mRNA_H-canaliculatus_F_contig1449.3478.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1449.3478.1
Unique NamemRNA_H-canaliculatus_F_contig1449.3478.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1449.3478.1 vs. uniprot
Match: A0A6H5JKV2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKV2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.080e-16
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 3 
Query:    3 RHHFLRELVERKELEIIHVASRYQHADFLTKPLPEREFEFHRNFVMNLR 149
            RHHFLR+LV+ KE+EIIHVAS+YQHADFLTK LPEREF  HR++VMNL+
Sbjct:   83 RHHFLRQLVDEKEVEIIHVASKYQHADFLTKALPEREFVSHRDYVMNLK 131
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BLAST of mRNA_H-canaliculatus_F_contig1449.3478.1 vs. uniprot
Match: A0A6H5KDS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS1_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.490e-15
Identity = 36/48 (75.00%), Postives = 43/48 (89.58%), Query Frame = 3 
Query:    6 HHFLRELVERKELEIIHVASRYQHADFLTKPLPEREFEFHRNFVMNLR 149
            HHFLR+LV+ KE+EI+HVAS+YQHADFLT  LPER F FHR+FVMNL+
Sbjct:   56 HHFLRQLVDEKEVEIVHVASQYQHADFLTNVLPERGFVFHRDFVMNLK 103
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BLAST of mRNA_H-canaliculatus_F_contig1449.3478.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.590e-15
Identity = 39/49 (79.59%), Postives = 46/49 (93.88%), Query Frame = 3 
Query:    3 RHHFLRELVERKELEIIHVASRYQHADFLTKPLPEREFEFHRNFVMNLR 149
            RHHFLR+LV+ KE+EIIHVAS+YQHADFLTK LPEREF FHR++VMNL+
Sbjct:  388 RHHFLRQLVDEKEVEIIHVASQYQHADFLTKALPEREFVFHRDYVMNLK 436
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BLAST of mRNA_H-canaliculatus_F_contig1449.3478.1 vs. uniprot
Match: A0A6H5KIL0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL0_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.450e-15
Identity = 39/49 (79.59%), Postives = 46/49 (93.88%), Query Frame = 3 
Query:    3 RHHFLRELVERKELEIIHVASRYQHADFLTKPLPEREFEFHRNFVMNLR 149
            RHHFLR+LV+ KE+EIIHVAS+YQHADFLTK LPEREF FHR++VMNL+
Sbjct: 1017 RHHFLRQLVDEKEVEIIHVASQYQHADFLTKALPEREFVFHRDYVMNLK 1065
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BLAST of mRNA_H-canaliculatus_F_contig1449.3478.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 5.700e-15
Identity = 38/49 (77.55%), Postives = 46/49 (93.88%), Query Frame = 3 
Query:    3 RHHFLRELVERKELEIIHVASRYQHADFLTKPLPEREFEFHRNFVMNLR 149
            RHHFLR+LV+ KE+EIIHVAS+YQHADFLTK LPER+F FHR++VMNL+
Sbjct:  729 RHHFLRQLVDEKEVEIIHVASQYQHADFLTKALPERDFVFHRDYVMNLK 777
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BLAST of mRNA_H-canaliculatus_F_contig1449.3478.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 5.830e-15
Identity = 38/48 (79.17%), Postives = 45/48 (93.75%), Query Frame = 3 
Query:    3 RHHFLRELVERKELEIIHVASRYQHADFLTKPLPEREFEFHRNFVMNL 146
            RHHFLR+LV+ KE+EIIHVAS+YQHADFLTK LPER+F FHR++VMNL
Sbjct:  336 RHHFLRQLVDEKEVEIIHVASQYQHADFLTKALPERDFVFHRDYVMNL 383
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1449.3478.1 vs. uniprot
Match: A0A6H5KKT4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT4_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.470e-14
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 3 
Query:    3 RHHFLRELVERKELEIIHVASRYQHADFLTKPLPEREFEFHRNFVMNLR 149
            RHHFLR+LV+ KE+EIIHVAS+YQHADFLTK LPEREF  HR++VMNL+
Sbjct:  859 RHHFLRQLVDEKEVEIIHVASKYQHADFLTKALPEREFASHRDYVMNLK 907
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1449.3478.1 vs. uniprot
Match: A0A6H5KFD2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFD2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.470e-14
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 3 
Query:    3 RHHFLRELVERKELEIIHVASRYQHADFLTKPLPEREFEFHRNFVMNLR 149
            RHHFLR+LV+ KE+EIIHVAS+YQHADFLTK LPEREF  HR++VMNL+
Sbjct:  409 RHHFLRQLVDEKEVEIIHVASKYQHADFLTKALPEREFVSHRDYVMNLK 457
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1449.3478.1 vs. uniprot
Match: A0A6H5L1G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G9_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.690e-14
Identity = 37/48 (77.08%), Postives = 45/48 (93.75%), Query Frame = 3 
Query:    6 HHFLRELVERKELEIIHVASRYQHADFLTKPLPEREFEFHRNFVMNLR 149
            HHFLR+LV+ KE+EIIHVAS+YQHADFLTK LPER+F FHR++VMNL+
Sbjct:  494 HHFLRQLVDEKEVEIIHVASQYQHADFLTKALPERDFVFHRDYVMNLK 541
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1449.3478.1 vs. uniprot
Match: A0A6H5KG67_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG67_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.160e-14
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 3 
Query:    3 RHHFLRELVERKELEIIHVASRYQHADFLTKPLPEREFEFHRNFVMNLR 149
            RHHFLR+LV+ KE+EIIHVAS+YQHADFLTK L EREF FHR++VMNL+
Sbjct:  510 RHHFLRQLVDEKEVEIIHVASQYQHADFLTKALHEREFVFHRDYVMNLK 558
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1449.3478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKV2_9PHAE2.080e-1677.55Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDS1_9PHAE1.490e-1575.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRZ9_9PHAE1.590e-1579.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KIL0_9PHAE2.450e-1579.59Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JR13_9PHAE5.700e-1577.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JWK8_9PHAE5.830e-1579.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKT4_9PHAE1.470e-1477.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KFD2_9PHAE1.470e-1477.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L1G9_9PHAE1.690e-1477.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG67_9PHAE3.160e-1477.55Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1449contigH-canaliculatus_F_contig1449:25945..26642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size698
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1449.3478.1prot_H-canaliculatus_F_contig1449.3478.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1449 26128..26487 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929199.5726538-UTR-H-canaliculatus_F_contig1449:25944..261271622929199.5726538-UTR-H-canaliculatus_F_contig1449:25944..26127Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1449 25945..26127 +
1696845714.9257717-UTR-H-canaliculatus_F_contig1449:25944..261271696845714.9257717-UTR-H-canaliculatus_F_contig1449:25944..26127Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1449 25945..26127 +
1622929199.5982695-UTR-H-canaliculatus_F_contig1449:26487..266421622929199.5982695-UTR-H-canaliculatus_F_contig1449:26487..26642Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1449 26488..26642 +
1696845714.9443169-UTR-H-canaliculatus_F_contig1449:26487..266421696845714.9443169-UTR-H-canaliculatus_F_contig1449:26487..26642Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1449 26488..26642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929199.584397-CDS-H-canaliculatus_F_contig1449:26127..264871622929199.584397-CDS-H-canaliculatus_F_contig1449:26127..26487Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1449 26128..26487 +
1696845714.934411-CDS-H-canaliculatus_F_contig1449:26127..264871696845714.934411-CDS-H-canaliculatus_F_contig1449:26127..26487Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1449 26128..26487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1449.3478.1

>prot_H-canaliculatus_F_contig1449.3478.1 ID=prot_H-canaliculatus_F_contig1449.3478.1|Name=mRNA_H-canaliculatus_F_contig1449.3478.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=120bp
MEDEVFASIFGRNHSFHFVISNVFLGLFDAQFVEDDLKLPFYTGDFHCAI
YVRKFLMIAVELAFYHAISRCWIFGEMKNCRFTLATLKKDFNFWIDKTAQ
NYRFTLVISGRFRKQYLNR*
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mRNA from alignment at H-canaliculatus_F_contig1449:25945..26642+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1449.3478.1 ID=mRNA_H-canaliculatus_F_contig1449.3478.1|Name=mRNA_H-canaliculatus_F_contig1449.3478.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=698bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1449:25945..26642+ (Hapterophycus canaliculatus Oshoro5f female)
TGCGGCATCACTTTCTGAGGGAGCTAGTGGAGAGGAAGGAGTTGGAGATC
ATTCACGTAGCTTCGAGGTACCAGCATGCAGATTTTCTCACGAAGCCGTT
GCCGGAGAGAGAGTTTGAATTCCACCGGAATTTTGTGATGAATTTGAGAT
AGTTTTCCGGATGACTAGGATTTTTGTTTTGAGATGGAGGATGAAGTGTT
CGCGAGTATTTTTGGTCGGAATCACAGTTTTCACTTTGTGATTTCGAATG
TTTTTCTGGGACTATTTGATGCGCAGTTTGTGGAGGATGACTTGAAATTG
CCGTTTTACACTGGTGATTTCCACTGCGCGATATATGTTCGTAAGTTTTT
GATGATTGCCGTGGAATTGGCGTTTTACCATGCGATTTCACGATGTTGGA
TATTCGGAGAGATGAAGAATTGCCGTTTTACCCTGGCGACTTTGAAGAAG
GATTTTAATTTTTGGATTGATAAGACCGCGCAGAATTACCGTTTTACCTT
GGTGATTTCTGGGAGGTTTCGAAAACAATACTTAAATCGTTGAAGTTGAT
TTTCTCTGCCCGAAATACTTTCTTGGGTTCCAGGATGAGAGTGTTGTTTT
TTCTGTGTTAAATGAGAGTGATTTTCTTTGTAACAATTTGGCTAGGTCGA
AATCATGACAATGTCGCGAGCAGGGGGGCTGAAAAGTGTACTCACAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1449:25945..26642+

>mRNA_H-canaliculatus_F_contig1449.3478.1 ID=mRNA_H-canaliculatus_F_contig1449.3478.1|Name=mRNA_H-canaliculatus_F_contig1449.3478.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=720bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1449:25945..26642+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGGATGAAGTGTTCGCGAGTATTTTTGGTCGGAATCACAGTTTTCA
CTTTGTGATTTCGAATGTTTTTCTGGGACTATTTGATGCGCAGTTTGTGG
AGGATGACTTGAAATTGCCGTTTTACACTGGTGATTTCCACTGCGCGATA
TATGTTCGTAAGTTTTTGATGATTGCCGTGGAATTGGCGTTTTACCATGC
GATTTCACGATGTTGGATATTCGGAGAGATGAAGAATTGCCGTTTTACCC
TGGCGACTTTGAAGAAGGATTTTAATTTTTGGATTGATAAGACCGCGCAG
AATTACCGTTTTACCTTGGTGATTTCTGGGAGGTTTCGAAAACAATACTT
AAATCGTTGAATGGAGGATGAAGTGTTCGCGAGTATTTTTGGTCGGAATC
ACAGTTTTCACTTTGTGATTTCGAATGTTTTTCTGGGACTATTTGATGCG
CAGTTTGTGGAGGATGACTTGAAATTGCCGTTTTACACTGGTGATTTCCA
CTGCGCGATATATGTTCGTAAGTTTTTGATGATTGCCGTGGAATTGGCGT
TTTACCATGCGATTTCACGATGTTGGATATTCGGAGAGATGAAGAATTGC
CGTTTTACCCTGGCGACTTTGAAGAAGGATTTTAATTTTTGGATTGATAA
GACCGCGCAGAATTACCGTTTTACCTTGGTGATTTCTGGGAGGTTTCGAA
AACAATACTTAAATCGTTGA
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