLGGGGDLMVSLGTSDTLLGVTDDPSPTTTGNTMYHPCDPAAWFAMLVYKNGSLTREGVRDRRAGGDWDTFS 297
            RF FS +C+VV  SGDN NSLAG+  L   GDL +SLGTSDT+ G+TD P P+  GN + +P DP  +  ML YKNGSLTRE VR+R A G WD F+
Sbjct:  225 RFQFSSNCLVVQWSGDNPNSLAGL-TLSDPGDLAISLGTSDTVFGITDLPEPSLDGNILPNPVDPKTYMVMLCYKNGSLTREDVRNRYADGSWDVFN 320
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BLAST of mRNA_H-canaliculatus_F_contig14566.3524.1 vs. uniprot
Match: A0A0P0YD07_ORYSJ (Xylulose kinase n=5 Tax=Oryza TaxID=4527 RepID=A0A0P0YD07_ORYSJ)

HSP 1 Score: 109 bits (273), Expect = 6.970e-26
Identity = 56/97 (57.73%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:    7 RFGFSRDCVVVAGSGDNCNSLAGMGVLGGGGDLMVSLGTSDTLLGVTDDPSPTTTGNTMYHPCDPAAWFAMLVYKNGSLTREGVRDRRAGGDWDTFS 297
            RF FS +C+VV  SGDN NSLAG+  L   GDL +SLGTSDT+ G+TD P P+  GN + +P DP  +  ML YKNGSLTRE VR+R A G WD F+
Sbjct:  275 RFQFSSNCLVVQWSGDNPNSLAGL-TLSDPGDLAISLGTSDTVFGITDLPEPSLDGNILPNPVDPKTYMVMLCYKNGSLTREDVRNRYADGSWDVFN 370
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14566.3524.1 vs. uniprot
Match: A0A453CCX1_AEGTS (Uncharacterized protein n=4 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453CCX1_AEGTS)

HSP 1 Score: 108 bits (270), Expect = 8.240e-26
Identity = 55/97 (56.70%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:    7 RFGFSRDCVVVAGSGDNCNSLAGMGVLGGGGDLMVSLGTSDTLLGVTDDPSPTTTGNTMYHPCDPAAWFAMLVYKNGSLTREGVRDRRAGGDWDTFS 297
            RF F+ +C+VV  SGDN NSLAG+  L   GDL +SLGTSDT+ GVTD P P+  GN + +P DP+ +  ML YKNGSLTRE +RDR A   WD F+
Sbjct:  274 RFQFTSNCLVVQWSGDNPNSLAGL-TLSNPGDLAISLGTSDTVFGVTDVPEPSLDGNILPNPVDPSTYMVMLCYKNGSLTREDIRDRYAEKSWDVFN 369
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14566.3524.1 vs. uniprot
Match: A0A835FM62_9POAL (Xylulose kinase n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835FM62_9POAL)

HSP 1 Score: 109 bits (272), Expect = 9.510e-26
Identity = 54/97 (55.67%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:    7 RFGFSRDCVVVAGSGDNCNSLAGMGVLGGGGDLMVSLGTSDTLLGVTDDPSPTTTGNTMYHPCDPAAWFAMLVYKNGSLTREGVRDRRAGGDWDTFS 297
            RF F+  C+V+  SGDN NSLAG+  L   GDL +SLGTSDT+ G+TD P PT  GN + +P DP  +  +L YKNGSLTRE +RDR A   WDTF+
Sbjct:  275 RFQFASSCLVIQWSGDNPNSLAGL-TLSNPGDLAISLGTSDTVFGITDSPEPTLEGNILPNPVDPKTYMVLLCYKNGSLTREDLRDRYAERSWDTFN 370
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14566.3524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5U6_ECTSI5.170e-5075.86FGGY_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A453CCT4_AEGTS2.720e-2856.70FGGY_C domain-containing protein n=1 Tax=Aegilops ... [more]
A0A453CCT0_AEGTS4.380e-2755.56FGGY_C domain-containing protein n=1 Tax=Aegilops ... [more]
A0A453CCS0_AEGTS1.450e-2656.70FGGY_C domain-containing protein n=2 Tax=Aegilops ... [more]
UPI001F5C3F512.700e-2657.73xylulose kinase 2-like n=2 Tax=Lolium rigidum TaxI... [more]
A0A0E0MPX9_ORYPU4.420e-2658.76Uncharacterized protein n=2 Tax=Oryza TaxID=4527 R... [more]
B9GEF2_ORYSJ5.730e-2657.73Uncharacterized protein n=1 Tax=Oryza sativa subsp... [more]
A0A0P0YD07_ORYSJ6.970e-2657.73Xylulose kinase n=5 Tax=Oryza TaxID=4527 RepID=A0A... [more]
A0A453CCX1_AEGTS8.240e-2656.70Uncharacterized protein n=4 Tax=Aegilops tauschii ... [more]
A0A835FM62_9POAL9.510e-2655.67Xylulose kinase n=1 Tax=Digitaria exilis TaxID=101... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14566contigH-canaliculatus_F_contig14566:175..798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue6.7e-42
Seed eggNOG ortholog2880.D7G5U6
Preferred nameXYLB
KEGG rclassRC00002,RC00538
KEGG koko:K00854,ko:K14288,ko:K16732
KEGG ReactionR01639
KEGG Pathwayko00040,ko01100,ko03013,map00040,map01100,map03013
KEGG ModuleM00014
GOsGO:0003674,GO:0003824,GO:0004856,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0005997,GO:0005998,GO:0006063,GO:0006064,GO:0006082,GO:0006091,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009987,GO:0016052,GO:0016054,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019200,GO:0019321,GO:0019323,GO:0019585,GO:0019637,GO:0019640,GO:0019752,GO:0031982,GO:0032787,GO:0043226,GO:0043227,GO:0043230,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044281,GO:0044282,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0046395,GO:0046835,GO:0051167,GO:0070062,GO:0071704,GO:0072329,GO:0090407,GO:1901135,GO:1901137,GO:1901159,GO:1901575,GO:1901576,GO:1903561
EggNOG free text desc.xylulokinase activity
EggNOG OGsCOG1070@1,KOG2531@2759
EC2.7.1.17
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons3
Model size303
Cds size303
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14566.3524.1prot_H-canaliculatus_F_contig14566.3524.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14566 175..798 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929206.390673-CDS-H-canaliculatus_F_contig14566:174..3051622929206.390673-CDS-H-canaliculatus_F_contig14566:174..305Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14566 175..305 -
1696845717.5526266-CDS-H-canaliculatus_F_contig14566:174..3051696845717.5526266-CDS-H-canaliculatus_F_contig14566:174..305Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14566 175..305 -
1622929206.4132347-CDS-H-canaliculatus_F_contig14566:578..6641622929206.4132347-CDS-H-canaliculatus_F_contig14566:578..664Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14566 579..664 -
1696845717.5637066-CDS-H-canaliculatus_F_contig14566:578..6641696845717.5637066-CDS-H-canaliculatus_F_contig14566:578..664Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14566 579..664 -
1622929206.4301152-CDS-H-canaliculatus_F_contig14566:712..7981622929206.4301152-CDS-H-canaliculatus_F_contig14566:712..798Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14566 713..798 -
1696845717.5719235-CDS-H-canaliculatus_F_contig14566:712..7981696845717.5719235-CDS-H-canaliculatus_F_contig14566:712..798Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14566 713..798 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14566.3524.1

>prot_H-canaliculatus_F_contig14566.3524.1 ID=prot_H-canaliculatus_F_contig14566.3524.1|Name=mRNA_H-canaliculatus_F_contig14566.3524.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=101bp
AHRFGFSRDCVVVAGSGDNCNSLAGMGVLGGGGDLMVSLGTSDTLLGVTD
DPSPTTTGNTMYHPCDPAAWFAMLVYKNGSLTREGVRDRRAGGDWDTFSA
*
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mRNA from alignment at H-canaliculatus_F_contig14566:175..798-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14566.3524.1 ID=mRNA_H-canaliculatus_F_contig14566.3524.1|Name=mRNA_H-canaliculatus_F_contig14566.3524.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=624bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14566:175..798- (Hapterophycus canaliculatus Oshoro5f female)
GCGCACAGATTCGGATTTTCGCGCGACTGCGTGGTCGTGGCCGGGAGCGG
CGACAACTGCAACTCCTTGGCGGGCATGGGTGTCCTGTCCGCCGGCAAGC
GCGACGGCGAGGACGATCCCGCCGCCGCCGACAGCGGGGGCGGCGGCGAC
TTGATGGTGAGCTTGGGAACGTCCGACACGCTGCTCGGAGTGACCGACGA
CCCGAGCCCGACAACGACAGGTAAACTTGGACAAGATCGAGATACAGACT
GGGTGGTTATTCTCGCGCGCTCAAGTTGTGGGCGGCTTCCTCCTTTCCGA
TCCGGTGGTGGGTGGGCTTGGCGGTTGTTGCTCGACACCCGCAGGGACAA
GGGCCCACGTGAAAGCGTTTGTCTTGTTCTGCCGTTCGCCGCCGGGCTCC
GCCCCACTCTCCTGCTGCTTTGCCCCGTTGCTGGCGGCGCTTGCTCCCTG
ATTTCCGCGAAAAAAACGCTCGGACGCCGCGGTGTTTCTTCAGGGAACAC
CATGTACCACCCTTGCGATCCCGCGGCGTGGTTCGCGATGCTGGTGTACA
AGAACGGCTCCCTGACGAGGGAAGGGGTGCGGGACAGGCGCGCCGGCGGG
GACTGGGACACCTTCTCCGCGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14566:175..798-

>mRNA_H-canaliculatus_F_contig14566.3524.1 ID=mRNA_H-canaliculatus_F_contig14566.3524.1|Name=mRNA_H-canaliculatus_F_contig14566.3524.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=606bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14566:175..798- (Hapterophycus canaliculatus Oshoro5f female)
GCGCACAGATTCGGATTTTCGCGCGACTGCGTGGTCGTGGCCGGGAGCGG
CGACAACTGCAACTCCTTGGCGGGCATGGGTGTCCTGCGCACAGATTCGG
ATTTTCGCGCGACTGCGTGGTCGTGGCCGGGAGCGGCGACAACTGCAACT
CCTTGGCGGGCATGGGTGTCCTCGGGGGCGGCGGCGACTTGATGGTGAGC
TTGGGAACGTCCGACACGCTGCTCGGAGTGACCGACGACCCGAGCCCGAC
AACGACAGCGGGGGCGGCGGCGACTTGATGGTGAGCTTGGGAACGTCCGA
CACGCTGCTCGGAGTGACCGACGACCCGAGCCCGACAACGACAGGGAACA
CCATGTACCACCCTTGCGATCCCGCGGCGTGGTTCGCGATGCTGGTGTAC
AAGAACGGCTCCCTGACGAGGGAAGGGGTGCGGGACAGGCGCGCCGGCGG
GGACTGGGACACCTTCTCCGCGTAAGGAACACCATGTACCACCCTTGCGA
TCCCGCGGCGTGGTTCGCGATGCTGGTGTACAAGAACGGCTCCCTGACGA
GGGAAGGGGTGCGGGACAGGCGCGCCGGCGGGGACTGGGACACCTTCTCC
GCGTAA
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