mRNA_H-canaliculatus_F_contig14417.3448.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14417.3448.1
Unique NamemRNA_H-canaliculatus_F_contig14417.3448.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14417.3448.1 vs. uniprot
Match: D7G5I9_ECTSI (Zeaxanthin epoxidase, chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I9_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 1.410e-40
Identity = 73/93 (78.49%), Postives = 86/93 (92.47%), Query Frame = 1 
Query:  592 PPQMTMAPFKVDAPGGINSVMTSLMKPVLPVIFFMQFMYLYSFHPVALKEGECEELTSKERARAKIQVNECWDAAKEDGTFGRGYERSQKQFS 870
            P ++T++PF +DAPGGINS MTS+MKPVLP+IFF QFMYLYSFHPV+LKEGEC ELT+KERARA+IQV ECW+AAK+DGTF RGYER+QKQFS
Sbjct:  474 PMKVTLSPFNMDAPGGINSFMTSVMKPVLPLIFFAQFMYLYSFHPVSLKEGECAELTNKERARARIQVEECWEAAKKDGTFARGYERAQKQFS 566
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BLAST of mRNA_H-canaliculatus_F_contig14417.3448.1 vs. uniprot
Match: A0A835YX74_9STRA (Zeaxanthin epoxidase chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX74_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.000e-22
Identity = 53/93 (56.99%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:  592 PPQMTMAPFKVDAPGGINSVMTSLMKPVLPVIFFMQFMYLYSFHPVALKEGECEELTSKERARAKIQVNECWDAAKEDGTFGRGYERSQKQFS 870
            P +MTM+PFK+D PGG+ S+MTSLM+PVLP+IF+ QF YLYSF P +L E E   L ++ERARA+      W  AK DGTF +GY R  KQF+
Sbjct:  457 PARMTMSPFKMDMPGGMKSIMTSLMQPVLPLIFWAQFNYLYSFCPTSLTEEERAALVTEERARARKDAELVWAKAKADGTFAKGYNRELKQFT 549
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14417.3448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5I9_ECTSI1.410e-4078.49Zeaxanthin epoxidase, chloroplast n=1 Tax=Ectocarp... [more]
A0A835YX74_9STRA1.000e-2256.99Zeaxanthin epoxidase chloroplast n=1 Tax=Tribonema... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14417contigH-canaliculatus_F_contig14417:948..2602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.8
Seed ortholog evalue7.2e-37
Seed eggNOG ortholog2880.D7G5I9
Preferred nameZEP
KEGG rclassRC01624,RC03037
KEGG koko:K09838
KEGG ReactionR06946,R06947,R10070
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
KEGG ModuleM00372
EggNOG free text desc.FAD binding
EggNOG OGsCOG0654@1,KOG2614@2759
EC1.14.15.21
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size987
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14417.3448.1prot_H-canaliculatus_F_contig14417.3448.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14417 1496..2488 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929195.570126-UTR-H-canaliculatus_F_contig14417:947..13501622929195.570126-UTR-H-canaliculatus_F_contig14417:947..1350Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14417 948..1350 +
1696845712.9107513-UTR-H-canaliculatus_F_contig14417:947..13501696845712.9107513-UTR-H-canaliculatus_F_contig14417:947..1350Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14417 948..1350 +
1622929195.5852942-UTR-H-canaliculatus_F_contig14417:1364..14951622929195.5852942-UTR-H-canaliculatus_F_contig14417:1364..1495Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14417 1365..1495 +
1696845712.9307725-UTR-H-canaliculatus_F_contig14417:1364..14951696845712.9307725-UTR-H-canaliculatus_F_contig14417:1364..1495Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14417 1365..1495 +
1622929195.6430612-UTR-H-canaliculatus_F_contig14417:2488..26021622929195.6430612-UTR-H-canaliculatus_F_contig14417:2488..2602Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14417 2489..2602 +
1696845712.9560602-UTR-H-canaliculatus_F_contig14417:2488..26021696845712.9560602-UTR-H-canaliculatus_F_contig14417:2488..2602Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14417 2489..2602 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929195.6079504-CDS-H-canaliculatus_F_contig14417:1495..16771622929195.6079504-CDS-H-canaliculatus_F_contig14417:1495..1677Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14417 1496..1677 +
1696845712.9397445-CDS-H-canaliculatus_F_contig14417:1495..16771696845712.9397445-CDS-H-canaliculatus_F_contig14417:1495..1677Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14417 1496..1677 +
1622929195.6296835-CDS-H-canaliculatus_F_contig14417:2331..24881622929195.6296835-CDS-H-canaliculatus_F_contig14417:2331..2488Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14417 2332..2488 +
1696845712.9478536-CDS-H-canaliculatus_F_contig14417:2331..24881696845712.9478536-CDS-H-canaliculatus_F_contig14417:2331..2488Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14417 2332..2488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14417.3448.1

>prot_H-canaliculatus_F_contig14417.3448.1 ID=prot_H-canaliculatus_F_contig14417.3448.1|Name=mRNA_H-canaliculatus_F_contig14417.3448.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=113bp
MLLASSFPFVRSISSCLVLPPQMTMAPFKVDAPGGINSVMTSLMKPVLPV
IFFMQFMYLYSFHPVALKEGECEELTSKERARAKIQVNECWDAAKEDGTF
GRGYERSQKQFS*
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mRNA from alignment at H-canaliculatus_F_contig14417:948..2602+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14417.3448.1 ID=mRNA_H-canaliculatus_F_contig14417.3448.1|Name=mRNA_H-canaliculatus_F_contig14417.3448.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1655bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14417:948..2602+ (Hapterophycus canaliculatus Oshoro5f female)
ACCAGATCGGACTACTCGGGATATCAGAACGGCGGTGAAATTGATAGTTT
CGTCGCGCAGATTGCGTCAAAAGCCCTGCGCTACCATCGGGCGACGTCAG
AGGGGTGGCTCACGATCTGTGCGTCGAGCATGGCGATTTTGAGGTCCACG
TGCCGTCACAGAAAAAGACAGGACGGCATAGGAGTATCGGCAGCAGCAGC
AGCAGCAGCCGCTGCAGCTGGAAATTTTTGTCGGCTAGCTTTGCGAAAAG
AGCAACAAAACCACCTAACGATTTCTACAAGTCTCGGGAAATTGACTTGC
CGAAAAGACCCGTGTCGCTTTGTCCGGAGTCTGCTGTGGCCTCTACGCGT
GATGCTACGTCTCTCGCGAACTTGTCGGTTTTGAGCTTTTTTGTGGTGCG
CCTGTGTCGTCGTCGAGGTGGTTGGTCATCCAGGGGTGCAGTGCCCGAGG
TGAACCACCCTGCCTGTCTCGTGCACCTTCGGTCTTGACCCTTCTCCTCT
CCTGCACCGGGGCTCTGGCGTCCGAGACGTGTCGCCCGCTCACGCCTGAT
GTTGTTGGCCTCGTCGTTTCCGTTCGTCCGGTCGATCTCGTCGTGCCTCG
TCTTGCCCCCGCAGATGACCATGGCCCCGTTCAAGGTGGACGCTCCTGGT
GGGATCAATTCCGTCATGACCAGCCTCATGAAGCCGGTGCTGCCGGTCAT
CTTCTTCATGCAGTTCATGTACCTGTACAGGTTCGTTTATTTCTCCCTGC
TTTTTTTTTCGAAGTGTCAAGAACGTCAGAGGAAAACGCTTCGCTGTGTC
AAAATGATCGCGACCCTGGGGATTGGGTTGAATTCCGTGTGTCGAGGGTT
CACCATCGTGGAAAAACATTTTTTGGTGGCAGACGAGACATTTCATGCGC
ATCAAGAGAGGCTCCTTTTTTTTTTTTTTTCAATGAAATCGGTGTCGTGG
TGCTTGCATCGGGCTCGCTTTCTTCCCGCCGCTCGTTCTTCGGGTGTATT
TGATGATCAGGACGTCTGTCCCAAGTTCAACACGGCTTGTCTGTCTCAAA
CAGGGTGACTGCGCCACCGCGCAGCTTGCGCCCGGAGCACACTGCTGTTG
CGCGGCGTTCTACGCCCCGTTTGACCGCGTCACTTGGATCCGCGCTCCGG
CCCTCCGTACATCCCGACCAACGTTTCGCCTCGACTTTCTGGGGAGGCGA
ATTCCTCGTGGCCTCCTCTCATCGCGCCATGGGCCTCGTGCTTTGCTGCC
AGTTGCTCTTTCTGACCGTCGTGTTTGCATACGCAGGCGACGTGCACCGG
TAAATCGTGTTTGGAAAGGCTTTCGTTAACCCCCACCCACCCCCTCGTCT
ACCGACCCCTCCGTCCCTAACTACGGACTCACAGCTTCCACCCAGTGGCG
CTGAAAGAAGGCGAGTGTGAAGAGCTGACCTCCAAGGAGAGGGCTCGAGC
CAAGATCCAGGTGAACGAGTGCTGGGACGCCGCCAAGGAGGACGGCACGT
TCGGCCGCGGCTACGAGCGCAGCCAAAAGCAGTTCTCGTGAGGCCAACAG
AAGCGACAGAGCCATCCGGTTCTTCGACGGCACGGCCTAGAGAGGAACCG
GTTGTCGAGCGGTTTTCTCGCGCGCATCGAAAGGAACCGGGGGTATGTCG
GGAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14417:948..2602+

>mRNA_H-canaliculatus_F_contig14417.3448.1 ID=mRNA_H-canaliculatus_F_contig14417.3448.1|Name=mRNA_H-canaliculatus_F_contig14417.3448.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=678bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14417:948..2602+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTGTTGGCCTCGTCGTTTCCGTTCGTCCGGTCGATCTCGTCGTGCCT
CGTCTTGCCCCCGCAGATGACCATGGCCCCGTTCAAGGTGGACGCTCCTG
GTGGGATCAATTCCGTCATGACCAGCCTCATGAAGCCGGTGCTGCCGGTC
ATCTTCTTCATGCAGTTCATGTACCTGTACAGATGTTGTTGGCCTCGTCG
TTTCCGTTCGTCCGGTCGATCTCGTCGTGCCTCGTCTTGCCCCCGCAGAT
GACCATGGCCCCGTTCAAGGTGGACGCTCCTGGTGGGATCAATTCCGTCA
TGACCAGCCTCATGAAGCCGGTGCTGCCGGTCATCTTCTTCATGCAGTTC
ATGTACCTGTACAGCTTCCACCCAGTGGCGCTGAAAGAAGGCGAGTGTGA
AGAGCTGACCTCCAAGGAGAGGGCTCGAGCCAAGATCCAGGTGAACGAGT
GCTGGGACGCCGCCAAGGAGGACGGCACGTTCGGCCGCGGCTACGAGCGC
AGCCAAAAGCAGTTCTCGTGACTTCCACCCAGTGGCGCTGAAAGAAGGCG
AGTGTGAAGAGCTGACCTCCAAGGAGAGGGCTCGAGCCAAGATCCAGGTG
AACGAGTGCTGGGACGCCGCCAAGGAGGACGGCACGTTCGGCCGCGGCTA
CGAGCGCAGCCAAAAGCAGTTCTCGTGA
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