mRNA_H-canaliculatus_F_contig14463.3465.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14463.3465.1
Unique NamemRNA_H-canaliculatus_F_contig14463.3465.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14463.3465.1 vs. uniprot
Match: A0A6H5JHX4_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX4_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 5.790e-15
Identity = 41/49 (83.67%), Postives = 42/49 (85.71%), Query Frame = 3 
Query:   21 RLSSADVVLCSLERLAEVPGGASADVRLARSVRWSQVILDVRGVSTPVA 167
            R SS DVVLCSLERLAEV GG SAD RLARSVRWSQV+LDVRGVST  A
Sbjct:  732 RRSSVDVVLCSLERLAEVDGGVSADARLARSVRWSQVVLDVRGVSTAAA 780
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14463.3465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHX4_9PHAE5.790e-1583.67SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14463contigH-canaliculatus_F_contig14463:456..1077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14463.3465.1prot_H-canaliculatus_F_contig14463.3465.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14463 456..1075 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929198.242106-CDS-H-canaliculatus_F_contig14463:455..6351622929198.242106-CDS-H-canaliculatus_F_contig14463:455..635Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14463 456..635 -
1696845714.2919238-CDS-H-canaliculatus_F_contig14463:455..6351696845714.2919238-CDS-H-canaliculatus_F_contig14463:455..635Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14463 456..635 -
1622929198.2570062-CDS-H-canaliculatus_F_contig14463:949..10751622929198.2570062-CDS-H-canaliculatus_F_contig14463:949..1075Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14463 950..1075 -
1696845714.3027456-CDS-H-canaliculatus_F_contig14463:949..10751696845714.3027456-CDS-H-canaliculatus_F_contig14463:949..1075Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14463 950..1075 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929198.270955-UTR-H-canaliculatus_F_contig14463:1075..10771622929198.270955-UTR-H-canaliculatus_F_contig14463:1075..1077Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14463 1076..1077 -
1696845714.3141468-UTR-H-canaliculatus_F_contig14463:1075..10771696845714.3141468-UTR-H-canaliculatus_F_contig14463:1075..1077Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14463 1076..1077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14463.3465.1

>prot_H-canaliculatus_F_contig14463.3465.1 ID=prot_H-canaliculatus_F_contig14463.3465.1|Name=mRNA_H-canaliculatus_F_contig14463.3465.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=102bp
MPSSPTRLSSADVVLCSLERLAEVPGGASADVRLARSVRWSQVILDVRGV
STPVAASAPPAGSGAAAASSGSGGGGSDETGGGGGGGGDCCCPINWPLLS
SV
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mRNA from alignment at H-canaliculatus_F_contig14463:456..1077-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14463.3465.1 ID=mRNA_H-canaliculatus_F_contig14463.3465.1|Name=mRNA_H-canaliculatus_F_contig14463.3465.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=622bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14463:456..1077- (Hapterophycus canaliculatus Oshoro5f female)
CGATGCCGTCTTCGCCCACGAGGCTATCCTCGGCGGATGTCGTGCTCTGC
TCCCTCGAGCGGCTGGCCGAAGTTCCCGGAGGGGCGAGCGCGGACGTTCG
CCTGGCACGCTCGGTCCGATGGAGCCAGGTAGGGATCGCGACATGGGGGT
GGGATGCGGGGTTGTCGGCTGGGGCATCCCTCTGTCGCGAGGAAATGGTT
TCGTTTGTTGGGGCGCGTGCGCGCATGTTGGATGCTGGAGAGGCACTACG
CCGGAACGCGATGCTGCAGAAGCAGCGGAGTCTTTTGGATCAGCATTTCC
GCTTACCTCATCGCGTTCCTGCTGGGGTGGAGCGCCCGCCCCGAGTCCGT
CCAAGCCACGCGCTTGTCCGCAGGGTTTGAATCATGGCTCAACGACGCCT
TCCCTTCCCTATCCATGCCCATGCGACCCCGCCGGCGGCCAGGTGATCCT
GGACGTCCGAGGCGTGTCAACGCCGGTAGCCGCTTCCGCACCACCTGCGG
GCTCTGGAGCAGCAGCGGCGTCAAGCGGCAGCGGTGGCGGCGGTAGCGAC
GAAACCGGCGGCGGCGGCGGCGGCGGTGGCGACTGCTGCTGCCCCATCAA
CTGGCCCCTCCTGTCCTCTGTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14463:456..1077-

>mRNA_H-canaliculatus_F_contig14463.3465.1 ID=mRNA_H-canaliculatus_F_contig14463.3465.1|Name=mRNA_H-canaliculatus_F_contig14463.3465.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=612bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14463:456..1077- (Hapterophycus canaliculatus Oshoro5f female)
ATGCCGTCTTCGCCCACGAGGCTATCCTCGGCGGATGTCGTGCTCTGCTC
CCTCGAGCGGCTGGCCGAAGTTCCCGGAGGGGCGAGCGCGGACGTTCGCC
TGGCACGCTCGGTCCGATGGAGCCAGATGCCGTCTTCGCCCACGAGGCTA
TCCTCGGCGGATGTCGTGCTCTGCTCCCTCGAGCGGCTGGCCGAAGTTCC
CGGAGGGGCGAGCGCGGACGTTCGCCTGGCACGCTCGGTCCGATGGAGCC
AGGTGATCCTGGACGTCCGAGGCGTGTCAACGCCGGTAGCCGCTTCCGCA
CCACCTGCGGGCTCTGGAGCAGCAGCGGCGTCAAGCGGCAGCGGTGGCGG
CGGTAGCGACGAAACCGGCGGCGGCGGCGGCGGCGGTGGCGACTGCTGCT
GCCCCATCAACTGGCCCCTCCTGTCCTCTGTCGTGATCCTGGACGTCCGA
GGCGTGTCAACGCCGGTAGCCGCTTCCGCACCACCTGCGGGCTCTGGAGC
AGCAGCGGCGTCAAGCGGCAGCGGTGGCGGCGGTAGCGACGAAACCGGCG
GCGGCGGCGGCGGCGGTGGCGACTGCTGCTGCCCCATCAACTGGCCCCTC
CTGTCCTCTGTC
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