mRNA_H-canaliculatus_F_contig1450.3494.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1450.3494.1
Unique NamemRNA_H-canaliculatus_F_contig1450.3494.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1450.3494.1 vs. uniprot
Match: A0A6H5JLX3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLX3_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 9.540e-50
Identity = 113/296 (38.18%), Postives = 162/296 (54.73%), Query Frame = 1 
Query: 1372 LPVDLVPNTMNPRCKMGGLTITDNRPAPRYDFDMLYADTDE-----LFLHFQGLHKHVIPGVG----VEECVGDMRPHANSFGGPYPCMNGVDLSREELVACLPALTPECTLRLSSLHPPHQRIAVIFRDARNLVVSEHRMRHEGHPQG---IAELEPFILRRFQTIVAWIHQRFVWHT-TALEAISHVIFYEDIQ-----------------------------TNPGRVEDLAAFLGLNCPRKEAESILRMHTYADAPGDYTTYGISMQTLEWMNATMSKTLPEALLLRYGLSP 2133
            L ++L  ++ N  C+MGGL +  + P+P Y+F++L   T E     LFLH++G +KHVIPG+      E C    R H N F    PC++G   +RE+L  CL   +  C   +  +    +R AV+ RD R++V+SE RMR + + Q       ++ FI  RFQTIV+W HQR+VWHT T L   SHV+FY+D+Q                              NP  + DLAAF+GL C   +A ++   H  A   GDYTT+G+ + T+EWMNATM+  LP A+ L +GL+P
Sbjct:    4 LALELCGSSTNTWCEMGGLAVYPSEPSPWYEFELLKRGTGEGSGPTLFLHYKGSNKHVIPGMSWKGHPEGCNQGGRRHRNFFEDYPPCISGPASTREQLTGCLWNTSSRC---MGFVPSESRRTAVMLRDPRDVVLSEFRMRRDYYHQEEVMAISVDDFIWDRFQTIVSWTHQRWVWHTETVLSESSHVMFYDDLQIFSACCCISNLSAPVRGARRLFYTQSSLKANPMGMIDLAAFMGLECSEDQARNVWESHQNAIPHGDYTTHGLQLGTIEWMNATMASLLPTAVSLHWGLTP 296
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1450.3494.1 vs. uniprot
Match: D7FXT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT7_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 3.840e-49
Identity = 107/265 (40.38%), Postives = 154/265 (58.11%), Query Frame = 1 
Query: 1372 LPVDLVPNTMNPRCKMGGLTITDNRPAPRYDFDMLYADTDE--LFLHFQGLHKHVIPGVGVEE---CVGDMRPHANSFGGPYPCMNGVDL-SREELVACLPALTPECTLRLSSLHPPHQRIAVIFRDARNLVVSEH--RMRHEGHPQGIAELEP--FILRRFQTIVAWIHQRFVWHT-TALEAISHVIFYEDIQTNPGRVEDLAAFLGLNCPRKEAESILRMHTYADAPGDYTTYGISMQTLEWMNATMSKTLPEALLLRYGLSP 2133
            L + L  N  N  C MGGL + DN PAP+Y F+M+     E  LFLHF G  KH IPG+  E    C    RPH N FG   PC++  D  +RE L ACL   +  C   + S+ P  +R  VI RD R++ +SE   RM++   P  I +  P  F  +RF+ +V+W HQR++WHT T +   SHV+FYED++ +      +A F+GL C  ++A  + R H      GDY+T+G+  +T++WMN TM++ LP +L LR+G++P
Sbjct:  117 LALHLCGNANNSWCGMGGLVVLDNIPAPKYVFEMVNKTAGEGALFLHFDGNGKHYIPGMKGEPHPGCDNGGRPHENYFGDTPPCLDEEDTPTRERLRACLFNTSALCVQYMPSVDPDVRRSMVIIRDPRDVAMSEREMRMKYYRDPAWIRKATPDVFARKRFEILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLTCSEEDALEVWRAHRNPAPHGDYSTHGLKQETVQWMNETMARLLPPSLALRWGVTP 381
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1450.3494.1 vs. uniprot
Match: A0A6H5L6E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E2_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 8.550e-48
Identity = 105/265 (39.62%), Postives = 154/265 (58.11%), Query Frame = 1 
Query: 1372 LPVDLVPNTMNPRCKMGGLTITDNRPAPRYDFDMLYADTDE--LFLHFQGLHKHVIPGVGVEE---CVGDMRPHANSFGGPYPCMNGVDL-SREELVACLPALTPECTLRLSSLHPPHQRIAVIFRDARNLVVSEHRMR--HEGHPQGIAELEP--FILRRFQTIVAWIHQRFVWHT-TALEAISHVIFYEDIQTNPGRVEDLAAFLGLNCPRKEAESILRMHTYADAPGDYTTYGISMQTLEWMNATMSKTLPEALLLRYGLSP 2133
            L + L  N  N  C MGGL + DN PAP+Y F+M+     E  LFLHF G  KH IPG+  E    C    RPH N FG   PC++  +  +RE L ACL   +  C   ++S+ P  +R  VI RD R++ +SE  MR  +   P  I +  P  F  +RF+ +V+W HQR++WHT T +   SHV+FYED++ +      +A F+GL C  ++A  + R H      GDY+T+G+ ++T++WMN TM++ LP +L  R+G++P
Sbjct:  183 LALHLCGNANNSWCGMGGLAVLDNLPAPKYVFEMVNKTAGEGALFLHFDGNGKHYIPGMKGEPHPGCDNGGRPHENYFGDTPPCLDEEETPTRERLRACLFNTSALCVQYMASVDPDVRRSMVIIRDPRDVAMSEREMRIKYYREPAWIRKTTPDVFARKRFEILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLACSEEDALEVWRAHRNPAPHGDYSTHGLQLETIQWMNETMARLLPPSLAFRWGVTP 447
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1450.3494.1 vs. uniprot
Match: A0A6H5JZR3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR3_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 8.060e-44
Identity = 97/271 (35.79%), Postives = 158/271 (58.30%), Query Frame = 1 
Query: 1360 VFECLPVDLVPNTMNPRCKMGGLTITDNRPAPRYDFDMLYAD-----TDELFLHFQGLHKHVIPGV--GVE-ECVGDMRPHANSFGGPYPCMNGVDLSREELVACLPALTPECTLRLSSLHPPHQRIAVIFRDARNLVVSEHRMRHEGHPQG----IAELEPFILRRFQTIVAWIHQRFVWHT-TALEAISHVIFYEDIQTNPGRVEDLAAFLGLNCPRKEAESILRMHTYADAPGDYTTYGISMQTLEWMNATMSKTLPEALLLRYGLSP 2133
            V   L ++L  +  N  C++GG+TI  + PA  ++F++L  +     + ELFLHF+G+HKH+IPG+  GV   C    R H + F    PC +    +R+ LV+CL   +  C   + S  P  +R  VI RD RN+V+SE+ MR +   +        L+ FI+ +F+ +V+WIHQR++WHT T +   SH+  YE++Q +   + D+A F+GL C  ++A  +     +    G Y + G+S++T+ +MNATM++ LP AL LR+ ++P
Sbjct:   25 VVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKRNIGGSGSPELFLHFKGIHKHIIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTSASCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRTFSLDEFIMWKFEVLVSWIHQRYMWHTGTLMGPSSHITVYEELQRSHLGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPSGGYASRGLSVETVSFMNATMARLLPPALALRWDVTP 295
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1450.3494.1 vs. uniprot
Match: A0A6H5L183_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L183_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 4.780e-42
Identity = 94/266 (35.34%), Postives = 151/266 (56.77%), Query Frame = 1 
Query: 1372 LPVDLVPNTMNPRCKMGGLTITDNRPAPRYDFDMLYADTD----ELFLHFQGLHKHVIPGVGVE---ECVGDMRPHANSFGGPYPCMNGVDLSREELVACLPALTPECTLRLSSLHPPHQRIAVIFRDARNLVVSEHRMR----HEGHPQGIAELEPFILRRFQTIVAWIHQRFVWHTTALEA-ISHVIFYEDIQTNPGRVEDLAAFLGLNCPRKEAESILRMHTYADAPGDYTTYGISMQTLEWMNATMSKTLPEALLLRYGLSP 2133
            L ++L  +  NP C++GG+ +  + PAP Y+F++L   T      LFLHFQG  KH+IPG+ +    +C    R H   F    PC +G   +RE L +CL   T  C   ++S  P  +R  V+FRD R++V+SE++MR    H         LE F+  +F+ +V+W+HQR++WHT  L    SHV FY+++Q +P     +A  +GL C   +A  + + H  A   G + T  +   T+++MNATM++ LP ++ +++GL+P
Sbjct:  133 LAIELCGSENNPWCQLGGVEVFPHPPAPSYEFELLNISTPTGRPRLFLHFQGRIKHIIPGMDLGIPLKCRNGGRLHKEGFMDLQPCDSGESPTRERLESCLWNTTKRCVNYMTSTDPAVRRSIVLFRDPRDVVISEYKMRTQVFHRDPWIASLSLEEFVQFKFEVLVSWLHQRYMWHTGDLMGPSSHVEFYDELQKSPVGFVGIARLMGLECSEDQAYKVWKAHKQASPNGGFATR-LGEATIQFMNATMARLLPPSVAIQWGLTP 397
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1450.3494.1 vs. uniprot
Match: D8LSW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW1_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 2.930e-12
Identity = 46/126 (36.51%), Postives = 69/126 (54.76%), Query Frame = 1 
Query: 1360 VFECLPVDLVPNTMNPRCKMGGLTITDNRPAPRYDFDMLYADTD-----ELFLHFQGLHKHVIPGV--GVE-ECVGDMRPHANSFGGPYPCMNGVDLSREELVACLPALTPECTLRLSSLHPPHQR 1713
            V   L ++L  +  N  C++GG+TI  + PA  ++F++L  + D     ELFLHF+G+HKHVIPG+  GV   C    R H + F    PC +    +R+ LV+CL   +P C   + S  P  +R
Sbjct:   32 VVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKRNIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTSPSCVRHMPSADPAVRR 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1450.3494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JLX3_9PHAE9.540e-5038.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FXT7_ECTSI3.840e-4940.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6E2_9PHAE8.550e-4839.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZR3_9PHAE8.060e-4435.79Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L183_9PHAE4.780e-4235.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LSW1_ECTSI2.930e-1236.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1450contigH-canaliculatus_F_contig1450:3656..8891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size2905
Cds size747
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929202.8718371-UTR-H-canaliculatus_F_contig1450:3655..44151622929202.8718371-UTR-H-canaliculatus_F_contig1450:3655..4415Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1450 3656..4415 -
1696845716.1128867-UTR-H-canaliculatus_F_contig1450:3655..44151696845716.1128867-UTR-H-canaliculatus_F_contig1450:3655..4415Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1450 3656..4415 -
1622929202.9707544-UTR-H-canaliculatus_F_contig1450:7493..88911622929202.9707544-UTR-H-canaliculatus_F_contig1450:7493..8891Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1450 7494..8891 -
1696845716.175388-UTR-H-canaliculatus_F_contig1450:7493..88911696845716.175388-UTR-H-canaliculatus_F_contig1450:7493..8891Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1450 7494..8891 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929202.8876033-CDS-H-canaliculatus_F_contig1450:4415..46401622929202.8876033-CDS-H-canaliculatus_F_contig1450:4415..4640Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1450 4416..4640 -
1696845716.122918-CDS-H-canaliculatus_F_contig1450:4415..46401696845716.122918-CDS-H-canaliculatus_F_contig1450:4415..4640Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1450 4416..4640 -
1622929202.9018855-CDS-H-canaliculatus_F_contig1450:5271..53611622929202.9018855-CDS-H-canaliculatus_F_contig1450:5271..5361Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1450 5272..5361 -
1696845716.1334617-CDS-H-canaliculatus_F_contig1450:5271..53611696845716.1334617-CDS-H-canaliculatus_F_contig1450:5271..5361Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1450 5272..5361 -
1622929202.9155712-CDS-H-canaliculatus_F_contig1450:6353..64711622929202.9155712-CDS-H-canaliculatus_F_contig1450:6353..6471Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1450 6354..6471 -
1696845716.142737-CDS-H-canaliculatus_F_contig1450:6353..64711696845716.142737-CDS-H-canaliculatus_F_contig1450:6353..6471Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1450 6354..6471 -
1622929202.9369974-CDS-H-canaliculatus_F_contig1450:6725..69251622929202.9369974-CDS-H-canaliculatus_F_contig1450:6725..6925Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1450 6726..6925 -
1696845716.1536384-CDS-H-canaliculatus_F_contig1450:6725..69251696845716.1536384-CDS-H-canaliculatus_F_contig1450:6725..6925Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1450 6726..6925 -
1622929202.9568524-CDS-H-canaliculatus_F_contig1450:7379..74931622929202.9568524-CDS-H-canaliculatus_F_contig1450:7379..7493Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1450 7380..7493 -
1696845716.1654398-CDS-H-canaliculatus_F_contig1450:7379..74931696845716.1654398-CDS-H-canaliculatus_F_contig1450:7379..7493Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1450 7380..7493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1450.3494.1prot_H-canaliculatus_F_contig1450.3494.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1450 4416..7493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1450.3494.1

>prot_H-canaliculatus_F_contig1450.3494.1 ID=prot_H-canaliculatus_F_contig1450.3494.1|Name=mRNA_H-canaliculatus_F_contig1450.3494.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=249bp
MNPRCKMGGLTITDNRPAPRYDFDMLYADTDELFLHFQGLHKHVIPGVGV
EECVGDMRPHANSFGGPYPCMNGVDLSREELVACLPALTPECTLRLSSLH
PPHQRIAVIFRDARNLVVSEHRMRHEGHPQGIAELEPFILRRFQTIVAWI
HQRFVWHTTALEAISHVIFYEDIQTNPGRVEDLAAFLGLNCPRKEAESIL
RMHTYADAPGDYTTYGISMQTLEWMNATMSKTLPEALLLRYGLSPIWE*
back to top

mRNA from alignment at H-canaliculatus_F_contig1450:3656..8891-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1450.3494.1 ID=mRNA_H-canaliculatus_F_contig1450.3494.1|Name=mRNA_H-canaliculatus_F_contig1450.3494.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5236bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1450:3656..8891- (Hapterophycus canaliculatus Oshoro5f female)
GCCGTCGGCTGACCCATGTGTACAAAAACGCAATTCACAACCTGAGGCGG
ACGCTTTTAGAATGTCAGGAATCGAAGAATGAAGAGCATCCAGAAATACG
TGCTGTGTGAAATAAACAGATTCCGCGACTGCTCCTTCCCCAAAAAGGGC
TGCACCGATAAAATAGGGGGCGCAACACCGCCGGAATCACAACGATACAT
AACATACACGTCGAGGTTAGGGGTCGGTCTCCACACTCTACCCCGAGCTG
TTGATAGAAGTGGGCGACGAGCTTTGTTGCCGTGCTGCAAGCAGGCACGT
ACACGCAGCACCCATGGGAACACATCATTGGCTTCTCCACTCCTTGCTAG
CATGAGAGACCCCGTCCCGTCCTTGGAGGCTCGGTTTTCGACAACGGGGG
TGCTGCTGTGCGGACATTCCCTAGCATCCACCACCAGCCACCACTGCTGG
CCTCAACCCAGCCAGCAGCAATGCTCAGGAGAGGTAGCTTAATTAAGTCT
GTGATGTCCGTTGTTTCCCTCTCGCGCACCATACTCTCCACGCCATCTGG
GACTCGACGAGAGAGTCTCATACACCGTCTGAGAAATAAGTGGGTTCCAA
AAAAAAATTACTCACTATCTTGAAGACGTCCAAGTACACATTTATTTGCA
GAGCCTTGACGTGTGTGGGACACGTATGTACACGAGAGCCCAAAATATTA
TGCCGTTGGTACACGCATCTCGAGCATGGGATTTCGCGCCTCTCTCTTCC
GCTTGCCGGGGTCCTTACCAAACACAGCAAGTTGTGCCTCCGCACTAGGC
CCCTCTCTTTGTAGTGTTGCTTTTTTCATGTCCATGATACTGTAACACCT
CGTCGAGAAAAAACTCGGATATAACGTGTCTGTAATCACATATTGTGGCA
TTTCCCAAGAAAATCTGGATGAAGGTGGAGTCTAAGATTTATGTATTTGT
AAATTTAACGGCGCGGATATTGATCAAGGCAATAGGGACTGAGAGGACCG
TAAATAATTTAGGCGGATGGATGGACACACGCTGCACGGACCTCCTAGGT
GTTTGCTCTACACAACACTGACCCTCCGATCTTGGATGGAAAGACCCCCT
ACAAGCGTGGCCGACAACCTTTGGAAAGGTTGAAGCAGACTCTTCTTGCT
CGAACCGTTGGACAAATGCGACAGCGTCGATCAGCGCACACACGTACACG
AACATTACTGGCGCAGGTCGGGTTCTCCAGACCGCCTGGACGCAACGCTT
GGTTAAACTAGACAGTGAGTGCAAAGTTTCAGGTTGTGGGAATCCCTACG
TACGAGGGAACGCAGGAAGATCGGGGAGTCACCAAAGTGTCCCTCCAGCG
TCCCCCAACGTGTTCGAGTGTCTGCCTGTGGATCTTGTGCCGAACACCAT
GAATCCTAGGTGCAAGATGGGAGGGCTGACGATCACCGACAACAGACCTG
CCCCTCGGTACGACTTCGACATGCTCTACGCAGACACTGACGAACTTTTC
CTGCACTTCCAGGTAAAGGAAAGTGGTGGAAGCAGAAGAGGTCAAAGCAA
AGAGTGAAATAGGTCCTTAAAAAGCAAGGGGTCATCCTCCAAGAGGTCCC
AGAGAGGGGCCAGTTCGCCGCCTCGTTGATCTCTACAGTAGTTCCTGTCC
CTATCTCTGTGTTTCACGAGAAGCACCAGAGAGAGCCCATACATGATGCT
GCAATTGGATATTTGTGTGCGGAATGCTTTGTCTACAGTAGAACAACGCA
AAGGTAGGTAGGGACGGAGCCTACACAACAACATCCGGTTTTTGTCCCCT
CTCCCCGCGCAAATTGTTTTCGTTTTTCAAAACCAAAACCTTGTCATCGT
GTCGATATGGATGCCTGCCGGGAAAGACCTCCCTGGTGTACACTTAGTCA
GACGAGCGTTGTGAAACTCATATATGAAGGAACCGGCAGATTTAAGCGCG
TTCTACTTCGTTTCAGGGCCTGCACAAACACGTCATTCCCGGCGTGGGCG
TTGAGGAGTGTGTCGGAGACATGCGGCCCCACGCCAACAGCTTCGGAGGA
CCCTACCCTTGCATGAACGGTGTCGACCTGTCAAGAGAGGAGCTGGTGGC
GTGCCTCCCAGCTTTAACGCCAGAGTGCACTCTTCGTCTGTCGAGCTTGC
ACCCTCCTCACCAAAGGTGTGCGCTTTGTGCATGTGTGGCGTCTTGATGA
GGTTTATGTCCGTGGAAGGAAATGATAGGGATTGGTGGAGTTTGTGCACG
TAACCAAGACGAGCGAGTGATTTTCGGTGCTGCGTACGGAAATATATCAC
AACGTAAAGCCTTGCGTAGACATATCAACTGTTTGAATTTTTTTTACACA
TGCATGATGGTCGTCGCTGCGGCGGCATGCGCGTCTCGTACCCGCCTTTT
GCCATGTACGCTTCCTGCAGGATCGCCGTGATATTTCGCGACGCGAGAAA
TCTTGTCGTCAGTGAGCACAGAATGAGGCATGAGGGGCATCCCCAAGGCA
TAGCCGAGCTGGAACCGTTCATCCTCCGTCGTTTCCAGGTAAAAATTGTC
CAACGACGAGGGGGGAGGCGACCAACAGGGCGCAACATAGAACACGGAGA
GTTTCGGCCATGCTGCCGCGTACCTTCCTCCATATTCTTCAAGGCTTACG
GCGGCAACTTTCCCGACGAAGACATTCCGGCCCCCGTATCGGTCAAATTG
CGCTGTTTCCAGCCGAACTTTGCTATTAACTCCTCCACCAAAGACGTTAC
AACCGCCAAAAAGCGACAAACAGCCTATCGCCAAGTTAATAATGCCGCCG
TTTGGCATTACCGCCGTTGCATGTTACCGCCGAAGCACTACCGCCGTCTC
ACGTTACCGCCGCAACACTAGGGTAAGGTACCGCCGTTTTATGCTACTGG
AGAAGTATTAACCACGTCTGTCACAAGTCACAGCTGTCACAGACGCCGGG
TTGCATTTTCTCTGCGTCAGAGTACGCGGGTTCGAGGCCTGTTCTCTCTT
TTTTTTTTCCATCTCTGTTTTCTTGTTGTTCTTTCGTTGGTCTTTTATGT
TTTTCAAGGGTCTGTTGGTTGGGTAGGGTCTACGTCTATCTCCATACTGC
AATACACAGGTATCTACTCTACCCGAGCACTTTTTTAGTAGCTTTTGTAC
AACGGCCCGTACTCTACCTGATCACTTTAATAGTACTTTTTAGGAAGACT
GCTGCGGCGCGCGGGCTCTGCACTGGAGCATGCACAGCAGGAGATCGGTG
GATCCAGTATTGCTTCTGCCTCAACTGCACGAAAAGACACAAAGCAACTG
CTATAACCACGTTCGTTCATCGTGCCTACTGGATGGCCGAGCCGCATTTT
CGTGTGCTTGGGTTGCCCCGATAATCAAGACTACACCACACGCCAAGATT
TCCGTCCACGTTCATTTCTCGCTGCGTGCCAGCGCCTCGTTCATGTCCAT
GCGTTCATGCGTACGACCAGCCCCCCCGGCGCAGACAAAACGATGCCCGA
AACTTTGTGCCCTGCCCCACGGACGAGCAGACCATTGTCGCGTGGATCCA
CCAGCGCTTCGTGTGGCACACTACAGCGTTGGAGGCAATATCGCATGTCA
TATTTTACGAGGACATCCAGGTGTGTGCATGTAGCTATGCTAATGTCGTA
GTGCTTGACGTCTGTTTCTCTGTTCCCGTCGAACATGCACGGAAGAAACC
GACGGGGATAAGGGGGGAACGTTATCACACTGGGATCAACGTGGGCAATC
GGACTTTTTTCGGGACGAGCTAACTCATATCTCGTGTGGAGAGGAAAACA
ATGGATCGTTCATTCCGGCCAGAGTCAGGGCAAGCTGCATGCTACGAGTC
AACCAGCTATCGCCGACCGGGACACTGTGCTAAAGGGCGTGACTTCAAAC
CGAAGGCCACATATTTCGCGCTCCTCGGAAGGACCGTTTTCTACATACCT
TCACTCGCGTGAAGATTCCCCCCCGGAGAGTTTGTTTCTCCCTGCTGTAA
ACTGGGCTTGCATGCGACAACTACGAAATTGACTTCCGCGACAGTTGAGC
ATGCATGTGTTGTTGTTTGAAACACTGAGTAGATCGGGTGAACGCAACTG
GTGCCAATGCCAGCTCCACTTCGCACATATGGAGCAAGGAGGAAAATCGT
TGAGAGTACGTATCAACCCACAGATTGACCTTGTACGATGTCGTTCCTAT
GGACTTGACACCACATCTGTCTGCTGCACTTTCTCTCGTGTTCCTCCTCA
GACAAACCCTGGCCGCGTTGAAGACCTGGCGGCTTTTCTTGGCCTCAACT
GCCCTCGGAAGGAGGCGGAAAGCATTTTGCGGATGCATACGTACGCCGAT
GCCCCCGGAGACTACACGACCTACGGGATTTCTATGCAGACCCTAGAGTG
GATGAACGCCACCATGTCCAAGACGTTACCAGAAGCACTGCTTCTCCGAT
ACGGGCTTTCTCCGATATGGGAGTAGAAGGAACTCAATGCCCTTCTTCGC
TCCTGCTGTGTCATTTGACTCACCTCGTCCCATCCCCATTCCTTCATTGC
TCGTGTTTCCTTGGGTTCGATGGATTCCATTATTTTCTTGGTGATTGCCC
ACGTTGGACGGGGGAGGAGGGGGCACCCTCGAATGTAGACTCAAGGCTTT
TCGGACATGAAAGGTGCGCCAAAGCGTGTCAGGGTTTTGTCGCGGTTCGT
TGCTGGCGGCAGCCGGCGTCCTTTGTGATTCTTCGCTTTATCGAGCTCGA
TATGAGACCGTTGTATTGAACAAGGGGCTGCGCGGTCAGGGCGCTTGGCG
CCCTGCGGCTCCTTTTCATCCTCAACGCGATACAATCGGAAACACATGGA
TACAAGGTGTTCTTAACTTATTCCGCCATGCTCACAAGGATCGTGATCAC
GGTATGTGCATGAAAATGAAGACTGACCGTGCACGCTCACGCGCGCCAAT
ATAATAAATGATTGCGCAGCAGAGAAAACGTGAATACATTTCGTCTGATC
CAGAACGCGCGAAGAGAGTTCACACGGTGCCCAGCAGAGAAAACTCGACA
GATTAGATTCGGAAGAGATTAATGTTTCTTTTAACGCCCACAACACATCA
AAATTTGACAGCCTTGGAACGAACGAGGTATGTTAAACCCCCGCGTGCAC
GTGAGCACTGATTGCACGAACCCGCCCGGAACAACAGCGTCTACCCTTCA
ACAGTGATGAAGGGCTGCGCAAGAGAGAGAGATGGC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1450:3656..8891-

>mRNA_H-canaliculatus_F_contig1450.3494.1 ID=mRNA_H-canaliculatus_F_contig1450.3494.1|Name=mRNA_H-canaliculatus_F_contig1450.3494.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1494bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1450:3656..8891- (Hapterophycus canaliculatus Oshoro5f female)
ATGAATCCTAGGTGCAAGATGGGAGGGCTGACGATCACCGACAACAGACC
TGCCCCTCGGTACGACTTCGACATGCTCTACGCAGACACTGACGAACTTT
TCCTGCACTTCCAGATGAATCCTAGGTGCAAGATGGGAGGGCTGACGATC
ACCGACAACAGACCTGCCCCTCGGTACGACTTCGACATGCTCTACGCAGA
CACTGACGAACTTTTCCTGCACTTCCAGGGCCTGCACAAACACGTCATTC
CCGGCGTGGGCGTTGAGGAGTGTGTCGGAGACATGCGGCCCCACGCCAAC
AGCTTCGGAGGACCCTACCCTTGCATGAACGGTGTCGACCTGTCAAGAGA
GGAGCTGGTGGCGTGCCTCCCAGCTTTAACGCCAGAGTGCACTCTTCGTC
TGTCGAGCTTGCACCCTCCTCACCAAAGGGCCTGCACAAACACGTCATTC
CCGGCGTGGGCGTTGAGGAGTGTGTCGGAGACATGCGGCCCCACGCCAAC
AGCTTCGGAGGACCCTACCCTTGCATGAACGGTGTCGACCTGTCAAGAGA
GGAGCTGGTGGCGTGCCTCCCAGCTTTAACGCCAGAGTGCACTCTTCGTC
TGTCGAGCTTGCACCCTCCTCACCAAAGGATCGCCGTGATATTTCGCGAC
GCGAGAAATCTTGTCGTCAGTGAGCACAGAATGAGGCATGAGGGGCATCC
CCAAGGCATAGCCGAGCTGGAACCGTTCATCCTCCGTCGTTTCCAGGATC
GCCGTGATATTTCGCGACGCGAGAAATCTTGTCGTCAGTGAGCACAGAAT
GAGGCATGAGGGGCATCCCCAAGGCATAGCCGAGCTGGAACCGTTCATCC
TCCGTCGTTTCCAGACCATTGTCGCGTGGATCCACCAGCGCTTCGTGTGG
CACACTACAGCGTTGGAGGCAATATCGCATGTCATATTTTACGAGGACAT
CCAGACCATTGTCGCGTGGATCCACCAGCGCTTCGTGTGGCACACTACAG
CGTTGGAGGCAATATCGCATGTCATATTTTACGAGGACATCCAGACAAAC
CCTGGCCGCGTTGAAGACCTGGCGGCTTTTCTTGGCCTCAACTGCCCTCG
GAAGGAGGCGGAAAGCATTTTGCGGATGCATACGTACGCCGATGCCCCCG
GAGACTACACGACCTACGGGATTTCTATGCAGACCCTAGAGTGGATGAAC
GCCACCATGTCCAAGACGTTACCAGAAGCACTGCTTCTCCGATACGGGCT
TTCTCCGATATGGGAGTAGACAAACCCTGGCCGCGTTGAAGACCTGGCGG
CTTTTCTTGGCCTCAACTGCCCTCGGAAGGAGGCGGAAAGCATTTTGCGG
ATGCATACGTACGCCGATGCCCCCGGAGACTACACGACCTACGGGATTTC
TATGCAGACCCTAGAGTGGATGAACGCCACCATGTCCAAGACGTTACCAG
AAGCACTGCTTCTCCGATACGGGCTTTCTCCGATATGGGAGTAG
back to top