mRNA_H-canaliculatus_F_contig14493.3480.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14493.3480.1
Unique NamemRNA_H-canaliculatus_F_contig14493.3480.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14493.3480.1 vs. uniprot
Match: D7FKN0_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKN0_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 1.920e-52
Identity = 207/523 (39.58%), Postives = 236/523 (45.12%), Query Frame = 1 
Query:    1 DNRQLFADADEPWLPSSSSVLGAPASFDGDGGSNCCHGTRGG-GGGEAG-PGASLSASNSVCCDSHRLFGEALVLYLKSLSMAKEAIIWGNQALEYLPAAVAPTSSASSPPSFCSSRHPQTQSQXXXXXXXXXXXXXXSLTLSPVLPRPFARPVAGSPHGKGRGGGVEGDGATTPLDEISSRGQQXXXXXXXXXXXXXXCGRAGGAAPXXXXXXXXXXXXXSAPLSSEAQVAAWGLSLVRWLTGQFSTVLRRAERCRTELRGEPAT----------------AETSRPSPPSEGGPAAGGAEVDASATEALAAGCVSVRPAMAQPPTLAPAFAGGXXXXXXXXGAALGPAFAAGRSSMLVSTAGRXXXXXXXXXXXXXXX-----------GAVPATVAVSARDIVVRAALATAKESAASEVLGMWEPARQGYEKAALLLETLLLDALISRPETSANGLSRSAXXXXXXXXXXXSTPVSPKAGWVPGAXXXXXXXXXVNPGDSLIASGSRGGVLSDADQRVLQ 1482
            DN  LFAD DEPWLPSSSS              + C G+R G GGG+ G  G+S+S+S++ CCDSHRLFGEALVLYLKSLSMAKEAI+WGNQ                                                                                                                                          VAA    L+ WL+GQFS VLRRAERCRTELRG  +T                A T   S      P  GGA   AS++     G V   PA+   P LA A  G         G A+ P    G + ++ ++  R   XXXXXXXXXXXX           GA PA VAVSARDIVVRAALA AKESAASEVLGMWE AR+GYEKAALLLETLLLDAL++RPET+    SRS                +PK  W  G XXXXX      PGDSLIASG+RGGVL++ADQRVLQ
Sbjct:  749 DNPPLFADMDEPWLPSSSSH-------------SACQGSRSGAGGGDTGFLGSSVSSSSAACCDSHRLFGEALVLYLKSLSMAKEAIVWGNQ------------------------------------------------------------------------------------------------------------------------------------------VAAXXXXLLLWLSGQFSAVLRRAERCRTELRGSASTESPAATAAAATLNSGAATTPAASDTGPALPGRGGASAAASSSPGAPGGVVDPAPAV---PALAAAGGG------YGRGRAVDPDLGLGGAILVSASPERSSAXXXXXXXXXXXXXXXXXXXXHEHGAAPAAVAVSARDIVVRAALAMAKESAASEVLGMWEAARKGYEKAALLLETLLLDALVARPETTGANPSRSTVGGSGQPGPA----AAPKLAWGTGXXXXXXTGA---PGDSLIASGTRGGVLTEADQRVLQ 1104
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14493.3480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKN0_ECTSI1.920e-5239.58Protein kinase domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14493contigH-canaliculatus_F_contig14493:129..2500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.2
Seed ortholog evalue1.8e-38
Seed eggNOG ortholog2880.D7FKN0
KEGG koko:K08269,ko:K21358
KEGG Pathwayko04136,ko04138,ko04139,ko04140,ko04150,ko04212,map04136,map04138,map04139,map04140,map04150,map04212
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0595@1,KOG0595@2759
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-09_000840.1
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03029,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size1770
Cds size1317
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14493.3480.1prot_H-canaliculatus_F_contig14493.3480.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14493 366..2284 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929201.057402-UTR-H-canaliculatus_F_contig14493:128..3651622929201.057402-UTR-H-canaliculatus_F_contig14493:128..365Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14493 129..365 +
1696845715.2170563-UTR-H-canaliculatus_F_contig14493:128..3651696845715.2170563-UTR-H-canaliculatus_F_contig14493:128..365Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14493 129..365 +
1622929201.1509647-UTR-H-canaliculatus_F_contig14493:2284..25001622929201.1509647-UTR-H-canaliculatus_F_contig14493:2284..2500Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14493 2285..2500 +
1696845715.2613664-UTR-H-canaliculatus_F_contig14493:2284..25001696845715.2613664-UTR-H-canaliculatus_F_contig14493:2284..2500Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14493 2285..2500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929201.072133-CDS-H-canaliculatus_F_contig14493:365..13461622929201.072133-CDS-H-canaliculatus_F_contig14493:365..1346Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14493 366..1346 +
1696845715.232886-CDS-H-canaliculatus_F_contig14493:365..13461696845715.232886-CDS-H-canaliculatus_F_contig14493:365..1346Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14493 366..1346 +
1622929201.1353366-CDS-H-canaliculatus_F_contig14493:1948..22841622929201.1353366-CDS-H-canaliculatus_F_contig14493:1948..2284Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14493 1949..2284 +
1696845715.2435577-CDS-H-canaliculatus_F_contig14493:1948..22841696845715.2435577-CDS-H-canaliculatus_F_contig14493:1948..2284Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14493 1949..2284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14493.3480.1

>prot_H-canaliculatus_F_contig14493.3480.1 ID=prot_H-canaliculatus_F_contig14493.3480.1|Name=mRNA_H-canaliculatus_F_contig14493.3480.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=439bp
MAKEAIIWGNQALEYLPAAVAPTSSASSPPSFCSSRHPQTQSQPPPPPPP
PPPSPPPSLTLSPVLPRPFARPVAGSPHGKGRGGGVEGDGATTPLDEISS
RGQQQQQQQQQQQQQRQECGRAGGAAPASGNAPPSSSPSSSAPLSSEAQV
AAWGLSLVRWLTGQFSTVLRRAERCRTELRGEPATAETSRPSPPSEGGPA
AGGAEVDASATEALAAGCVSVRPAMAQPPTLAPAFAGGGGGGGGGLGAAL
GPAFAAGRSSMLVSTAGRGGGPGGGGGGDGRGHGAVPATVAVSARDIVVR
AALATAKESAASEVLGMWEPARQGYEKAALLLETLLLDALISRPETSANG
LSRSAAAATGGGGGSNSTPVSPKAGWVPGAGGGGGGGGGVNPGDSLIASG
SRGGVLSDADQRVLQVRGSPTASGVAVGVCLVLAARLR*
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mRNA from alignment at H-canaliculatus_F_contig14493:129..2500+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14493.3480.1 ID=mRNA_H-canaliculatus_F_contig14493.3480.1|Name=mRNA_H-canaliculatus_F_contig14493.3480.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2372bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14493:129..2500+ (Hapterophycus canaliculatus Oshoro5f female)
GACAACCGCCAGCTTTTTGCCGACGCGGACGAGCCATGGCTCCCGTCGTC
CTCGTCGGTCCTTGGAGCCCCCGCCTCCTTCGACGGCGACGGCGGAAGCA
ACTGCTGCCACGGCACCCGCGGCGGCGGCGGCGGCGAGGCCGGCCCGGGC
GCTAGCTTGTCCGCGTCCAACTCCGTCTGCTGCGACAGCCACCGCCTCTT
CGGTGAAGCCCTGGTCCTGTACCTCAAGAGCCTGTCGATGGCCAAGGAGG
CCATCATCTGGGGCAACCAGGCTCTAGAATATCTCCCCGCCGCCGTTGCG
CCCACTTCTTCGGCCTCGTCGCCGCCCTCTTTCTGCTCGTCGCGCCACCC
TCAGACCCAGAGCCAGCCGCCGCCGCCGCCGCCGCCACCGCCACCGTCGC
CGCCACCGTCGCTGACATTGTCTCCGGTTTTACCGCGGCCCTTCGCCCGG
CCGGTGGCGGGGTCGCCCCACGGAAAGGGGCGGGGGGGGGGCGTGGAAGG
AGACGGCGCGACGACACCCCTCGACGAGATTTCCAGCAGGGGCCAACAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGTCAGGAGTGCGGACGG
GCAGGCGGAGCAGCACCGGCGAGCGGGAACGCTCCTCCCTCTTCCTCGCC
GTCCTCTTCCGCCCCTCTGTCGTCGGAGGCGCAGGTCGCGGCGTGGGGGC
TGTCCCTGGTGAGGTGGCTCACCGGCCAGTTCTCCACGGTGCTCCGGAGA
GCGGAGCGGTGCAGGACGGAGCTGCGCGGCGAGCCCGCGACGGCGGAGAC
GTCGCGGCCTTCCCCTCCGTCGGAGGGGGGCCCGGCCGCGGGGGGCGCCG
AGGTCGACGCCTCCGCGACCGAAGCTCTCGCCGCTGGTTGCGTCTCGGTA
CGGCCCGCCATGGCGCAGCCTCCGACACTCGCTCCCGCGTTTGCCGGCGG
CGGTGGCGGCGGCGGCGGAGGGTTGGGCGCAGCTCTTGGGCCAGCGTTTG
CCGCCGGAAGGTCTTCGATGTTGGTGTCGACGGCTGGTCGCGGCGGCGGC
CCGGGCGGCGGCGGCGGCGGAGACGGGCGTGGGCACGGGGCGGTTCCCGC
GACGGTGGCGGTGTCCGCCCGGGATATCGTGGTGAGGGCGGCGCTCGCCA
CGGCGAAGGAGTCGGCCGCGAGCGAGGTGCTCGGCATGTGGGAGCCCGCT
CGCCAGGGCTACGAAAAGGTGCAGGATGCGGCGATGCGTGTTGTTTGGGG
GCGGTGAATGAGTTGAAGAGGTGCGTGTGCGAGGTTTTGTCCTCCGGCGT
TCTCTCGTAGGGGCGGCGGTGGGCACGGTGTGGGGGGCAGAGGGCACGTT
CCTGAAGGAGATTGTGTTTCGCACCATGGAAGTTTCCACGCTAGCCAGTG
CCTACGGACGGTGAAGTCGCGCTGTGTGGCGTGGCCTCTAGCGCTCTCCA
CAAGGAGCGGACGAGGCGAAAGCGCCGTGGGCTCTCCACGTGTGGGGAAG
GCGTGTCACGCGCCGCTTGGGCGTTTCTCGTGATGCGAGCGTCGTTCGAT
GCGGCCGCCGCTTCTTGTCGCGATTTACGTACGTGCGCGAAACAGGCACT
GCGGTCGCCTCTGACATCCAAAGGTCTCTTCCCACCGCCGCTGTGCCTTG
AAACAGCGTGGGTTCCAGGCGAGTCGTACCGATCTCTCTCTCTCCAAGGC
GTCTCTTGCCGTCCCCAGACACGGCCGGCCTCACGTGCCTGTCCCCATCT
AGTCCCTCCCCCCTTGAGAGTCCTCAGGCGGTTACTCCGTCCCACTCCCC
GCCCCCTGTCGACGCTACAGGCAGCCCTCCTTTTGGAAACCCTTCTCCTC
GACGCCCTGATTTCGCGGCCAGAGACCTCGGCGAACGGCCTCAGCCGAAG
CGCCGCAGCTGCTACCGGTGGTGGAGGCGGCAGCAACTCGACCCCGGTGT
CCCCGAAGGCCGGCTGGGTTCCGGGGGCAGGAGGAGGAGGAGGAGGAGGA
GGAGGTGTCAATCCTGGAGATTCCCTGATTGCGTCCGGGTCGAGAGGTGG
CGTGCTGAGCGATGCGGATCAGCGAGTGCTTCAGGTAAGGGGTTCTCCTA
CAGCATCGGGTGTTGCTGTGGGCGTTTGTCTGGTCTTGGCCGCCCGTCTC
CGATGACCGCGGTCGGGGGAGACGAGTTGGCGTCGGCAGAGCAAGCAAGC
CGGTGATCTGCGCCGCAGCATCTTGATCTGTTCCTGTTGGCAGCGTGCAT
GCCAGACAAACACAAAACAGAAGGTTGTGTGGGCGTGGTTGTTACCCTTG
TAGGATTTGGTGGTTGTACTTGTACCCACTGCAAAATGATGCTTCCGCAG
GCGCGCGGCCTGGAAATGGGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14493:129..2500+

>mRNA_H-canaliculatus_F_contig14493.3480.1 ID=mRNA_H-canaliculatus_F_contig14493.3480.1|Name=mRNA_H-canaliculatus_F_contig14493.3480.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2634bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14493:129..2500+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCAAGGAGGCCATCATCTGGGGCAACCAGGCTCTAGAATATCTCCC
CGCCGCCGTTGCGCCCACTTCTTCGGCCTCGTCGCCGCCCTCTTTCTGCT
CGTCGCGCCACCCTCAGACCCAGAGCCAGCCGCCGCCGCCGCCGCCGCCA
CCGCCACCGTCGCCGCCACCGTCGCTGACATTGTCTCCGGTTTTACCGCG
GCCCTTCGCCCGGCCGGTGGCGGGGTCGCCCCACGGAAAGGGGCGGGGGG
GGGGCGTGGAAGGAGACGGCGCGACGACACCCCTCGACGAGATTTCCAGC
AGGGGCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGTCA
GGAGTGCGGACGGGCAGGCGGAGCAGCACCGGCGAGCGGGAACGCTCCTC
CCTCTTCCTCGCCGTCCTCTTCCGCCCCTCTGTCGTCGGAGGCGCAGGTC
GCGGCGTGGGGGCTGTCCCTGGTGAGGTGGCTCACCGGCCAGTTCTCCAC
GGTGCTCCGGAGAGCGGAGCGGTGCAGGACGGAGCTGCGCGGCGAGCCCG
CGACGGCGGAGACGTCGCGGCCTTCCCCTCCGTCGGAGGGGGGCCCGGCC
GCGGGGGGCGCCGAGGTCGACGCCTCCGCGACCGAAGCTCTCGCCGCTGG
TTGCGTCTCGGTACGGCCCGCCATGGCGCAGCCTCCGACACTCGCTCCCG
CGTTTGCCGGCGGCGGTGGCGGCGGCGGCGGAGGGTTGGGCGCAGCTCTT
GGGCCAGCGTTTGCCGCCGGAAGGTCTTCGATGTTGGTGTCGACGGCTGG
TCGCGGCGGCGGCCCGGGCGGCGGCGGCGGCGGAGACGGGCGTGGGCACG
GGGCGGTTCCCGCGACGGTGGCGGTGTCCGCCCGGGATATCGTGGTGAGG
GCGGCGCTCGCCACGGCGAAGGAGTCGGCCGCGAGCGAGGTGCTCGGCAT
GTGGGAGCCCGCTCGCCAGGGCTACGAAAAGATGGCCAAGGAGGCCATCA
TCTGGGGCAACCAGGCTCTAGAATATCTCCCCGCCGCCGTTGCGCCCACT
TCTTCGGCCTCGTCGCCGCCCTCTTTCTGCTCGTCGCGCCACCCTCAGAC
CCAGAGCCAGCCGCCGCCGCCGCCGCCGCCACCGCCACCGTCGCCGCCAC
CGTCGCTGACATTGTCTCCGGTTTTACCGCGGCCCTTCGCCCGGCCGGTG
GCGGGGTCGCCCCACGGAAAGGGGCGGGGGGGGGGCGTGGAAGGAGACGG
CGCGACGACACCCCTCGACGAGATTTCCAGCAGGGGCCAACAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCGTCAGGAGTGCGGACGGGCAGGC
GGAGCAGCACCGGCGAGCGGGAACGCTCCTCCCTCTTCCTCGCCGTCCTC
TTCCGCCCCTCTGTCGTCGGAGGCGCAGGTCGCGGCGTGGGGGCTGTCCC
TGGTGAGGTGGCTCACCGGCCAGTTCTCCACGGTGCTCCGGAGAGCGGAG
CGGTGCAGGACGGAGCTGCGCGGCGAGCCCGCGACGGCGGAGACGTCGCG
GCCTTCCCCTCCGTCGGAGGGGGGCCCGGCCGCGGGGGGCGCCGAGGTCG
ACGCCTCCGCGACCGAAGCTCTCGCCGCTGGTTGCGTCTCGGTACGGCCC
GCCATGGCGCAGCCTCCGACACTCGCTCCCGCGTTTGCCGGCGGCGGTGG
CGGCGGCGGCGGAGGGTTGGGCGCAGCTCTTGGGCCAGCGTTTGCCGCCG
GAAGGTCTTCGATGTTGGTGTCGACGGCTGGTCGCGGCGGCGGCCCGGGC
GGCGGCGGCGGCGGAGACGGGCGTGGGCACGGGGCGGTTCCCGCGACGGT
GGCGGTGTCCGCCCGGGATATCGTGGTGAGGGCGGCGCTCGCCACGGCGA
AGGAGTCGGCCGCGAGCGAGGTGCTCGGCATGTGGGAGCCCGCTCGCCAG
GGCTACGAAAAGGCAGCCCTCCTTTTGGAAACCCTTCTCCTCGACGCCCT
GATTTCGCGGCCAGAGACCTCGGCGAACGGCCTCAGCCGAAGCGCCGCAG
CTGCTACCGGTGGTGGAGGCGGCAGCAACTCGACCCCGGTGTCCCCGAAG
GCCGGCTGGGTTCCGGGGGCAGGAGGAGGAGGAGGAGGAGGAGGAGGTGT
CAATCCTGGAGATTCCCTGATTGCGTCCGGGTCGAGAGGTGGCGTGCTGA
GCGATGCGGATCAGCGAGTGCTTCAGGTAAGGGGTTCTCCTACAGCATCG
GGTGTTGCTGTGGGCGTTTGTCTGGTCTTGGCCGCCCGTCTCCGATGAGC
AGCCCTCCTTTTGGAAACCCTTCTCCTCGACGCCCTGATTTCGCGGCCAG
AGACCTCGGCGAACGGCCTCAGCCGAAGCGCCGCAGCTGCTACCGGTGGT
GGAGGCGGCAGCAACTCGACCCCGGTGTCCCCGAAGGCCGGCTGGGTTCC
GGGGGCAGGAGGAGGAGGAGGAGGAGGAGGAGGTGTCAATCCTGGAGATT
CCCTGATTGCGTCCGGGTCGAGAGGTGGCGTGCTGAGCGATGCGGATCAG
CGAGTGCTTCAGGTAAGGGGTTCTCCTACAGCATCGGGTGTTGCTGTGGG
CGTTTGTCTGGTCTTGGCCGCCCGTCTCCGATGA
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