mRNA_H-canaliculatus_F_contig14502.3495.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14502.3495.1
Unique NamemRNA_H-canaliculatus_F_contig14502.3495.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14502.3495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14502contigH-canaliculatus_F_contig14502:2030..2170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size126
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929203.0181549-CDS-H-canaliculatus_F_contig14502:2029..21551622929203.0181549-CDS-H-canaliculatus_F_contig14502:2029..2155Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14502 2030..2155 -
1696845716.1915905-CDS-H-canaliculatus_F_contig14502:2029..21551696845716.1915905-CDS-H-canaliculatus_F_contig14502:2029..2155Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14502 2030..2155 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929203.0412846-UTR-H-canaliculatus_F_contig14502:2155..21701622929203.0412846-UTR-H-canaliculatus_F_contig14502:2155..2170Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14502 2156..2170 -
1696845716.2030716-UTR-H-canaliculatus_F_contig14502:2155..21701696845716.2030716-UTR-H-canaliculatus_F_contig14502:2155..2170Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14502 2156..2170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14502.3495.1prot_H-canaliculatus_F_contig14502.3495.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14502 2030..2155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14502.3495.1

>prot_H-canaliculatus_F_contig14502.3495.1 ID=prot_H-canaliculatus_F_contig14502.3495.1|Name=mRNA_H-canaliculatus_F_contig14502.3495.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=42bp
MEACGRAGQWNSALRLLAEVRDMGLHPDAFTLNAVMDALGR*
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mRNA from alignment at H-canaliculatus_F_contig14502:2030..2170-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14502.3495.1 ID=mRNA_H-canaliculatus_F_contig14502.3495.1|Name=mRNA_H-canaliculatus_F_contig14502.3495.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=141bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14502:2030..2170- (Hapterophycus canaliculatus Oshoro5f female)
GCCATCCCCTCAGCGATGGAGGCGTGCGGGAGGGCCGGACAGTGGAACAG
CGCCCTCAGGCTCCTCGCCGAGGTGCGAGACATGGGGCTCCACCCCGATG
CTTTCACCCTGAACGCCGTCATGGACGCGCTTGGAAGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14502:2030..2170-

>mRNA_H-canaliculatus_F_contig14502.3495.1 ID=mRNA_H-canaliculatus_F_contig14502.3495.1|Name=mRNA_H-canaliculatus_F_contig14502.3495.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=252bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14502:2030..2170- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGGCGTGCGGGAGGGCCGGACAGTGGAACAGCGCCCTCAGGCTCCT
CGCCGAGGTGCGAGACATGGGGCTCCACCCCGATGCTTTCACCCTGAACG
CCGTCATGGACGCGCTTGGAAGGTGAATGGAGGCGTGCGGGAGGGCCGGA
CAGTGGAACAGCGCCCTCAGGCTCCTCGCCGAGGTGCGAGACATGGGGCT
CCACCCCGATGCTTTCACCCTGAACGCCGTCATGGACGCGCTTGGAAGGT
GA
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