mRNA_H-canaliculatus_F_contig14522.3504.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14522.3504.1
Unique NamemRNA_H-canaliculatus_F_contig14522.3504.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14522.3504.1 vs. uniprot
Match: D7G3L1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L1_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 7.480e-43
Identity = 84/139 (60.43%), Postives = 90/139 (64.75%), Query Frame = 1 
Query:    1 MAIARPIDTDYQAMLDDSEHGEGPAAEGRPRMVSLSRRQHPQERHHGEGSTQQE-EQLLRQGDDAGKGRKSKLRTVAGYIIVTEFCERLAYYGLSGSLVLLFEKELGMTNAQADTQFALWSGVCYVMPLFGGWIADSYL 414
            M + RP DTDYQAMLD    GE    E   +                        +     G  A KGRKSKL +VAGYIIVTEFCERLAYYG SGSLVLLFEKELG TNA++DTQFALWSGVCYVMPLFGGWIADSYL
Sbjct:   13 MRLTRPDDTDYQAMLD----GEAGVVEPHQQXXXXXXXXXXXXXXXXXXXXXXPADPAAADGAGADKGRKSKLYSVAGYIIVTEFCERLAYYGFSGSLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYL 147
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BLAST of mRNA_H-canaliculatus_F_contig14522.3504.1 vs. uniprot
Match: A0A6H5J9H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H6_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 3.840e-41
Identity = 86/138 (62.32%), Postives = 91/138 (65.94%), Query Frame = 1 
Query:    1 MAIARPIDTDYQAMLDDSEHGEGPAAEGRPRMVSLSRRQHPQERHHGEGSTQQEEQLLRQGDDAGKGRKSKLRTVAGYIIVTEFCERLAYYGLSGSLVLLFEKELGMTNAQADTQFALWSGVCYVMPLFGGWIADSYL 414
            M + RP DTDYQAMLD    GE    E   +  S                          G  AGKGRKSKL +VAGYIIVTEFCERLAYYG SGSLVLLFEKELG TNA++DTQFALWSGVCYVMPLFGGWIADSYL
Sbjct:   13 MRLTRPDDTDYQAMLD----GEAGEVEPHQQQASXXXXXXXXXXXXXXXXXGGPADPAADGAGAGKGRKSKLYSVAGYIIVTEFCERLAYYGFSGSLVLLFEKELGYTNAESDTQFALWSGVCYVMPLFGGWIADSYL 146
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BLAST of mRNA_H-canaliculatus_F_contig14522.3504.1 vs. uniprot
Match: W7TJG8_9STRA (Peptide transporter ptr1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJG8_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.690e-22
Identity = 42/64 (65.62%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:  223 VAGYIIVTEFCERLAYYGLSGSLVLLFEKELGMTNAQADTQFALWSGVCYVMPLFGGWIADSYL 414
            +  +I+VTEFCERL+YYG+ GSLVLLF+ +L  TNAQAD  +A+WSG+CY  PL GGW+ADSYL
Sbjct:   66 ICSFILVTEFCERLSYYGIGGSLVLLFQSQLNYTNAQADNAYAVWSGLCYCAPLLGGWLADSYL 129
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BLAST of mRNA_H-canaliculatus_F_contig14522.3504.1 vs. uniprot
Match: A0A7S3GU63_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU63_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 6.270e-19
Identity = 43/74 (58.11%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:  193 GKGRKSKLRTVAGYIIVTEFCERLAYYGLSGSLVLLFEKELGMTNAQADTQFALWSGVCYVMPLFGGWIADSYL 414
            G  R S L+  A YII TEFCERLAYYG +GSLVL F+ +L  +N +A   F LW+G  YV PL GG+IAD+YL
Sbjct:   13 GGDRPSVLKYTASYIIGTEFCERLAYYGFAGSLVLFFQTQLDYSNEEAVNAFYLWNGAVYVTPLLGGYIADTYL 86
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BLAST of mRNA_H-canaliculatus_F_contig14522.3504.1 vs. uniprot
Match: A0A7R9UH25_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UH25_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 5.700e-15
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:  262 LAYYGLSGSLVLLFEKELGMTNAQADTQFALWSGVCYVMPLFGGWIADSYL 414
            + YYGL+GSLVL F+  L   NA AD Q+++WSG CYV PLFGGW+ADSYL
Sbjct:    1 MTYYGLAGSLVLFFQSRLDYDNADADVQYSIWSGFCYVTPLFGGWLADSYL 51
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BLAST of mRNA_H-canaliculatus_F_contig14522.3504.1 vs. uniprot
Match: A0A1W0A228_9STRA (Proton-dependent Oligopeptide Transporter (POT) Family n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A228_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.070e-14
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:  205 KSKLRTVAGYIIVTEFCERLAYYGLSGSLVLLFEKELGMTNAQADTQFALWSGVCYVMPLFGGWIADSYL 414
            KS + +V  +I+VTEFCER AYYGL+GSL + F K LGMT+  A    +++S V Y+ PL G W+AD +L
Sbjct:   21 KSIILSVCSFILVTEFCERFAYYGLTGSLPIFFRKNLGMTSVLATELNSVFSCVTYITPLIGAWVADKFL 90
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BLAST of mRNA_H-canaliculatus_F_contig14522.3504.1 vs. uniprot
Match: A0A024TRW8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TRW8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.460e-14
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:  181 GDDAGKGRKSKLRTVAGYIIVTEFCERLAYYGLSGSLVLLFEKELGMTNAQADTQFALWSGVCYVMPLFGGWIADSYL 414
            GD   K  KS + +V  +I+VTEFCER AYYG +GSL + F K LGM++  A    ++++   Y+MPLFG ++AD YL
Sbjct:   21 GDAPKKAYKSIILSVCSFILVTEFCERFAYYGFTGSLPIFFRKHLGMSSVLATELNSVFTCCTYIMPLFGAFVADRYL 98
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BLAST of mRNA_H-canaliculatus_F_contig14522.3504.1 vs. uniprot
Match: A0A1D2AG98_AUXPR (Uncharacterized protein n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2AG98_AUXPR)

HSP 1 Score: 79.3 bits (194), Expect = 1.480e-14
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:  181 GDDAGKGRKSKLRTVAGYIIVTEFCERLAYYGLSGSLVLLFEKELGMTNAQADTQFALWSGVCYVMPLFGGWIADS 408
            GD+  +  +S L TV  +I+  EFCERLAYYGLS +L+L   + +G  +  A  Q +L+SG CY+ PL G W+ADS
Sbjct:   16 GDEPPRKHRSTLLTVCPFILGNEFCERLAYYGLSTNLILYLTRVMGEESGHAALQVSLFSGTCYLTPLLGAWLADS 91
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BLAST of mRNA_H-canaliculatus_F_contig14522.3504.1 vs. uniprot
Match: A0A6A4ZKB2_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZKB2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.240e-13
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:  148 STQQEEQLLRQGDDAGKGR------KSKLRTVAGYIIVTEFCERLAYYGLSGSLVLLFEKELGMTNAQADTQFALWSGVCYVMPLFGGWIADSYL 414
            S+++ + LL   + A  G       KS + +V  +I+VTEFCER AYYG +GSL + F K LGM++  A    ++++ + Y+MPL G ++AD YL
Sbjct:    4 SSRESDNLLPTAESAKNGTSVAPKYKSVILSVCSFILVTEFCERFAYYGFTGSLPIFFRKNLGMSSVLATELNSVFTCLSYIMPLMGAYVADRYL 98
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BLAST of mRNA_H-canaliculatus_F_contig14522.3504.1 vs. uniprot
Match: A0A6J1KZ11_CUCMA (protein NRT1/ PTR FAMILY 8.1-like n=10 Tax=Cucurbitaceae TaxID=3650 RepID=A0A6J1KZ11_CUCMA)

HSP 1 Score: 75.9 bits (185), Expect = 2.350e-13
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:  232 YIIVTEFCERLAYYGLSGSLVLLFEKELGMTNAQADTQFALWSGVCYVMPLFGGWIADSYL 414
            YI+  EFCERLAYYG+S +LVL F+K L   +A A    A WSG CY+ PL G ++AD+YL
Sbjct:   34 YILGNEFCERLAYYGMSTNLVLYFKKHLNQHSATAVKNVANWSGTCYITPLIGAFLADAYL 94
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14522.3504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3L1_ECTSI7.480e-4360.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9H6_9PHAE3.840e-4162.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TJG8_9STRA1.690e-2265.63Peptide transporter ptr1 n=1 Tax=Nannochloropsis g... [more]
A0A7S3GU63_9STRA6.270e-1958.11Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7R9UH25_9STRA5.700e-1564.71Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1W0A228_9STRA1.070e-1451.43Proton-dependent Oligopeptide Transporter (POT) Fa... [more]
A0A024TRW8_9STRA1.460e-1447.44Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A1D2AG98_AUXPR1.480e-1447.37Uncharacterized protein n=3 Tax=Auxenochlorella pr... [more]
A0A6A4ZKB2_9STRA2.240e-1340.00Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A6J1KZ11_CUCMA2.350e-1355.74protein NRT1/ PTR FAMILY 8.1-like n=10 Tax=Cucurbi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14522contigH-canaliculatus_F_contig14522:170..2514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue1.6e-33
Seed eggNOG ortholog2880.D7G3L1
Preferred nameSLC15A3
KEGG koko:K14638
KEGG TC2.A.17.3
EggNOG free text desc.oligopeptide transport
EggNOG OGsCOG3104@1,KOG1237@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProton-dependent oligopeptide transporter family
Ec32 orthologEc-19_005090.1
Exons2
Model size414
Cds size414
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929203.630292-CDS-H-canaliculatus_F_contig14522:169..4521622929203.630292-CDS-H-canaliculatus_F_contig14522:169..452Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14522 170..452 +
1696845716.4468493-CDS-H-canaliculatus_F_contig14522:169..4521696845716.4468493-CDS-H-canaliculatus_F_contig14522:169..452Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14522 170..452 +
1622929203.648223-CDS-H-canaliculatus_F_contig14522:2383..25141622929203.648223-CDS-H-canaliculatus_F_contig14522:2383..2514Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14522 2384..2514 +
1696845716.4664614-CDS-H-canaliculatus_F_contig14522:2383..25141696845716.4664614-CDS-H-canaliculatus_F_contig14522:2383..2514Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14522 2384..2514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14522.3504.1prot_H-canaliculatus_F_contig14522.3504.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14522 170..2514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14522.3504.1

>prot_H-canaliculatus_F_contig14522.3504.1 ID=prot_H-canaliculatus_F_contig14522.3504.1|Name=mRNA_H-canaliculatus_F_contig14522.3504.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=138bp
MAIARPIDTDYQAMLDDSEHGEGPAAEGRPRMVSLSRRQHPQERHHGEGS
TQQEEQLLRQGDDAGKGRKSKLRTVAGYIIVTEFCERLAYYGLSGSLVLL
FEKELGMTNAQADTQFALWSGVCYVMPLFGGWIADSYL
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mRNA from alignment at H-canaliculatus_F_contig14522:170..2514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14522.3504.1 ID=mRNA_H-canaliculatus_F_contig14522.3504.1|Name=mRNA_H-canaliculatus_F_contig14522.3504.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2345bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14522:170..2514+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGATAGCGAGACCGATTGACACGGACTACCAGGCTATGCTGGATGA
CAGCGAGCATGGCGAGGGTCCGGCGGCAGAAGGTCGCCCAAGGATGGTGT
CTCTGTCGCGGCGACAGCACCCGCAGGAGCGGCATCACGGGGAGGGTTCA
ACACAGCAGGAGGAGCAGCTGCTGCGACAAGGAGATGACGCCGGCAAGGG
GAGGAAATCGAAGCTTCGCACGGTGGCGGGCTACATCATCGTGACCGAGT
TTTGCGAGAGGCTCGCGTACTACGGCCTGTCAGGTGCGGCGAGCGAGACG
AGTGAGGAGGGAAAAGAAGAAGGCGGGGGAGCGAGACGATGATGCAATTT
CTCGTTTCGTCGTGCGTGTTACCGTTGCCCTTGAGCTCGGCGGCACACCT
CGTTGTCGCAAGCGCCGCCCCGTGTCACGGAGTTATTGCCGACCTGTTTG
GCGTGAGTGCTGCCCTGCAGGCTCCGGGCTCGAAGGGAATGATTTACTTT
GCGCGCCGTGAGCACCAGCAAGAAGGAGCACCAGCAGAGTTGGAAGAGGC
GCTCGAACGTGTATATCCAGAAACATACAGCTGTAGTACTCGTAATCTCT
TTACGTCTTGACGTGCGTTTTTTGAACCGTTTCAAAAACCAAAAACACGA
AACGTGTCGTACAGCAGTACGCAGCACCCAGCAGCCGCTTGACGTCTACC
TCCGCATCTGTCTGTCCGGCCCCATCATCGTGTCCGAGGAGCTGCGTCAC
GCGGGGGGCAGAGATAAGATGACAACTAACTCAATTAATCGGACGGCGTC
CGGCGTCGTTTGACTACGATTCCCCTTCAGCCAATGTTATGTCCGAGAAC
GGGTTCAATCAAATGATTCGAAGTGAGGTCGCGCAGTCCAACCATGGATC
ATGATGGATCTCGCTCTCACCCTGCCGGTGGCCGGGTACGCACGGTGACC
CCGTGTCCCGTCGAAACATGCAACCTAGAGACGAATAAGTGCCACTCACC
ATAACAAAAGGTGCACAAAGAGCACTTCAATAGTTGCTTGACTCACCGTA
ATAAAGCCCCCCTGGACCGACTTACAAAGCTCGATTACTCCCGAGGAAGA
ATATTGTCAACGACGCACAGGGTGGCGTTGGAAACATCTCGTCGATGGCC
ATCAGACAACGTGTCGTTTCGCATTGGTATCCTCTTCGCGATGGAGTAAT
CGGCCTTTGAAAGTCGGTCCAGGGGGGATACGATCACCCGCATGATTACG
GTAGTCTCTATCAGGTTGTATCATACGTAGCTTTCTACAAGCACAGCAGC
ACTTCTAGTCGTTGCGCAGAGTACGACGAGTGAGTTTCGGGGTCCGCTTG
TTTTGCTCAGATTCTTAGCTCAAGTTATTAGCTCGGTTCATCGTTGTTTG
AAGTTTGGCGTTGCAGTACACAAGTCCAGAAAACGTGAGATCTTCCGAAG
CGGGGGGAGCGGGGAAGAAGTGGCAGGATAAAAAAAGACGGGCGATTTGG
ACGAGAGAGCAAGCGGGGGATGGTACCATCATAGTAGAGGATGAAAAAAG
CCAAAAAGTCGTGAGCCTCCGAGAATCTGAGCCAAAACATCTGAGACAAC
CTAAGACTGTGAGGACTCCCTCTCTCTTGTTCGCACCCGGAGACTTGTGA
TGCCCCCTCCCCAAGAAACAAAATGGGTATTCCTTCGGTGTTGTTGACTT
GTTTTATAAAATCTGGTGTTGACATTCCTCCTGTGTGGCCCAGGCGAGAA
CACTCATGCACCACAAAGATGTTGGGCAGTCCAGCAAGAATGGGATCGAA
CATGGAAAGAAACACACACAGCGCACAAACTTTGGTCTCGGTTATGCGCG
AGGCATGCCGTGAAGTGAGATTTACGCGCCGGCCTTGATGGACAGGATGG
ACGTGATCAGAGCATTCGCGACGCGGAAACGCGCGCTCGGTGCCCGTGCA
TCCCCTCACCCCCCCCCCCTGATCGTGCCAACCCCCGAACGAGGATATAA
GAGAACAATAGTTTTTCATGGAAAGCGTTTTCCTCCCCCTCCCCCTCCCT
CTCTCTCCCTCTGCCTCTGTCTCTCTGCCTCCCTCTGTTTCTCTTCTCCA
TTTCTCTGTCTGTCTGTCTTTCTCTCTGTTTGTCTGTCTCTCTCTGCCTC
TCTCTGCCTTTCTCTGTCTCTTTCTCTGTCTCCTCTCTCTCTCTGCACCC
CTGCATCCCTGCAGGGTCGCTGGTGCTACTCTTCGAGAAGGAGCTCGGCA
TGACCAATGCACAAGCCGACACACAGTTCGCTCTCTGGTCCGGCGTGTGC
TACGTCATGCCCCTGTTCGGCGGCTGGATCGCCGACAGTTATCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14522:170..2514+

>mRNA_H-canaliculatus_F_contig14522.3504.1 ID=mRNA_H-canaliculatus_F_contig14522.3504.1|Name=mRNA_H-canaliculatus_F_contig14522.3504.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=828bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14522:170..2514+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGATAGCGAGACCGATTGACACGGACTACCAGGCTATGCTGGATGA
CAGCGAGCATGGCGAGGGTCCGGCGGCAGAAGGTCGCCCAAGGATGGTGT
CTCTGTCGCGGCGACAGCACCCGCAGGAGCGGCATCACGGGGAGGGTTCA
ACACAGCAGGAGGAGCAGCTGCTGCGACAAGGAGATGACGCCGGCAAGGG
GAGGAAATCGAAGCTTCGCACGGTGGCGGGCTACATCATCGTGACCGAGT
TTTGCGAGAGGCTCGCGTACTACGGCCTGTCAGATGGCGATAGCGAGACC
GATTGACACGGACTACCAGGCTATGCTGGATGACAGCGAGCATGGCGAGG
GTCCGGCGGCAGAAGGTCGCCCAAGGATGGTGTCTCTGTCGCGGCGACAG
CACCCGCAGGAGCGGCATCACGGGGAGGGTTCAACACAGCAGGAGGAGCA
GCTGCTGCGACAAGGAGATGACGCCGGCAAGGGGAGGAAATCGAAGCTTC
GCACGGTGGCGGGCTACATCATCGTGACCGAGTTTTGCGAGAGGCTCGCG
TACTACGGCCTGTCAGGGTCGCTGGTGCTACTCTTCGAGAAGGAGCTCGG
CATGACCAATGCACAAGCCGACACACAGTTCGCTCTCTGGTCCGGCGTGT
GCTACGTCATGCCCCTGTTCGGCGGCTGGATCGCCGACAGTTATCTCGGT
CGCTGGTGCTACTCTTCGAGAAGGAGCTCGGCATGACCAATGCACAAGCC
GACACACAGTTCGCTCTCTGGTCCGGCGTGTGCTACGTCATGCCCCTGTT
CGGCGGCTGGATCGCCGACAGTTATCTC
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