mRNA_H-canaliculatus_F_contig1453.3507.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1453.3507.1
Unique NamemRNA_H-canaliculatus_F_contig1453.3507.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1453.3507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1453contigH-canaliculatus_F_contig1453:21861..22799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_006200.1
Exons3
Model size462
Cds size462
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1453.3507.1prot_H-canaliculatus_F_contig1453.3507.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1453 21861..22799 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929203.9724095-CDS-H-canaliculatus_F_contig1453:21860..219941622929203.9724095-CDS-H-canaliculatus_F_contig1453:21860..21994Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1453 21861..21994 +
1696845716.6344519-CDS-H-canaliculatus_F_contig1453:21860..219941696845716.6344519-CDS-H-canaliculatus_F_contig1453:21860..21994Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1453 21861..21994 +
1622929203.9908202-CDS-H-canaliculatus_F_contig1453:22199..223851622929203.9908202-CDS-H-canaliculatus_F_contig1453:22199..22385Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1453 22200..22385 +
1696845716.6465209-CDS-H-canaliculatus_F_contig1453:22199..223851696845716.6465209-CDS-H-canaliculatus_F_contig1453:22199..22385Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1453 22200..22385 +
1622929204.002728-CDS-H-canaliculatus_F_contig1453:22657..227991622929204.002728-CDS-H-canaliculatus_F_contig1453:22657..22799Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1453 22658..22799 +
1696845716.6546307-CDS-H-canaliculatus_F_contig1453:22657..227991696845716.6546307-CDS-H-canaliculatus_F_contig1453:22657..22799Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1453 22658..22799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1453.3507.1

>prot_H-canaliculatus_F_contig1453.3507.1 ID=prot_H-canaliculatus_F_contig1453.3507.1|Name=mRNA_H-canaliculatus_F_contig1453.3507.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=154bp
MYSLRTQEKLDAERNHTSSRQILWKNLSNRDKSGRMVRRIYRKTREEMAE
SCRTRRCEWVNNANADIRRWVREPQSSAFEHTFRDRKQEAEIGPSNGHVS
GRKYIPRLVFCGGGEIDRDKTADLMETLLEPSRMRGNDPNALQNPCRPTV
ALTD
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mRNA from alignment at H-canaliculatus_F_contig1453:21861..22799+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1453.3507.1 ID=mRNA_H-canaliculatus_F_contig1453.3507.1|Name=mRNA_H-canaliculatus_F_contig1453.3507.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=939bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1453:21861..22799+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTATTCACTGCGAACGCAGGAGAAGCTGGATGCTGAACGCAACCATAC
CTCCTCGCGACAAATTCTGTGGAAAAACCTTTCCAACAGAGACAAGTCCG
GCCGGATGGTGCGGCGAATCTACAGGAAGACAAGGTACGATTTTCGCTAG
GGGGCAACAGAGGTGTTTTTGCCTTCCGCAACAACGAAAAGTCAGTCGCA
TTTCGTTGTGCTTGCACATCCTACGCTCCATGTTCAAAGGTGGTCCAAGA
AGCACGGTCTACAAACATGTCACATGAAATCACCGAAACAGAACAAACAT
CAAATGCACATCCTGTATTTCCGCGGGGTTCGAAATCAGGGAGGAAATGG
CGGAGTCTTGCCGAACCAGGCGCTGTGAGTGGGTCAACAATGCAAATGCA
GACATCAGGAGATGGGTCAGAGAACCACAGTCGTCGGCATTCGAGCACAC
CTTCCGCGATCGGAAGCAAGAAGCAGAAATCGGCCCGTCAAACGGACACG
TTTCGGGTCGCAAATATATCCCGAGGTGCGACATACAAGGTACCCGGGGG
AAAATGCGGCAGCGTTGTTGGGCTCATCATGTTATCCACTCGTATTCGTT
CATCTTGTTGATTGTGGGTACCAACGCGCGAAATGAAGCGTGCCTTGTGT
TGGTCTGTGTACGTGGCGACAACTCTCTCGCAGTATTTTTCATGCGTCGT
AGGTCATGGAAAATATTAACAACACCCAACCCGACAGACCTCGGCGTCGA
AACAACCTAAAAGCATTTACCGCCTTGGATCCCCTACAAGTACTCAGATT
GGTCTTCTGCGGAGGTGGTGAGATTGACAGGGATAAGACAGCAGACTTGA
TGGAAACGCTGTTGGAGCCAAGCAGGATGCGAGGCAACGATCCGAACGCG
CTGCAGAATCCGTGCCGTCCGACAGTGGCTTTAACCGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1453:21861..22799+

>mRNA_H-canaliculatus_F_contig1453.3507.1 ID=mRNA_H-canaliculatus_F_contig1453.3507.1|Name=mRNA_H-canaliculatus_F_contig1453.3507.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=924bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1453:21861..22799+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTATTCACTGCGAACGCAGGAGAAGCTGGATGCTGAACGCAACCATAC
CTCCTCGCGACAAATTCTGTGGAAAAACCTTTCCAACAGAGACAAGTCCG
GCCGGATGGTGCGGCGAATCTACAGGAAGACAAGATGTATTCACTGCGAA
CGCAGGAGAAGCTGGATGCTGAACGCAACCATACCTCCTCGCGACAAATT
CTGTGGAAAAACCTTTCCAACAGAGACAAGTCCGGCCGGATGGTGCGGCG
AATCTACAGGAAGACAAGGGAGGAAATGGCGGAGTCTTGCCGAACCAGGC
GCTGTGAGTGGGTCAACAATGCAAATGCAGACATCAGGAGATGGGTCAGA
GAACCACAGTCGTCGGCATTCGAGCACACCTTCCGCGATCGGAAGCAAGA
AGCAGAAATCGGCCCGTCAAACGGACACGTTTCGGGTCGCAAATATATCC
CGAGGGAGGAAATGGCGGAGTCTTGCCGAACCAGGCGCTGTGAGTGGGTC
AACAATGCAAATGCAGACATCAGGAGATGGGTCAGAGAACCACAGTCGTC
GGCATTCGAGCACACCTTCCGCGATCGGAAGCAAGAAGCAGAAATCGGCC
CGTCAAACGGACACGTTTCGGGTCGCAAATATATCCCGAGATTGGTCTTC
TGCGGAGGTGGTGAGATTGACAGGGATAAGACAGCAGACTTGATGGAAAC
GCTGTTGGAGCCAAGCAGGATGCGAGGCAACGATCCGAACGCGCTGCAGA
ATCCGTGCCGTCCGACAGTGGCTTTAACCGACATTGGTCTTCTGCGGAGG
TGGTGAGATTGACAGGGATAAGACAGCAGACTTGATGGAAACGCTGTTGG
AGCCAAGCAGGATGCGAGGCAACGATCCGAACGCGCTGCAGAATCCGTGC
CGTCCGACAGTGGCTTTAACCGAC
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