mRNA_H-canaliculatus_F_contig14476.3469.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14476.3469.1
Unique NamemRNA_H-canaliculatus_F_contig14476.3469.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14476.3469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14476contigH-canaliculatus_F_contig14476:800..1398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size600
Cds size405
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929199.0727308-UTR-H-canaliculatus_F_contig14476:799..9931622929199.0727308-UTR-H-canaliculatus_F_contig14476:799..993Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14476 800..993 +
1696845714.7586734-UTR-H-canaliculatus_F_contig14476:799..9931696845714.7586734-UTR-H-canaliculatus_F_contig14476:799..993Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14476 800..993 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929199.0875525-CDS-H-canaliculatus_F_contig14476:993..13981622929199.0875525-CDS-H-canaliculatus_F_contig14476:993..1398Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14476 994..1398 +
1696845714.7687926-CDS-H-canaliculatus_F_contig14476:993..13981696845714.7687926-CDS-H-canaliculatus_F_contig14476:993..1398Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14476 994..1398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14476.3469.1prot_H-canaliculatus_F_contig14476.3469.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14476 994..1398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14476.3469.1

>prot_H-canaliculatus_F_contig14476.3469.1 ID=prot_H-canaliculatus_F_contig14476.3469.1|Name=mRNA_H-canaliculatus_F_contig14476.3469.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=135bp
MSTEEKTNAWMKERHAQIGMNAFVVRISSSLRSSPCNDLLMARKCDISKR
KDKKRCIRYRNGMSVTISIFNLRFRSVKKIIIHFQTMYTYMSDQNRKILP
LCQLGIPFLLPIRARRRDKNAFPRSKPGKAQPAEG
back to top

mRNA from alignment at H-canaliculatus_F_contig14476:800..1398+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14476.3469.1 ID=mRNA_H-canaliculatus_F_contig14476.3469.1|Name=mRNA_H-canaliculatus_F_contig14476.3469.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=599bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14476:800..1398+ (Hapterophycus canaliculatus Oshoro5f female)
CTGAGTGCCGGAGTTAAACAGAACTGCGAGGACGGCTCGCGGCAACATTA
GCAGATAGAACGGCGAGGTCGCCCAAGCAAGATGACGAGGAAACTCCCAA
AAAGTGGTGGCATACCTCGCTCTTTACAGCAATAACCTGCGAAGGGTCGC
GTACGTGACGGAGAAGGTGGGGATCTACCGGGCTTTATGGAGGCATGTCG
ACAGAAGAGAAAACCAACGCGTGGATGAAGGAGCGACACGCCCAGATCGG
GATGAATGCCTTCGTAGTTAGAATTTCCTCCTCTTTGCGCAGTAGCCCAT
GCAACGACCTACTCATGGCTAGAAAGTGCGACATTAGCAAGAGAAAAGAC
AAAAAACGCTGCATCAGGTACAGAAATGGTATGAGCGTCACGATTTCAAT
TTTCAATCTGCGATTCCGATCGGTTAAAAAAATAATCATTCATTTCCAAA
CGATGTACACGTACATGTCTGACCAGAATCGAAAGATTCTTCCACTCTGC
CAGCTAGGAATACCTTTTCTCCTTCCCATCCGGGCTCGGCGCCGTGACAA
GAATGCATTCCCAAGATCGAAGCCGGGAAAGGCGCAGCCTGCTGAGGGT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14476:800..1398+

>mRNA_H-canaliculatus_F_contig14476.3469.1 ID=mRNA_H-canaliculatus_F_contig14476.3469.1|Name=mRNA_H-canaliculatus_F_contig14476.3469.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=810bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14476:800..1398+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGACAGAAGAGAAAACCAACGCGTGGATGAAGGAGCGACACGCCCA
GATCGGGATGAATGCCTTCGTAGTTAGAATTTCCTCCTCTTTGCGCAGTA
GCCCATGCAACGACCTACTCATGGCTAGAAAGTGCGACATTAGCAAGAGA
AAAGACAAAAAACGCTGCATCAGGTACAGAAATGGTATGAGCGTCACGAT
TTCAATTTTCAATCTGCGATTCCGATCGGTTAAAAAAATAATCATTCATT
TCCAAACGATGTACACGTACATGTCTGACCAGAATCGAAAGATTCTTCCA
CTCTGCCAGCTAGGAATACCTTTTCTCCTTCCCATCCGGGCTCGGCGCCG
TGACAAGAATGCATTCCCAAGATCGAAGCCGGGAAAGGCGCAGCCTGCTG
AGGGTATGTCGACAGAAGAGAAAACCAACGCGTGGATGAAGGAGCGACAC
GCCCAGATCGGGATGAATGCCTTCGTAGTTAGAATTTCCTCCTCTTTGCG
CAGTAGCCCATGCAACGACCTACTCATGGCTAGAAAGTGCGACATTAGCA
AGAGAAAAGACAAAAAACGCTGCATCAGGTACAGAAATGGTATGAGCGTC
ACGATTTCAATTTTCAATCTGCGATTCCGATCGGTTAAAAAAATAATCAT
TCATTTCCAAACGATGTACACGTACATGTCTGACCAGAATCGAAAGATTC
TTCCACTCTGCCAGCTAGGAATACCTTTTCTCCTTCCCATCCGGGCTCGG
CGCCGTGACAAGAATGCATTCCCAAGATCGAAGCCGGGAAAGGCGCAGCC
TGCTGAGGGT
back to top