mRNA_H-canaliculatus_F_contig1448.3472.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1448.3472.1
Unique NamemRNA_H-canaliculatus_F_contig1448.3472.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1448.3472.1 vs. uniprot
Match: D7FS22_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS22_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 9.260e-9
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = -3 
Query:    2 QVWIVYHSKMKTKQVYLHDSTYATPFSLL 88
            QVW+VYHSKMKTKQVYLHDSTYATPFSL+
Sbjct: 1289 QVWVVYHSKMKTKQVYLHDSTYATPFSLM 1317
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1448.3472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS22_ECTSI9.260e-993.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1448contigH-canaliculatus_F_contig1448:26373..26786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size414
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1448.3472.1prot_H-canaliculatus_F_contig1448.3472.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1448 26407..26751 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929199.1777446-UTR-H-canaliculatus_F_contig1448:26372..264061622929199.1777446-UTR-H-canaliculatus_F_contig1448:26372..26406Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1448 26373..26406 +
1696845714.7790437-UTR-H-canaliculatus_F_contig1448:26372..264061696845714.7790437-UTR-H-canaliculatus_F_contig1448:26372..26406Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1448 26373..26406 +
1622929199.224517-UTR-H-canaliculatus_F_contig1448:26751..267861622929199.224517-UTR-H-canaliculatus_F_contig1448:26751..26786Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1448 26752..26786 +
1696845714.7978249-UTR-H-canaliculatus_F_contig1448:26751..267861696845714.7978249-UTR-H-canaliculatus_F_contig1448:26751..26786Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1448 26752..26786 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929199.2113755-CDS-H-canaliculatus_F_contig1448:26406..267511622929199.2113755-CDS-H-canaliculatus_F_contig1448:26406..26751Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1448 26407..26751 +
1696845714.7877755-CDS-H-canaliculatus_F_contig1448:26406..267511696845714.7877755-CDS-H-canaliculatus_F_contig1448:26406..26751Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1448 26407..26751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1448.3472.1

>prot_H-canaliculatus_F_contig1448.3472.1 ID=prot_H-canaliculatus_F_contig1448.3472.1|Name=mRNA_H-canaliculatus_F_contig1448.3472.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=115bp
MEVHLLRLHLAVVDYPHLGGKEEVVRGASRECLEAYGARIDLAVQTTGET
RNTYSNTFRGFMLRDAGRVCFFKGLTTLKEYRLRHTLSQRAFVNSFERGF
STIDNTPVFLLVER*
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mRNA from alignment at H-canaliculatus_F_contig1448:26373..26786+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1448.3472.1 ID=mRNA_H-canaliculatus_F_contig1448.3472.1|Name=mRNA_H-canaliculatus_F_contig1448.3472.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=414bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1448:26373..26786+ (Hapterophycus canaliculatus Oshoro5f female)
GCAGGAGGCTGAACGGCGTGGCGTACGTGGAGTCATGGAGGTACACCTGC
TTCGTCTTCATCTTGCTGTGGTAGACTATCCACACCTGGGGGGAAAGGAA
GAGGTGGTGAGAGGCGCCAGCCGCGAGTGTCTAGAGGCCTACGGAGCCCG
AATCGACCTCGCTGTCCAGACCACAGGAGAAACGCGAAACACGTACTCTA
ATACCTTCAGAGGGTTCATGCTTCGGGATGCGGGTAGAGTTTGTTTTTTT
AAAGGTTTAACAACACTAAAGGAATACCGTCTGCGGCATACACTGTCCCA
GAGGGCTTTTGTCAATTCCTTTGAGAGAGGGTTCAGTACAATTGACAACA
CACCAGTCTTTCTATTAGTTGAAAGGTAGGTTAGACACGCAAAGAACATG
AGTGGGAGGGGCAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1448:26373..26786+

>mRNA_H-canaliculatus_F_contig1448.3472.1 ID=mRNA_H-canaliculatus_F_contig1448.3472.1|Name=mRNA_H-canaliculatus_F_contig1448.3472.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=690bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1448:26373..26786+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGGTACACCTGCTTCGTCTTCATCTTGCTGTGGTAGACTATCCACA
CCTGGGGGGAAAGGAAGAGGTGGTGAGAGGCGCCAGCCGCGAGTGTCTAG
AGGCCTACGGAGCCCGAATCGACCTCGCTGTCCAGACCACAGGAGAAACG
CGAAACACGTACTCTAATACCTTCAGAGGGTTCATGCTTCGGGATGCGGG
TAGAGTTTGTTTTTTTAAAGGTTTAACAACACTAAAGGAATACCGTCTGC
GGCATACACTGTCCCAGAGGGCTTTTGTCAATTCCTTTGAGAGAGGGTTC
AGTACAATTGACAACACACCAGTCTTTCTATTAGTTGAAAGGTAGATGGA
GGTACACCTGCTTCGTCTTCATCTTGCTGTGGTAGACTATCCACACCTGG
GGGGAAAGGAAGAGGTGGTGAGAGGCGCCAGCCGCGAGTGTCTAGAGGCC
TACGGAGCCCGAATCGACCTCGCTGTCCAGACCACAGGAGAAACGCGAAA
CACGTACTCTAATACCTTCAGAGGGTTCATGCTTCGGGATGCGGGTAGAG
TTTGTTTTTTTAAAGGTTTAACAACACTAAAGGAATACCGTCTGCGGCAT
ACACTGTCCCAGAGGGCTTTTGTCAATTCCTTTGAGAGAGGGTTCAGTAC
AATTGACAACACACCAGTCTTTCTATTAGTTGAAAGGTAG
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