mRNA_H-canaliculatus_F_contig14444.3458.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14444.3458.1
Unique NamemRNA_H-canaliculatus_F_contig14444.3458.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14444.3458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14444contigH-canaliculatus_F_contig14444:87..1107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1023
Cds size750
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929197.4111917-UTR-H-canaliculatus_F_contig14444:86..3571622929197.4111917-UTR-H-canaliculatus_F_contig14444:86..357Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14444 87..357 +
1696845713.880806-UTR-H-canaliculatus_F_contig14444:86..3571696845713.880806-UTR-H-canaliculatus_F_contig14444:86..357Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14444 87..357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929197.4249058-CDS-H-canaliculatus_F_contig14444:357..11071622929197.4249058-CDS-H-canaliculatus_F_contig14444:357..1107Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14444 358..1107 +
1696845713.8974478-CDS-H-canaliculatus_F_contig14444:357..11071696845713.8974478-CDS-H-canaliculatus_F_contig14444:357..1107Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14444 358..1107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14444.3458.1prot_H-canaliculatus_F_contig14444.3458.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14444 358..1107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14444.3458.1

>prot_H-canaliculatus_F_contig14444.3458.1 ID=prot_H-canaliculatus_F_contig14444.3458.1|Name=mRNA_H-canaliculatus_F_contig14444.3458.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=250bp
MTATLDSVLVVSIGSAPVDEKGDPTRKCGFKAVTLSVPACLFHQRLHNAV
CSANDQAQARCLWSSNPSRTSVEQTMLRSVWVARSRSLEVYSAAFRKNRP
PRHTRRTVRSFAPRRQRAVHGHAKRACVCVCVCVLYWCLSRARAHVDLFG
PHRNRRYLAPPCTQPRAPTKEDDKKNVSLSSPSQGGKKRPRVGRLRPPKP
HPGLGFHRACLTLILIAATDPGAPVHPPARPSPVFPPARHRPRTETTHRP
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mRNA from alignment at H-canaliculatus_F_contig14444:87..1107+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14444.3458.1 ID=mRNA_H-canaliculatus_F_contig14444.3458.1|Name=mRNA_H-canaliculatus_F_contig14444.3458.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1021bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14444:87..1107+ (Hapterophycus canaliculatus Oshoro5f female)
AGAGAACGATTATTAGTTTTATTGTTCCATGCCATTGCACGCATCCACCA
AAAGAGTACCATGCTGATCCTTGAGGAGGCTTTGTGAGCTGGGGAAGGGG
GGGTGCGGAGACTCCGGCCGAGCGACTCCAACTTGTCTCTACATTGTACT
TCGCCGAGAAGGCTACAACAGACACAAGCTACAGGCGTGAGGGGTTCCGA
ACCAAAGGGAGGGGCCCGAGAGACCCGCAAGCACGTGCCTGAAAGGGGTC
TAGGGGTGTGGCTGTGGGGTGATGACGGCAACGCTTGACTCGGTGCTGGT
TGTGTCAATCGGCTCAGCTCCCGTCGACGAAAAGGGGGATCCTACACGAA
AGTGCGGTTTCAAAGCGGTAACTCTGTCTGTGCCGGCTTGCCTTTTCCAT
CAACGGCTACACAACGCCGTATGTAGTGCAAATGACCAAGCACAAGCTCG
CTGTCTCTGGTCTAGCAACCCATCCAGAACGAGCGTCGAGCAAACCATGC
TCCGGAGTGTATGGGTGGCTCGGTCAAGATCACTCGAGGTTTATTCCGCC
GCATTCCGCAAGAATCGTCCTCCTCGACACACACGACGCACCGTTCGCTC
ATTCGCGCCTCGGAGACAGCGAGCTGTTCATGGACATGCCAAAAGGGCAT
GTGTGTGTGTGTGTGTGTGTGTGCTATACTGGTGTTTGTCACGTGCTCGT
GCTCATGTTGACCTGTTTGGTCCGCATCGAAACCGCCGCTACCTGGCACC
ACCGTGTACCCAGCCGCGAGCACCAACCAAAGAAGACGACAAAAAAAATG
TGTCGCTCTCATCGCCTTCTCAGGGGGGGAAAAAACGACCGAGAGTTGGC
CGCCTTCGACCTCCAAAACCTCACCCCGGTTTGGGCTTTCACCGCGCGTG
TCTCACGCTAATCCTCATCGCCGCCACCGACCCCGGCGCCCCCGTCCACC
CACCCGCGCGCCCTAGCCCGGTCTTTCCTCCGGCGCGGCACCGCCCCCGA
ACAGAGACCACGCACCGGCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14444:87..1107+

>mRNA_H-canaliculatus_F_contig14444.3458.1 ID=mRNA_H-canaliculatus_F_contig14444.3458.1|Name=mRNA_H-canaliculatus_F_contig14444.3458.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1500bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14444:87..1107+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACGGCAACGCTTGACTCGGTGCTGGTTGTGTCAATCGGCTCAGCTCC
CGTCGACGAAAAGGGGGATCCTACACGAAAGTGCGGTTTCAAAGCGGTAA
CTCTGTCTGTGCCGGCTTGCCTTTTCCATCAACGGCTACACAACGCCGTA
TGTAGTGCAAATGACCAAGCACAAGCTCGCTGTCTCTGGTCTAGCAACCC
ATCCAGAACGAGCGTCGAGCAAACCATGCTCCGGAGTGTATGGGTGGCTC
GGTCAAGATCACTCGAGGTTTATTCCGCCGCATTCCGCAAGAATCGTCCT
CCTCGACACACACGACGCACCGTTCGCTCATTCGCGCCTCGGAGACAGCG
AGCTGTTCATGGACATGCCAAAAGGGCATGTGTGTGTGTGTGTGTGTGTG
TGCTATACTGGTGTTTGTCACGTGCTCGTGCTCATGTTGACCTGTTTGGT
CCGCATCGAAACCGCCGCTACCTGGCACCACCGTGTACCCAGCCGCGAGC
ACCAACCAAAGAAGACGACAAAAAAAATGTGTCGCTCTCATCGCCTTCTC
AGGGGGGGAAAAAACGACCGAGAGTTGGCCGCCTTCGACCTCCAAAACCT
CACCCCGGTTTGGGCTTTCACCGCGCGTGTCTCACGCTAATCCTCATCGC
CGCCACCGACCCCGGCGCCCCCGTCCACCCACCCGCGCGCCCTAGCCCGG
TCTTTCCTCCGGCGCGGCACCGCCCCCGAACAGAGACCACGCACCGGCCC
ATGACGGCAACGCTTGACTCGGTGCTGGTTGTGTCAATCGGCTCAGCTCC
CGTCGACGAAAAGGGGGATCCTACACGAAAGTGCGGTTTCAAAGCGGTAA
CTCTGTCTGTGCCGGCTTGCCTTTTCCATCAACGGCTACACAACGCCGTA
TGTAGTGCAAATGACCAAGCACAAGCTCGCTGTCTCTGGTCTAGCAACCC
ATCCAGAACGAGCGTCGAGCAAACCATGCTCCGGAGTGTATGGGTGGCTC
GGTCAAGATCACTCGAGGTTTATTCCGCCGCATTCCGCAAGAATCGTCCT
CCTCGACACACACGACGCACCGTTCGCTCATTCGCGCCTCGGAGACAGCG
AGCTGTTCATGGACATGCCAAAAGGGCATGTGTGTGTGTGTGTGTGTGTG
TGCTATACTGGTGTTTGTCACGTGCTCGTGCTCATGTTGACCTGTTTGGT
CCGCATCGAAACCGCCGCTACCTGGCACCACCGTGTACCCAGCCGCGAGC
ACCAACCAAAGAAGACGACAAAAAAAATGTGTCGCTCTCATCGCCTTCTC
AGGGGGGGAAAAAACGACCGAGAGTTGGCCGCCTTCGACCTCCAAAACCT
CACCCCGGTTTGGGCTTTCACCGCGCGTGTCTCACGCTAATCCTCATCGC
CGCCACCGACCCCGGCGCCCCCGTCCACCCACCCGCGCGCCCTAGCCCGG
TCTTTCCTCCGGCGCGGCACCGCCCCCGAACAGAGACCACGCACCGGCCC
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