mRNA_H-canaliculatus_F_contig1446.3463.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1446.3463.1
Unique NamemRNA_H-canaliculatus_F_contig1446.3463.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1446.3463.1 vs. uniprot
Match: D7FQS4_ECTSI (Peroxisomal membrane protein 70 abcd3, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQS4_ECTSI)

HSP 1 Score: 367 bits (942), Expect = 3.580e-117
Identity = 180/200 (90.00%), Postives = 186/200 (93.00%), Query Frame = 1 
Query:    1 QVEAGMNVLVAGPNGSGKSSLFRVLGGLWPLHGGTLLKPPTSRLFYVPQRPYLALGTLRDQVIYPHTRQEAAEKGATDGDLLTVLDAVSLGYLLEREGGWDTVRDWSDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEGAIYSRAARSGITLFTVSHRKSLWKHHSFLLRFDGLGGYEFKPMSDVAGDEQFGS 600
            +VEAGMNVLVAGPNGSGKSSLFRVLGGLWPL GGTL KPPTSRLFYVPQRPYLALGTLRDQVIYPHTRQEAA KG TD DLL+VLD+V LGY+L+REGGWD VRDWSDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEG IY  AA SGITLFTVSHRKSLWKHH +LLRFDGLGGYEFK MSDVAGDE FGS
Sbjct:  517 KVEAGMNVLVAGPNGSGKSSLFRVLGGLWPLRGGTLSKPPTSRLFYVPQRPYLALGTLRDQVIYPHTRQEAASKGVTDVDLLSVLDSVRLGYVLDREGGWDAVRDWSDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEGDIYRLAASSGITLFTVSHRKSLWKHHGYLLRFDGLGGYEFKAMSDVAGDEHFGS 716
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BLAST of mRNA_H-canaliculatus_F_contig1446.3463.1 vs. uniprot
Match: A0A8D8RGN5_9HEMI (ATP-binding cassette sub-family D member 3 n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8RGN5_9HEMI)

HSP 1 Score: 286 bits (732), Expect = 5.270e-91
Identity = 136/200 (68.00%), Postives = 157/200 (78.50%), Query Frame = 1 
Query:    1 QVEAGMNVLVAGPNGSGKSSLFRVLGGLWPLHGGTLLKPPTSRLFYVPQRPYLALGTLRDQVIYPHTRQEAAEKGATDGDLLTVLDAVSLGYLLEREGGWDTVRDWSDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEGAIYSRAARSGITLFTVSHRKSLWKHHSFLLRFDGLGGYEFKPMSDVAGDEQFGS 600
            +V +GMNVLV GPNG GKSSLFR+LG LWPL GG + KPP  +LFYVPQRPY+ LGTLRDQVIYPHT++E   KG TD DL   L+ V L Y+L RE GWDTV DW DVLSGGEKQR+A++RLFYH+PQFAILDECTSAVSVDVEG++Y      GITLFTVSHRKSLW HH + L+ DG G +EFKP+      E+FGS
Sbjct:  102 EVRSGMNVLVCGPNGCGKSSLFRILGELWPLFGGCVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEEMLAKGVTDTDLTDYLNKVQLDYVLNREKGWDTVADWIDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHHEYYLQMDGRGSFEFKPIDITT--EEFGS 299
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BLAST of mRNA_H-canaliculatus_F_contig1446.3463.1 vs. uniprot
Match: A0A2D4CER2_PYTIN (Long chain acyl-CoA transporter ABC transporter n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CER2_PYTIN)

HSP 1 Score: 296 bits (757), Expect = 3.800e-90
Identity = 140/200 (70.00%), Postives = 165/200 (82.50%), Query Frame = 1 
Query:    1 QVEAGMNVLVAGPNGSGKSSLFRVLGGLWPLHGGTLLKPPTSRLFYVPQRPYLALGTLRDQVIYPHTRQEAAEKGATDGDLLTVLDAVSLGYLLEREGGWDTVRDWSDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEGAIYSRAARSGITLFTVSHRKSLWKHHSFLLRFDGLGGYEFKPMSDVAGDEQFGS 600
            +VE+GMNV+VAGPNG GKSSLFR+LG LWPL GGTL KP  + LFY+PQRPYL LG+LRDQ+IYPHT  +  E+G TD +LL +L+ V LGYL+ REGGWD V DW+DVLSGGEKQR+A++RLFYH+PQFAILDECTSAVSVDVEGA+YS      ITLFTVSHRKSLWK+H ++LRFDG G YEFK + +   DE FGS
Sbjct:  477 RVESGMNVVVAGPNGCGKSSLFRILGELWPLFGGTLTKPARNGLFYIPQRPYLTLGSLRDQIIYPHTVADMRERGRTDDELLQLLERVQLGYLVAREGGWDVVHDWADVLSGGEKQRVAMARLFYHKPQFAILDECTSAVSVDVEGAMYSYCREQDITLFTVSHRKSLWKYHEYVLRFDGRGNYEFKKIEEA--DEAFGS 674
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BLAST of mRNA_H-canaliculatus_F_contig1446.3463.1 vs. uniprot
Match: A0A8K0K285_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0K285_LADFU)

HSP 1 Score: 285 bits (728), Expect = 6.330e-90
Identity = 134/189 (70.90%), Postives = 151/189 (79.89%), Query Frame = 1 
Query:    1 QVEAGMNVLVAGPNGSGKSSLFRVLGGLWPLHGGTLLKPPTSRLFYVPQRPYLALGTLRDQVIYPHTRQEAAEKGATDGDLLTVLDAVSLGYLLEREGGWDTVRDWSDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEGAIYSRAARSGITLFTVSHRKSLWKHHSFLLRFDGLGGYEFKPM 567
            +V +GMNVLV GPNG GKSSLFRVLG LWPL GGTL KPP  +LFY+PQRPY+ LGTLRDQVIYPHTR E A +G TD  L   L+ V LGYLL REGGWD V DW DVLSGGEKQR+A++RLFYH PQFAILDECTSAVSVDVEG +Y       ITLFTVSHR+SLWKHH + L+ DG G ++FKP+
Sbjct:  136 EVRSGMNVLVCGPNGCGKSSLFRVLGELWPLFGGTLTKPPRGKLFYIPQRPYMTLGTLRDQVIYPHTRDEMARRGITDETLAEHLERVRLGYLLTREGGWDAVADWIDVLSGGEKQRIAMARLFYHAPQFAILDECTSAVSVDVEGLMYQYCREVDITLFTVSHRRSLWKHHEYYLQMDGRGSFDFKPI 324
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BLAST of mRNA_H-canaliculatus_F_contig1446.3463.1 vs. uniprot
Match: A0A482VPC9_9CUCU (ABC tran and/or AAA 23 domain containing protein n=1 Tax=Asbolus verrucosus TaxID=1661398 RepID=A0A482VPC9_9CUCU)

HSP 1 Score: 282 bits (722), Expect = 1.180e-89
Identity = 135/200 (67.50%), Postives = 156/200 (78.00%), Query Frame = 1 
Query:    1 QVEAGMNVLVAGPNGSGKSSLFRVLGGLWPLHGGTLLKPPTSRLFYVPQRPYLALGTLRDQVIYPHTRQEAAEKGATDGDLLTVLDAVSLGYLLEREGGWDTVRDWSDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEGAIYSRAARSGITLFTVSHRKSLWKHHSFLLRFDGLGGYEFKPMSDVAGDEQFGS 600
            ++++GMNVLV GPNG+GKSSLFRVLG LWPL GG L KPP  +LFY+PQRPY+ LG LRDQ+ YPH+  EA  +G TD  L   L  V LGYLLEREGG D + DW DVLSGGEKQR+A++RLFYH+PQFAILDECTSAVSVDVEG++Y      GITL TVSHRKSLW+HH F+L  DG GGY F P+ DV   EQFGS
Sbjct:   91 EIKSGMNVLVCGPNGAGKSSLFRVLGELWPLFGGELTKPPRGKLFYIPQRPYMTLGCLRDQLTYPHSGSEAIRRGTTDRQLEEHLHRVQLGYLLEREGGLDAIADWLDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGSMYKYCREVGITLLTVSHRKSLWQHHEFVLHLDGRGGYTFHPIEDVT--EQFGS 288
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BLAST of mRNA_H-canaliculatus_F_contig1446.3463.1 vs. uniprot
Match: A0A484E539_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E539_BRELC)

HSP 1 Score: 293 bits (749), Expect = 4.690e-89
Identity = 137/200 (68.50%), Postives = 165/200 (82.50%), Query Frame = 1 
Query:    1 QVEAGMNVLVAGPNGSGKSSLFRVLGGLWPLHGGTLLKPPTSRLFYVPQRPYLALGTLRDQVIYPHTRQEAAEKGATDGDLLTVLDAVSLGYLLEREGGWDTVRDWSDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEGAIYSRAARSGITLFTVSHRKSLWKHHSFLLRFDGLGGYEFKPMSDVAGDEQFGS 600
            +V++GMNV+VAGPNG GKSSLFR+LG LWPL GGTL KP  + LFY+PQRPYL LGTLRDQ++YPH+ ++    G TD DL+  L+ V LG+L+EREGGWD +RDW+DVLSGGEKQR+A++RLFYH+PQFAILDECTSAVSVDVEGA+YS      ITLFTVSHRKSLW HH ++LRFDG G YEFK +++   DE FGS
Sbjct:  468 KVKSGMNVVVAGPNGCGKSSLFRILGELWPLFGGTLTKPERNGLFYIPQRPYLTLGTLRDQIVYPHSLKDMQVSGKTDDDLMVFLEKVQLGHLVEREGGWDIIRDWADVLSGGEKQRVAMARLFYHKPQFAILDECTSAVSVDVEGAMYSYCREQNITLFTVSHRKSLWIHHEYVLRFDGRGHYEFKKINEA--DEAFGS 665
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BLAST of mRNA_H-canaliculatus_F_contig1446.3463.1 vs. uniprot
Match: A0A6G5VBL4_DIACI (ATP-binding cassette transporter n=5 Tax=Psylloidea TaxID=33375 RepID=A0A6G5VBL4_DIACI)

HSP 1 Score: 293 bits (749), Expect = 4.910e-89
Identity = 140/200 (70.00%), Postives = 161/200 (80.50%), Query Frame = 1 
Query:    1 QVEAGMNVLVAGPNGSGKSSLFRVLGGLWPLHGGTLLKPPTSRLFYVPQRPYLALGTLRDQVIYPHTRQEAAEKGATDGDLLTVLDAVSLGYLLEREGGWDTVRDWSDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEGAIYSRAARSGITLFTVSHRKSLWKHHSFLLRFDGLGGYEFKPMSDVAGDEQFGS 600
            +V +GMNVLV GPNG GKSSLFR+LG LWPL GGT+ KPP  +LFYVPQRPY+ LGTLRDQVIYPHT+++  +KG TD DL   L  V LGY+L RE GWDTV DW DVLSGGEKQR+A++RLFYHRPQFAILDECTSAVSVDVEG++Y      GITLFTVSHRKSLW HH F L+ DG G ++FKP+ DV   E+FGS
Sbjct:  470 EVRSGMNVLVCGPNGCGKSSLFRILGELWPLFGGTVTKPPRGKLFYVPQRPYMTLGTLRDQVIYPHTKEDMIQKGITDADLTEYLQKVQLGYILNREKGWDTVADWIDVLSGGEKQRVAMARLFYHRPQFAILDECTSAVSVDVEGSMYEYCREVGITLFTVSHRKSLWTHHEFYLQMDGRGSFDFKPI-DVT-TEEFGS 667
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BLAST of mRNA_H-canaliculatus_F_contig1446.3463.1 vs. uniprot
Match: A0A822GLU9_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822GLU9_9NEOB)

HSP 1 Score: 282 bits (721), Expect = 1.110e-88
Identity = 132/191 (69.11%), Postives = 155/191 (81.15%), Query Frame = 1 
Query:    1 QVEAGMNVLVAGPNGSGKSSLFRVLGGLWPLHGGTLLKPPTSRLFYVPQRPYLALGTLRDQVIYPHTRQEAAEKGATDGDLLTVLDAVSLGYLLEREGGWDTVRDWSDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEGAIYSRAARSGITLFTVSHRKSLWKHHSFLLRFDGLGGYEFKPMSD 573
            +V +G NVLV GPNG GKSSLFRVLG LWPL GG+L KP   +LFYVPQRPY+ LGTLRDQVIYP T+++   +G +D  L   LD V LG +L+REGGWD+V+DW DVLSGGEKQR+A++RLFYH+PQFAILDECTSAVSVDVEG IYS   + GITLFTVSHRKSLWKHH + L  DG G Y+FKP++D
Sbjct:  150 EVRSGTNVLVCGPNGCGKSSLFRVLGELWPLFGGSLTKPDRGKLFYVPQRPYMTLGTLRDQVIYPDTQEDQKRRGISDKVLKEYLDNVQLGQILDREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEGYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHMDGRGNYDFKPITD 340
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BLAST of mRNA_H-canaliculatus_F_contig1446.3463.1 vs. uniprot
Match: A0A6I9YZN1_9SAUR (ATP-binding cassette sub-family D member 3-like n=1 Tax=Thamnophis sirtalis TaxID=35019 RepID=A0A6I9YZN1_9SAUR)

HSP 1 Score: 281 bits (719), Expect = 1.570e-88
Identity = 134/191 (70.16%), Postives = 153/191 (80.10%), Query Frame = 1 
Query:    1 QVEAGMNVLVAGPNGSGKSSLFRVLGGLWPLHGGTLLKPPTSRLFYVPQRPYLALGTLRDQVIYPHTRQEAAEKGATDGDLLTVLDAVSLGYLLEREGGWDTVRDWSDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEGAIYSRAARSGITLFTVSHRKSLWKHHSFLLRFDGLGGYEFKPMSD 573
            QV++G NVL+ GPNG GKSSLFRVLG LWPL GG L KP   +LFYVPQRPY+ LGTLRDQVIYP T ++   KG +D  L   LD V LG +LEREGGWD+V+DW DVLSGGEKQR+A++RLFYH+PQFAILDECTSAVSVDVEG IYS   + GITLFTVSHRKSLWKHH F L  DG G YEFK +++
Sbjct:  139 QVQSGANVLICGPNGCGKSSLFRVLGELWPLFGGCLTKPERGKLFYVPQRPYMTLGTLRDQVIYPDTIEDQKRKGISDQVLKEYLDNVQLGQILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEGYIYSHCRKVGITLFTVSHRKSLWKHHDFYLHMDGRGNYEFKKITE 329
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BLAST of mRNA_H-canaliculatus_F_contig1446.3463.1 vs. uniprot
Match: U6DM48_NEOVI (ATP-binding cassette, sub-family D (ALD), member 3 (Fragment) n=1 Tax=Neovison vison TaxID=452646 RepID=U6DM48_NEOVI)

HSP 1 Score: 279 bits (713), Expect = 1.580e-88
Identity = 132/191 (69.11%), Postives = 153/191 (80.10%), Query Frame = 1 
Query:    1 QVEAGMNVLVAGPNGSGKSSLFRVLGGLWPLHGGTLLKPPTSRLFYVPQRPYLALGTLRDQVIYPHTRQEAAEKGATDGDLLTVLDAVSLGYLLEREGGWDTVRDWSDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEGAIYSRAARSGITLFTVSHRKSLWKHHSFLLRFDGLGGYEFKPMSD 573
            +V +G NVL+ GPNG GKSSLFRVLG LWPL GG L KP   +LFYVPQRPY+ LGTLRDQVIYP  R++   KG +D  L   LD V LG++LEREGGWD+V+DW DVLSGGEKQR+A++RLFYH+PQFAILDECTSAVSVDVEG IYS   + GITLFTVSHRKSLWKHH + L  DG G YEFK +++
Sbjct:   75 EVRSGANVLICGPNGCGKSSLFRVLGELWPLFGGRLTKPERGKLFYVPQRPYMTLGTLRDQVIYPDGREDQRRKGISDLVLKEYLDNVQLGHILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEGYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHMDGRGNYEFKQITE 265
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1446.3463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQS4_ECTSI3.580e-11790.00Peroxisomal membrane protein 70 abcd3, putative n=... [more]
A0A8D8RGN5_9HEMI5.270e-9168.00ATP-binding cassette sub-family D member 3 n=1 Tax... [more]
A0A2D4CER2_PYTIN3.800e-9070.00Long chain acyl-CoA transporter ABC transporter n=... [more]
A0A8K0K285_LADFU6.330e-9070.90Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A482VPC9_9CUCU1.180e-8967.50ABC tran and/or AAA 23 domain containing protein n... [more]
A0A484E539_BRELC4.690e-8968.50Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A6G5VBL4_DIACI4.910e-8970.00ATP-binding cassette transporter n=5 Tax=Psylloide... [more]
A0A822GLU9_9NEOB1.110e-8869.11(mimic poison frog) hypothetical protein n=1 Tax=R... [more]
A0A6I9YZN1_9SAUR1.570e-8870.16ATP-binding cassette sub-family D member 3-like n=... [more]
U6DM48_NEOVI1.580e-8869.11ATP-binding cassette, sub-family D (ALD), member 3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1446contigH-canaliculatus_F_contig1446:23847..26724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score362.5
Seed ortholog evalue1.3e-97
Seed eggNOG ortholog2880.D7FQS4
Preferred nameABCD3
KEGG koko:K05677
KEGG TC3.A.1.203.1
KEGG Pathwayko02010,ko04146,map02010,map04146
GOsGO:0000038,GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005324,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005777,GO:0005778,GO:0005779,GO:0005782,GO:0005829,GO:0005886,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006635,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006996,GO:0007031,GO:0008144,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009062,GO:0009653,GO:0009987,GO:0010033,GO:0010876,GO:0014070,GO:0015399,GO:0015405,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0015910,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016053,GO:0016054,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019395,GO:0019752,GO:0022804,GO:0022857,GO:0030258,GO:0030554,GO:0030587,GO:0031090,GO:0031224,GO:0031231,GO:0031288,GO:0031300,GO:0031301,GO:0031903,GO:0031907,GO:0031974,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032991,GO:0033036,GO:0034440,GO:0035639,GO:0036094,GO:0042221,GO:0042493,GO:0042579,GO:0042623,GO:0042626,GO:0042760,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043190,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043492,GO:0043621,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0046394,GO:0046395,GO:0046942,GO:0046983,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0055114,GO:0070013,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0072329,GO:0072330,GO:0090702,GO:0097159,GO:0097367,GO:0098533,GO:0098588,GO:0098796,GO:0098797,GO:0098805,GO:0099120,GO:1901265,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1902495,GO:1904949,GO:1990351
EggNOG free text desc.ATP-binding cassette sub-family D
EggNOG OGsCOG4178@1,KOG0060@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Exons4
Model size1288
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1446.3463.1prot_H-canaliculatus_F_contig1446.3463.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1446 24532..26709 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929197.9926474-UTR-H-canaliculatus_F_contig1446:23846..245311622929197.9926474-UTR-H-canaliculatus_F_contig1446:23846..24531Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1446 23847..24531 -
1696845714.188564-UTR-H-canaliculatus_F_contig1446:23846..245311696845714.188564-UTR-H-canaliculatus_F_contig1446:23846..24531Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1446 23847..24531 -
1622929198.0752044-UTR-H-canaliculatus_F_contig1446:26709..267241622929198.0752044-UTR-H-canaliculatus_F_contig1446:26709..26724Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1446 26710..26724 -
1696845714.238415-UTR-H-canaliculatus_F_contig1446:26709..267241696845714.238415-UTR-H-canaliculatus_F_contig1446:26709..26724Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1446 26710..26724 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929198.008246-CDS-H-canaliculatus_F_contig1446:24531..246151622929198.008246-CDS-H-canaliculatus_F_contig1446:24531..24615Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1446 24532..24615 -
1696845714.202213-CDS-H-canaliculatus_F_contig1446:24531..246151696845714.202213-CDS-H-canaliculatus_F_contig1446:24531..24615Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1446 24532..24615 -
1622929198.0252895-CDS-H-canaliculatus_F_contig1446:24834..249361622929198.0252895-CDS-H-canaliculatus_F_contig1446:24834..24936Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1446 24835..24936 -
1696845714.210793-CDS-H-canaliculatus_F_contig1446:24834..249361696845714.210793-CDS-H-canaliculatus_F_contig1446:24834..24936Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1446 24835..24936 -
1622929198.046642-CDS-H-canaliculatus_F_contig1446:25540..257471622929198.046642-CDS-H-canaliculatus_F_contig1446:25540..25747Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1446 25541..25747 -
1696845714.2192192-CDS-H-canaliculatus_F_contig1446:25540..257471696845714.2192192-CDS-H-canaliculatus_F_contig1446:25540..25747Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1446 25541..25747 -
1622929198.0607145-CDS-H-canaliculatus_F_contig1446:26514..267091622929198.0607145-CDS-H-canaliculatus_F_contig1446:26514..26709Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1446 26515..26709 -
1696845714.2277017-CDS-H-canaliculatus_F_contig1446:26514..267091696845714.2277017-CDS-H-canaliculatus_F_contig1446:26514..26709Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1446 26515..26709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1446.3463.1

>prot_H-canaliculatus_F_contig1446.3463.1 ID=prot_H-canaliculatus_F_contig1446.3463.1|Name=mRNA_H-canaliculatus_F_contig1446.3463.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=196bp
MNVLVAGPNGSGKSSLFRVLGGLWPLHGGTLLKPPTSRLFYVPQRPYLAL
GTLRDQVIYPHTRQEAAEKGATDGDLLTVLDAVSLGYLLEREGGWDTVRD
WSDVLSGGEKQRLALSRLFYHRPQFAILDECTSAVSVDVEGAIYSRAARS
GITLFTVSHRKSLWKHHSFLLRFDGLGGYEFKPMSDVAGDEQFGS*
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mRNA from alignment at H-canaliculatus_F_contig1446:23847..26724-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1446.3463.1 ID=mRNA_H-canaliculatus_F_contig1446.3463.1|Name=mRNA_H-canaliculatus_F_contig1446.3463.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2878bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1446:23847..26724- (Hapterophycus canaliculatus Oshoro5f female)
CAGGTGGAAGCGGGTATGAACGTGTTGGTAGCGGGGCCCAACGGATCGGG
AAAGTCTAGCCTTTTTCGGGTGCTGGGGGGCCTGTGGCCGCTTCATGGGG
GCACGCTGCTGAAACCGCCCACCTCTCGGCTTTTTTACGTTCCCCAAAGG
CCCTACCTGGCCCTAGGAACGTTGCGGGATCAAGTCATCTACCCGCACAC
GCGGCAGGAGGTGAGTCGGGGTAAGATTCACGGTTGGCGGCGAGGCTGTG
GTCCATTCAATTCAGGCTTTTTATCCGTTGAATTGATTCATTCCAACGGT
CCCCTTGGCGTGTTTGGTGGGCTGCAGATACGGTAGACACCTCAACTACG
ATCACCTTCGCGGTGGCAGATGTCAGGTACCATGCAATGCCTCTTCCATC
CGGCCTGGTGATCATCTTTGCCGGCATGTTTGCATGAACCAAGCGTCAAT
CATGGCGACGTTTGATAAAAACGAAGGACACAACGGCCAGTTTTTCCAGC
ATTTGGGCGGAATTCTGGCTGGCTCTCCGCTAACCTTTTTTGTATGTTGC
TGCTCAAGCATAACATGATACACCGCGAAAGAACTATTTTACGAAGCAAG
AGTACAGCCAGGGGCCGCGTTGAAGCTCTGTTTTCGCGCCCCCAAGACCA
CCGAGTATTTTCCGTGGCTCAGCGAAAACGTCTCCGCGATCAAAAGGATC
ACGAGGCCGTTCCTCCGGGTGGATGGAGCCCGTGCGAAGCGAACCAAACG
CCGCCGAGGGCGGAGCAAACAGGCCGAAGAGAGACGACGAGAAGCACGGC
GCCGCGGATCGCCGCCGCCCCCACCACCCCGCCCCCTCGAAGACATGCGC
GCGCATCCCCCCTCCTCCTCTCAGAAATAACTCTCCCCGCTTTTTTGTGG
CGTCTCTTTCCGAGAACTGAGATGGAACAACGTACTCGGCGTCGACGCTC
GACCCCCTCGTCCTGTCGACACTCCAGGCGGCTGAGAAAGGGGCTACGGA
CGGCGACCTCCTGACGGTGCTCGACGCTGTGAGCCTGGGGTATCTCCTGG
AGAGGGAGGGAGGCTGGGACACGGTTCGGGACTGGAGCGACGTCCTCTCC
GGGGGCGAGAAGCAGCGCCTGGCTCTCAGCAGGCTCTTCTACCACCGCCC
GCAGTTCGCCATTCTGGACGAGTGCACCAGCGCCGTGAGTACTTCACTCG
TTCCTGTCCGAGGGGGTCGGGTTGATGGCCTCCGGCGTGTGTGCGACCGT
GGGCTGGGGTTTGTTGGTTCGAGGTTTGCCGTCTTGTTTTTCCTCGAGCG
CGAGGGCGCGTGCGTGCTTTACCGTCTGCCCTCTTCGCAAGAGCCATGTA
GGCCTGCTCATCCGTGAGGAGAAAAGGGAGCCTATCTCAGGGTTAGAGCA
ATGGCAACGCTTGGAAGACGAGCCGAGGTGGGCCAGAAAGAGGGCGGGGG
GGGCTCAGCGGGATCAAGCAAACGAGTGTATGCAACCCTTTGATTTTGTG
TTACCCGTAGCGAACGTGCGGATCGGCTGACAAATCAAACCACCATCCCT
GAGGATTCCGTAGACGTCGTGGACTTTCATGTTTCAGATATTTTTTTTGA
TCGTTTCTCTCAATGTGGAGTCTACATCCGCTTCGGTCTCTTGCCCCTGT
CTCTTTTTCTCTCTATACCTCTCCGTCTCTCCGTGCATCATTGACATCCC
TCACTCCAACCATTGGTCCACTCGGGCACGTGCTCCCGACGCTGATGCCA
GACGCAACCACAAGTTTGTTTCCGCGCGTTCCCCTCAGGTGAGCGTCGAC
GTGGAGGGCGCGATCTACAGCCGTGCGGCACGCAGTGGGATCACCCTCTT
CACGGTGTCCCACCGCAAGAGCCTATGGAAACATCACAGCGTGAGTATCG
TGCCCTAATGAGGGCCGCCAACTTGGAGTCAGACCTTTCTTATCCTACCC
TGGCTCTTCGCGGGTATGTCTGTGTCCTTTGGTTCCCGCCATCCTTCCCC
ACGTGCCTCCCGCTCTCGCTTGCCCCTCCCCTTAGCACGTGCAACTCCGT
TAGACTCTTCTCTCCGTCACCCCCCCCCCCCTCCCAACGTTATTCTTCAA
TTTTTGCAGTTTCTTCTGCGATTCGACGGGCTGGGAGGGTACGAGTTCAA
GCCCATGTCCGACGTTGCGGGCGACGAACAGTTCGGTTCCTGAGCAAGCC
CCACCGCCATCAGTGGGGGCCGTCTTCCCTTGCGTAGAAGATTAGGTAGA
AAGGCATGTTTTGGGCGTGGAGGGCGTTGGTGTTTGGCAAGGACTTTCGT
CTCAGCGGTGCGGGGAGAGACGAAAGGAGTTAATGTCCGGAAATCTTCTC
AGAAACAGATTTGATCCCGTGTCCGATGGTGGAACTCCAGGCAGGTAACT
TGTAGCCGCGACAAATCGTAGCTCTGGAAGGGGCTAGGGCTAGCGACCTA
ACTGCGTGGACCCCTGGGCAATTACGGAGGGTAGGTGCGCGGGGAGCCTC
TGTGGCAGCATCTCTCCCAACAACAACGTGTGTGCGTAGGGCAAAGGATA
GACGATGTCGGGACTCGGGGGAAATAAAAGCTCTGCCTGTGCTCAACGTC
CCTACGTGAGTTACACACTCACCAAGACGGAGGGCTTCACGCGTGTTGGT
CGATTTCGACTGCCCCGCGTTGCCCGACGGAGCTCTTGCCGCGGTGCAGG
CAGGCACGGTAGGTACGTGTGCGCGTGTGTGTGTGTGTGTTTTGCAATAT
TTCCTCCTCGTCAGCACTAATAGAGTGTAGGCACACGGGCACCTTCACGC
TTGCGACATTTGGCGTGCGCGGATGGGGGTGGCCAAGCTCGTCGACAACC
AAACAAGATTTCAAGATTTGAAGCTCGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1446:23847..26724-

>mRNA_H-canaliculatus_F_contig1446.3463.1 ID=mRNA_H-canaliculatus_F_contig1446.3463.1|Name=mRNA_H-canaliculatus_F_contig1446.3463.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1176bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1446:23847..26724- (Hapterophycus canaliculatus Oshoro5f female)
ATGAACGTGTTGGTAGCGGGGCCCAACGGATCGGGAAAGTCTAGCCTTTT
TCGGGTGCTGGGGGGCCTGTGGCCGCTTCATGGGGGCACGCTGCTGAAAC
CGCCCACCTCTCGGCTTTTTTACGTTCCCCAAAGGCCCTACCTGGCCCTA
GGAACGTTGCGGGATCAAGTCATCTACCCGCACACGCGGCAGGAGATGAA
CGTGTTGGTAGCGGGGCCCAACGGATCGGGAAAGTCTAGCCTTTTTCGGG
TGCTGGGGGGCCTGTGGCCGCTTCATGGGGGCACGCTGCTGAAACCGCCC
ACCTCTCGGCTTTTTTACGTTCCCCAAAGGCCCTACCTGGCCCTAGGAAC
GTTGCGGGATCAAGTCATCTACCCGCACACGCGGCAGGAGGCGGCTGAGA
AAGGGGCTACGGACGGCGACCTCCTGACGGTGCTCGACGCTGTGAGCCTG
GGGTATCTCCTGGAGAGGGAGGGAGGCTGGGACACGGTTCGGGACTGGAG
CGACGTCCTCTCCGGGGGCGAGAAGCAGCGCCTGGCTCTCAGCAGGCTCT
TCTACCACCGCCCGCAGTTCGCCATTCTGGACGAGTGCACCAGCGCCGCG
GCTGAGAAAGGGGCTACGGACGGCGACCTCCTGACGGTGCTCGACGCTGT
GAGCCTGGGGTATCTCCTGGAGAGGGAGGGAGGCTGGGACACGGTTCGGG
ACTGGAGCGACGTCCTCTCCGGGGGCGAGAAGCAGCGCCTGGCTCTCAGC
AGGCTCTTCTACCACCGCCCGCAGTTCGCCATTCTGGACGAGTGCACCAG
CGCCGTGAGCGTCGACGTGGAGGGCGCGATCTACAGCCGTGCGGCACGCA
GTGGGATCACCCTCTTCACGGTGTCCCACCGCAAGAGCCTATGGAAACAT
CACAGCGTGAGCGTCGACGTGGAGGGCGCGATCTACAGCCGTGCGGCACG
CAGTGGGATCACCCTCTTCACGGTGTCCCACCGCAAGAGCCTATGGAAAC
ATCACAGCTTTCTTCTGCGATTCGACGGGCTGGGAGGGTACGAGTTCAAG
CCCATGTCCGACGTTGCGGGCGACGAACAGTTCGGTTCCTGATTTCTTCT
GCGATTCGACGGGCTGGGAGGGTACGAGTTCAAGCCCATGTCCGACGTTG
CGGGCGACGAACAGTTCGGTTCCTGA
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