mRNA_H-canaliculatus_F_contig1455.3517.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1455.3517.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI) HSP 1 Score: 975 bits (2520), Expect = 1.730e-310 Identity = 788/1188 (66.33%), Postives = 848/1188 (71.38%), Query Frame = 1
Query: 1 RIVQGNGSGVIPAHRSKGVEFAFCPSLAGTFAESLSVTNVLDESNTQQITIKAKVYKPETFALVDPPEVMRLEPCLVGGEPPSGRLQGEARVLLRNTTARRRLFVIEGVDAFSAEKPAATGLRDSIESSIGAAXXXXXXXXXXXXXXXXXXXXGVGGAPTEAAPPTGNGFEAPSSSSAAAVTAGT--EGEAYKMRPFSPRTDPIASRVRLSSTGSDVTVGTDTSRNLHDSGSTSTTT-LTNFAEVTACTASFCFKLDTISAPGIPEVERQRMEEKLEHYQFKLRIAERKGREAKVAKMHKKIDRMRRQLAGETLGSGDEGEETGVSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDSEVSVGITVAFTPGASFQGWEGGHLFRGIIRLYESRNEDVVKELPCVAQVYSSPLSYQAALLPSSSPSLADENEEREALSPSXXXXXXXXXXXXXXXXXXXXXXQLASTDGGRGRKTSERAPAVR-PPRSPSGGPTSXXXXXXXXXXXXXXXXSMHNYANPLSLSDPAFGIGGGNGAGVAAVNSKSSLDVAAVAFGTGSRGXXXXXXXXGTRXXXXXXDPTSPRGG-GFPELLRQGTIRVLSGGHGTKGPRNDQKGELSPEDKGHGDGGVGGDGADDATSSRFIVGSPSGGRRNGLFAPVPQRPDRSPSPVLSGGLLENSRTVT----AIGVTPRVGGRSPSPMSRVLRRTSFPPNPRPWNFMDLRG-ETVG--SRSRSPGSPRT--GGAADEAHDPACVNS-----ITRRSSTSSAGPAFSDGVSSTRGRVETAEDMIISDGE-NEPPLFATVAQFCTLGVAEEGGTVATAAAPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFPQGNNGGCAAAVSEGVRMVLSSVDHDG--GATATTGSGGSSASPGMFSLHSVVSQDVIVKVSWDDESARRLGILP-APS-SPAFLFRAESPTNGAQTASASPPAGVLAAVLHGGSTLDVSVKLDGTLSVPVGRWCVGAAVVTVIDQHHHPLGDGHVAHGAXXXXXXXXXXXIGVGGHKLFVPIVLEALPDSCLGVVRKVDLGVVALDSSTPSSFEVTNLSSGPAPLRFVVMV-AGKPATNGLLLTNQQTGTVQPRESMSVSFTFHATSVGRWTHDFAVRNLSNKHDQA 3489
+I QGNG+GVIPAHRSK VEFAFCPSLAGTFAESLSVTNVL ESNTQ ITIKAKVYKPETFALVDPPEVMRLEPCLVG EP S R GEARVLLRNTTARRRLFVIEG+DAFSA + AA G + XXXXXXXXXXXXXXXXXXXX TEA P G G + S A T G EGE+ K RPFSPR+D +ASRVRL S GSDVT+GTD SRNLHDSGSTSTT LTNFAEVTACTA+FCFKLD +SAPGIPEVERQRMEEKLE YQFKLRIAERKGRE KVAKMHKKIDRMRRQLAGETLGSGDEGEETG+SEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SEV+VGI V+FTPGASFQGWEGGHLFRGIIRLYESRNEDVVKELPC AQVYSS L+YQAA++P SPSL DE EE E LSP XXXXXXXX Q+ ST+ RGRKT R + PPRSPSGG XXXXXXXXXXX +H + P+S +P F GNG G A SLD A G XXXXXXXX R SPRGG G PEL RQ T+RVLSG G + + + L APVP RPDRSPSP L G LE +T A T R GGRSPSP S ++RR SFP + R W+FMD RG + G SRSRSPGSP + G A D+AHD S + RR ST P+ G S+ T+ED+ +D +EPPLFATVAQFCTLGVAEE ++AA A+ XXXXXXXXXXXXXXXXXXXXXX +AVSEGV+MVLSS D +G GAT T GMFSLHSV SQD+IVKVSWDDESARRLG+LP AP+ +PAFLFRAESP NG QTA+ASPPAGVLAAVLH GSTLDVSVKLDGT+SVPVGRWCVGA VVTVIDQHH P DG VAHG XXXXXXXXX GHKLFVPIVLEALPDSCLGV RK+DLG VALDS T SSFEVTNLSSGP P FVVMV A K TN LLLTNQQTGTVQP ES+ VSF+FHATS+GRWTHD AVRNL NKHDQA
Sbjct: 1380 KIPQGNGNGVIPAHRSKAVEFAFCPSLAGTFAESLSVTNVLAESNTQVITIKAKVYKPETFALVDPPEVMRLEPCLVG-EPLSARPPGEARVLLRNTTARRRLFVIEGIDAFSAARSAAPGRDSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTEAVLPAGEGLDTSS-----ATTGGXXGEGESAKSRPFSPRSDFMASRVRLCSAGSDVTIGTDASRNLHDSGSTSTTAVLTNFAEVTACTANFCFKLDAVSAPGIPEVERQRMEEKLERYQFKLRIAERKGRETKVAKMHKKIDRMRRQLAGETLGSGDEGEETGMSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XSEVAVGIAVSFTPGASFQGWEGGHLFRGIIRLYESRNEDVVKELPCFAQVYSSALAYQAAVVPPGSPSLVDETEELEVLSP-------LMQHQPPXXXXXXXXLQVMSTEASRGRKTVPRGGVLLLPPRSPSGG--XXXXXXXXXXXXAIGGGPLHGF--PVSAPNPVFA---GNGGGAVA-----SLDPA------GGXXXXXXXXXXSPR--------ASPRGGKGLPELSRQ-TMRVLSGERGDQQIHHPYRPXXXXXXX-----------XXXXXXXXXXXXXXXXXXXXXLLAPVPWRPDRSPSPPLDVGSLEGFQTAAGGHHAAFPTRRPGGRSPSPSSGLVRRASFPASVRSWSFMDHRGGDRAGRSSRSRSPGSPSSVGGRALDDAHDQQAARSGGSGALARRCSTP---PSARSGFSAAG--AATSEDLNAADAAASEPPLFATVAQFCTLGVAEE-----SSAAQAATGETDAADAPQSAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAVSEGVKMVLSSADREGEGGATQT----------GMFSLHSVASQDIIVKVSWDDESARRLGVLPPAPAPAPAFLFRAESPANGVQTAAASPPAGVLAAVLHAGSTLDVSVKLDGTVSVPVGRWCVGAVVVTVIDQHHQPFNDGSVAHGPGGXXXXXXXXXXX--GHKLFVPIVLEALPDSCLGVARKLDLGTVALDSITSSSFEVTNLSSGPTPFSFVVMVVASKSPTNSLLLTNQQTGTVQPGESVEVSFSFHATSIGRWTHDLAVRNLGNKHDQA 2493
BLAST of mRNA_H-canaliculatus_F_contig1455.3517.1 vs. uniprot
Match: A0A6H5KWQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ8_9PHAE) HSP 1 Score: 523 bits (1348), Expect = 1.130e-154 Identity = 424/785 (54.01%), Postives = 469/785 (59.75%), Query Frame = 1
Query: 1162 GITVAFTPGASFQGWEGGHLFRGIIRLYESRNEDVVKELPCVAQVYSSPLSYQAALLPSSSPSLADENEEREALSPSXXXXXXXXXXXXXXXXXXXXXXQLASTDGGRGRKTSERAPAVRPPRSPSGGPTSXXXXXXXXXXXXXXXXSMHNYANPLSLSDPAFGIGGGNGAGVAAVNSKSSLDVAAVAFGTGSRGXXXXXXXXGTRXXXXXXDPTSPRGG-GFPELLRQGTIRVLSGGHGTKGPRNDQKGELSPEDKGHGDGGVGGDGADDATSSRFIVGSPSGGRRNGLFAPVPQRPDRSPSPVLSGGLLENSRTVT----AIGVTPRVGGRSPSPMSRVLRRTSFPPNPRPWNFMDLRG---ETVGSRSRSPGSPRT--GGAADEAHDPACVNS-----ITRRSSTS-SAGPAFSDGVSSTRGRVETAEDMIISDGENEPPLFATVAQFCTLGVAEEGGTVATAAAPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFPQGNNGGCAAAVSEGVRMVLSSV--DHDGGATATTGSGGSSASPGMFSLHSVVSQDVIVKVSWDDESARRLGILPAPSSPAFLFRAESPTNGAQTASASPPAGVLAAVLHGGSTLDVSVKLDGTLSVPVGRWCVGAAVVTVIDQHHHPLGDGHVAHGAXXXXXXXXXXXIGVGGHKLFVPIVLEALPDSCLGVVRKVDLGVVALDSSTPSSFEVTNLSSGPAPLRFVVMVAGKPATNGLLLTNQQTGTVQPRESMSVSFTFHATSVGRWTHDFAVR 3462
GI V+FTPGASF+GWEGGHLFRGIIRLYESRNEDVVKELPC AQVYSS L+YQAA++P SPSL DE E+ E LSP XXXX Q ST+ RG KT R A+ P XXXXXXXXXXXX S+H + P+ DP F GG SLD + XXXX XXX P SPR G G EL RQ T+RVL+G G + + + L APV RPDRSPSP L GG LE +T A T R GGRSPSP S + RR SFP + R W+ MD RG SRS SPGSP + G A D+AHD S +TR SST S P FS +T ++TA + +EPPLFATVAQFCTLGVAEE G AA + XXXXXXXXXXXXXXXXXXX LFP +AVSEGV+MVLSS + +GGAT T GMFSLHSV S+D+IV SWDDESARRLG+LPAPS PAFLFRAESP NG QTA+ASPPAGVLAAVLH GSTLDVSVKLDGT+SVPVGRWCVGA VVTVI QH+ P DG VAHG XXXXX G G HKLFVPIVLEALPDSCLGV RK+DLG VALDS T SSFE+TNLSSGPAPL LLLTNQQTGTVQP ES+ VSF+FHATSVGRWTHD A +
Sbjct: 46 GIAVSFTPGASFKGWEGGHLFRGIIRLYESRNEDVVKELPCFAQVYSSALAYQAAVVPPGSPSLVDETEQLEVLSP-------LMQQQPPXXXXPQPQLQATSTEASRGHKTITRGGALLLPXXXXXX-XXXXXXXXXXXXXXIGGGSLHGF--PVPAPDPVFASNGGXX--------XXSLDPS--------------XXXXRXXXXXRGSPPASPRSGEGLSELSRQ-TMRVLTGERGDQQIHHPYRPXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXLLAPVSWRPDRSPSPSLDGGSLEGFQTAAGGQHAAFPTRRPGGRSPSPSSGLKRRASFPASVRSWDLMDHRGGGRAGRNSRSSSPGSPSSVGGRALDDAHDQQAARSGGSGALTRGSSTPPSPRPGFSGAGGATSEDLDTAGAAV-----SEPPLFATVAQFCTLGVAEESGAAQAAATGETDAAGAPXXXXXXXXXXXXXXXXXXXAMLPL------LFPXXXX--XXSAVSEGVKMVLSSAGREGEGGATQT----------GMFSLHSVASEDIIV--SWDDESARRLGVLPAPS-PAFLFRAESPANGVQTAAASPPAGVLAAVLHAGSTLDVSVKLDGTVSVPVGRWCVGAVVVTVIGQHYQPFNDGSVAHGPGGXXXXXGVA--GAGDHKLFVPIVLEALPDSCLGVARKLDLGTVALDSITSSSFELTNLSSGPAPL-------------SLLLTNQQTGTVQPGESVQVSFSFHATSVGRWTHDLAAK 747
BLAST of mRNA_H-canaliculatus_F_contig1455.3517.1 vs. uniprot
Match: A0A835YYQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ9_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 1.880e-16 Identity = 53/83 (63.86%), Postives = 61/83 (73.49%), Query Frame = 1
Query: 76 SLAGTFAESLSVTNVLDESNTQQITIKAKVYKPETFALVDPPEVMRLEPCLVGGEPPSGRLQGEARVLLRNTTARRRLFVIEG 324
SLAG FAE+LSVTNV DESNTQ ITIKAKVYKPETFALV PP + PCLVG + +V +RNTT+R+R FV+EG
Sbjct: 4 SLAGAFAEALSVTNVQDESNTQVITIKAKVYKPETFALVSPPTEVSFGPCLVGEA-----ARTLVKVCVRNTTSRKRQFVVEG 81
BLAST of mRNA_H-canaliculatus_F_contig1455.3517.1 vs. uniprot
Match: A0A7S1J032_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J032_9EUGL) HSP 1 Score: 60.1 bits (144), Expect = 3.790e-6 Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = 1
Query: 25 GVIPAHRSKGVEFAFCPSLAGTFAESLSVTNVLDESNTQQITIKAKVYKPETFALVDPPEVMRLEPCLVGGEPPSGRLQGEARVLLRNTTARRRLFVI 318
G++ +K ++F F PSL G F E+L+V NVLDE+NTQ IT+KA V K ETF P + C+ G+ G RV + NT+ ++R F +
Sbjct: 44 GLVAPFATKELDFVFTPSLPGKFQETLTVGNVLDETNTQIITVKAAVEKSETFETK--PNSLDFG-CIDAGKRSKG-----LRVCISNTSKQKRNFYL 133 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1455.3517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1455.3517.1 >prot_H-canaliculatus_F_contig1455.3517.1 ID=prot_H-canaliculatus_F_contig1455.3517.1|Name=mRNA_H-canaliculatus_F_contig1455.3517.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=1163bp RIVQGNGSGVIPAHRSKGVEFAFCPSLAGTFAESLSVTNVLDESNTQQITback to top mRNA from alignment at H-canaliculatus_F_contig1455:14999..26627- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1455.3517.1 ID=mRNA_H-canaliculatus_F_contig1455.3517.1|Name=mRNA_H-canaliculatus_F_contig1455.3517.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=11629bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1455:14999..26627- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1455:14999..26627- >mRNA_H-canaliculatus_F_contig1455.3517.1 ID=mRNA_H-canaliculatus_F_contig1455.3517.1|Name=mRNA_H-canaliculatus_F_contig1455.3517.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=6978bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1455:14999..26627- (Hapterophycus canaliculatus Oshoro5f female)back to top |