mRNA_H-canaliculatus_F_contig144.3441.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig144.3441.1
Unique NamemRNA_H-canaliculatus_F_contig144.3441.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig144.3441.1 vs. uniprot
Match: A0A835YZX1_9STRA (Flagellar C1a complex subunit C1a-32-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZX1_9STRA)

HSP 1 Score: 131 bits (329), Expect = 4.330e-37
Identity = 57/100 (57.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:    1 VVLDFHYYNYAFCKERRFDARATSTFLSIMKDILDEDMRTNDLASSLRASFARFEELILRHAVDRPPWTTGVLNPKDVGAITDYVATSYYRHFTLYKHIF 300
            V++DFH YNYAFCKE+RFD + TST++SIM D+L +D+  +D  S  +ASF RF +LILRH V+RPPW+ G+   +DV  IT+YV  SYYRH+ +YKH+F
Sbjct:   19 VLVDFHLYNYAFCKEQRFDTQKTSTYMSIMTDVLKQDLSQDDPVSGQQASFDRFRDLILRHCVERPPWSVGIFTLEDVAGITEYVVNSYYRHYRIYKHLF 118          
BLAST of mRNA_H-canaliculatus_F_contig144.3441.1 vs. uniprot
Match: A0A6V1RZL7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RZL7_HETAK)

HSP 1 Score: 112 bits (280), Expect = 3.990e-29
Identity = 46/100 (46.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:    1 VVLDFHYYNYAFCKERRFDARATSTFLSIMKDILDEDMRTNDLASSLRASFARFEELILRHAVDRPPWTTGVLNPKDVGAITDYVATSYYRHFTLYKHIF 300
            ++LDFH+YNYAFCK+  F     STFLSIMKD +D+D   +D  ++++ASF + ++ +L H ++RPPW+ G+  P+D+  ++D+V   YYR F LYK++F
Sbjct:   49 ILLDFHFYNYAFCKKLGFGPTKISTFLSIMKDTIDKDFSQHDAVNTIKASFEQLKKTLLMHCIERPPWSVGIFQPEDLQLLSDFVLNGYYRQFRLYKYLF 148          
BLAST of mRNA_H-canaliculatus_F_contig144.3441.1 vs. uniprot
Match: T0R735_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R735_SAPDV)

HSP 1 Score: 89.7 bits (221), Expect = 3.690e-20
Identity = 47/108 (43.52%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    1 VVLDFHYYNYAFCKERRFDARATSTFLSIMKDIL--------DEDMRTNDLASSLRASFARFEELILRHAVDRPPWTTGVLNPKDVGAITDYVATSYYRHFTLYKHIF 300
            +V+D + Y YAF K+  F A  TST L+I+  ++        ++D+RT     +L ASF+RF+ ++LRH+V+RPP +TG+ +  DV  I DYV  +YYRHF LY+ IF
Sbjct:   53 LVVDMYMYLYAFTKQHEFSAERTSTVLAIVHSLVLTDLFLHGEKDLRT---LPTLPASFSRFQAMLLRHSVERPPMSTGIFDAADVSRIVDYVTHTYYRHFHLYQSIF 157          
BLAST of mRNA_H-canaliculatus_F_contig144.3441.1 vs. uniprot
Match: A0A067CXF4_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CXF4_SAPPC)

HSP 1 Score: 85.9 bits (211), Expect = 5.540e-19
Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 1
Query:    1 VVLDFHYYNYAFCKERRFDARATSTFLSIMKDILDEDMRTN---DLAS--SLRASFARFEELILRHAVDRPPWTTGVLNPKDVGAITDYVATSYYRHFTLYKHIF 300
            +V+D + Y YAF K+  F A  TST L+I+  ++  D+  +   DL +  +L  SF RF+ ++LRH+V+RPP +TG+ +  DV  I DYV  +YYRHF LY+ IF
Sbjct:   53 LVVDMYMYLYAFTKQHEFSAERTSTVLAIVHSLVLTDLFLHGEKDLRALPTLPGSFGRFQAMLLRHSVERPPMSTGIFDATDVTRIVDYVTHTYYRHFHLYQSIF 157          
BLAST of mRNA_H-canaliculatus_F_contig144.3441.1 vs. uniprot
Match: A0A7S1Q3Y6_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1Q3Y6_ALECA)

HSP 1 Score: 87.8 bits (216), Expect = 1.050e-18
Identity = 44/104 (42.31%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 VVLDFHYYNYAFCKERRFDARATSTFLSIMKDILDEDMRTNDLASSLRASFAR----FEELILRHAVDRPPWTTGVLNPKDVGAITDYVATSYYRHFTLYKHIF 300
            ++ D HY+NY+FC  + F A  TSTFLSIMK +L+E       A S R + A     F++ +L+H+V+RPPW+ GV    DV A+ DYV  +++RH+ LY +++
Sbjct:   99 ILADMHYHNYSFCTAQGFTAMKTSTFLSIMKLVLEE-------AISCRLTAAEACDVFKDWLLKHSVERPPWSVGVFTYDDVKAVMDYVHNTFFRHYRLYMYVY 195          
BLAST of mRNA_H-canaliculatus_F_contig144.3441.1 vs. uniprot
Match: A0A0G4GFV0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GFV0_VITBC)

HSP 1 Score: 83.6 bits (205), Expect = 3.210e-17
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:    1 VVLDFHYYNYAFCKERRFDARATSTFLSIMKDILDEDMRTNDLASSLRASFARFEELILRHAVDRPPWTTGVLNPKDVGAITDYVATSYYRHFTLYKHIF 300
            ++ DFH  NY FC E  F  R  S   S+M  +  + +RT      + A+F  F+ L+LRH+V RPPW+ GV + +DV  +T+YV  +++RHF LY++++
Sbjct:   59 ILSDFHLNNYLFCLESGFSDRKQSALCSLMAHLFRQTVRTR---LDIHAAFDLFKALLLRHSVQRPPWSVGVFSTQDVKDVTNYVLDTFFRHFKLYQYVY 155          
BLAST of mRNA_H-canaliculatus_F_contig144.3441.1 vs. uniprot
Match: A0A2G8KUF3_STIJA (Putative coiled-coil domain-containing protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KUF3_STIJA)

HSP 1 Score: 79.0 bits (193), Expect = 3.800e-15
Identity = 40/100 (40.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:    1 VVLDFHYYNYAFCKERRFDARATSTFLSIMKDILDEDMRTNDLASSLRASFARFEELILRHAVDRPPWTTGVLNPKDVGAITDYVATSYYRHFTLYKHIF 300
            V+LD +Y+   +  ++ F+   TSTF SI+K   +  + T     +L   F  F+EL+L HAV RPPW+  + +P+ VG IT+YV  +Y+RH+ LYK+ F
Sbjct:  116 VLLDLYYFTIQYAIDKGFNKEQTSTFFSIVKKTHEVCIETP--FGNLDQCFNYFKELVLCHAVKRPPWSIHLFSPEQVGMITEYVVNTYFRHYKLYKYAF 213          
BLAST of mRNA_H-canaliculatus_F_contig144.3441.1 vs. uniprot
Match: A0A8B7Y3C2_ACAPL (coiled-coil domain-containing protein 189-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y3C2_ACAPL)

HSP 1 Score: 77.0 bits (188), Expect = 9.050e-15
Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = 1
Query:    1 VVLDFHYYNYAFCKERRFDARATSTFLSIMKDILDEDMRTNDLAS-----SLRASFARFEELILRHAVDRPPWTTGVLNPKDVGAITDYVATSYYRHFTLYKHIF 300
            V+LD +YY   F  +  F+    S F SI+K       +T+++ S     +L  ++  F+EL+L HAV RPPW+  + +P  V  ITDYV  +Y+RH+ LYK++F
Sbjct:   68 VLLDLYYYTIQFALDHGFNKEQLSAFFSIVK-------KTHEVCSETPFGNLEQTYNYFKELVLCHAVKRPPWSINLFSPDQVHQITDYVLNTYFRHYKLYKYVF 165          
BLAST of mRNA_H-canaliculatus_F_contig144.3441.1 vs. uniprot
Match: A0A8C5E236_9TELE (Coiled-coil domain-containing protein 189-like n=1 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5E236_9TELE)

HSP 1 Score: 75.1 bits (183), Expect = 1.050e-14
Identity = 36/100 (36.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:    1 VVLDFHYYNYAFCKERRFDARATSTFLSIMKDILDEDMRTNDLASSLRASFARFEELILRHAVDRPPWTTGVLNPKDVGAITDYVATSYYRHFTLYKHIF 300
            V+L+ +  +  FC+E  F    TSTFLSI+K I D ++ T     ++    +  +EL+L H+V RPP++  +  P+++  + +Y+ TSY++HF LYK++F
Sbjct:   43 VLLELYVQSVLFCREHNFSREQTSTFLSIIKSIHDLNVETP--FDNIEQCVSYCKELLLCHSVRRPPFSINLFGPEEIKCVFEYIYTSYFKHFKLYKYVF 140          
BLAST of mRNA_H-canaliculatus_F_contig144.3441.1 vs. uniprot
Match: UPI001425B7CC (coiled-coil domain-containing protein 189-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425B7CC)

HSP 1 Score: 76.6 bits (187), Expect = 1.230e-14
Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:    1 VVLDFHYYNYAFCKERRFDARATSTFLSIMKDILDEDMRTNDLASSLRASFARFEELILRHAVDRPPWTTGVLNPKDVGAITDYVATSYYRHFTLYKHIF 300
            ++LD  YY   F  + +F     S F SI+K     D+ T     +L   +  F+ELIL HAV RPPW+  + +P+ V  +TDYV  +Y++H+ LYK++F
Sbjct:   62 ILLDLFYYAIQFALDNQFTKEQISAFFSIVKKT--HDVCTETPFDNLELCYDYFKELILCHAVKRPPWSINIFSPEQVRLVTDYVLGTYFKHYKLYKYVF 159          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig144.3441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZX1_9STRA4.330e-3757.00Flagellar C1a complex subunit C1a-32-domain-contai... [more]
A0A6V1RZL7_HETAK3.990e-2946.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
T0R735_SAPDV3.690e-2043.52Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A067CXF4_SAPPC5.540e-1943.81Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A7S1Q3Y6_ALECA1.050e-1842.31Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A0G4GFV0_VITBC3.210e-1739.00Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A2G8KUF3_STIJA3.800e-1540.00Putative coiled-coil domain-containing protein n=1... [more]
A0A8B7Y3C2_ACAPL9.050e-1538.10coiled-coil domain-containing protein 189-like n=1... [more]
A0A8C5E236_9TELE1.050e-1436.00Coiled-coil domain-containing protein 189-like n=1... [more]
UPI001425B7CC1.230e-1438.00coiled-coil domain-containing protein 189-like n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig144contigH-canaliculatus_F_contig144:43735..45375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue1.1e-17
Seed eggNOG ortholog44056.XP_009037610.1
Preferred nameCCDC189
EggNOG free text desc.Flagellar C1a complex subunit C1a-32
EggNOG OGs29WM8@1,2S7XE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size300
Cds size300
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig144.3441.1prot_H-canaliculatus_F_contig144.3441.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig144 43735..45375 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929194.6737926-CDS-H-canaliculatus_F_contig144:43734..438421622929194.6737926-CDS-H-canaliculatus_F_contig144:43734..43842Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig144 43735..43842 +
1696845712.4403229-CDS-H-canaliculatus_F_contig144:43734..438421696845712.4403229-CDS-H-canaliculatus_F_contig144:43734..43842Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig144 43735..43842 +
1622929194.6869886-CDS-H-canaliculatus_F_contig144:44705..448601622929194.6869886-CDS-H-canaliculatus_F_contig144:44705..44860Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig144 44706..44860 +
1696845712.4519947-CDS-H-canaliculatus_F_contig144:44705..448601696845712.4519947-CDS-H-canaliculatus_F_contig144:44705..44860Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig144 44706..44860 +
1622929194.700155-CDS-H-canaliculatus_F_contig144:45338..453751622929194.700155-CDS-H-canaliculatus_F_contig144:45338..45375Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig144 45339..45375 +
1696845712.465131-CDS-H-canaliculatus_F_contig144:45338..453751696845712.465131-CDS-H-canaliculatus_F_contig144:45338..45375Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig144 45339..45375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig144.3441.1

>prot_H-canaliculatus_F_contig144.3441.1 ID=prot_H-canaliculatus_F_contig144.3441.1|Name=mRNA_H-canaliculatus_F_contig144.3441.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=100bp
VVLDFHYYNYAFCKERRFDARATSTFLSIMKDILDEDMRTNDLASSLRAS
FARFEELILRHAVDRPPWTTGVLNPKDVGAITDYVATSYYRHFTLYKHIF
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mRNA from alignment at H-canaliculatus_F_contig144:43735..45375+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig144.3441.1 ID=mRNA_H-canaliculatus_F_contig144.3441.1|Name=mRNA_H-canaliculatus_F_contig144.3441.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1641bp|location=Sequence derived from alignment at H-canaliculatus_F_contig144:43735..45375+ (Hapterophycus canaliculatus Oshoro5f female)
GTGGTGCTCGATTTTCACTACTACAACTACGCTTTCTGTAAGGAACGGCG TTTCGACGCTCGCGCGACGTCGACATTCCTGTCCATCATGAAAGATATCC TGGACGAGGTATGAGTGCCACGGCGTTGCATACAAGTACTGACCTGCTCT CATAAAATGTTTCTTCTGTAACACCTTTTCGGCCAGAAGGGAAAATTGAA CCGGTTGAGACCTAGAAATATGAAGATTCCACAACAGCCTTGAATCTCGT CCAGCACCAAGTGTGCCACAAATCAATAGCTTGCTGGGTCGGAGGTAGCT CATGCAGAGTAGGCAGCATGTGTCCCTGATGGTTGAGTCCCAGCGTGTTA CCACCAAAATGACCAGAGATCTCCGGGGGGGTTGCGCCCCCTCACCAGTT ACAATTACTCAATAAATGATGGCTTTGTGATTAGAGAGAATGGGTTGATC TCGTTCCTGGTCGCCTGAATACAAAGGTAAAGACTGCGGGTTCAAATCGA AACCTCGACCTATCCTTCTAAGAGCAGGCTATTCAGGTTATCCCTGCGCT ACGTGGTTAGCTTATTTTGTCATGTAACGCAGCCCTTCCCCTTTGCCCTT CCCCTTTCAAGCCTGAGGTGGGATTTCGAAAACGAAGTAAGGCCTTGCGG ATATCCTCACCGGCACGGAAGCGTGTGCACTGTGCGGCAAACGCTGGTTC TTAGAATTTTTTACCAGCGACAAATGTTGAGAATAGGGATGAATACTGAC ATTTTGCGAGAACCGGCAGAACATGGGTCCGAACCTATCGGACCGCGTCC ATGCCACTCCTGATGAGAGCCCTCTAACTATCCTCTGGGCCATGGACTGT CCTTGATACTCGTAGCTCATTCACAGTTCTTTAGCCCTTACCCATTATAC CTTTGTCCTTTCCACTATGAACACTCGGCCCACCAACCTGCACTCGCGTG CGACGACGGTGAACGTATCAGGATATGCGGACAAACGACTTGGCTTCTTC ACTAAGGGCTTCGTTCGCTCGATTTGAGGAACTTATCCTTCGACACGCGG TCGATCGCCCGCCGTGGACAACAGGAGTGCTCAACCCGAAAGACGTTGGA GCAATCACAGACTACGTGGCCACAAGGTACAAGACTGGACGCTTTTATCG TTTCTTGAAATTTCGCGTTAAGTCTTCCGTTTGGATAGATCTTCGTTTCA CGTATTGTGTGTGGTACTGGGCGACGCAGCCGCAACCGTGATGGTTTCTG GCTCATGGGTATGATCCTTATCCTTCATGTACCTGCGATAGTGGCCTTCT TCAGCAGCATAGTTTTGAAAGAACGTTGTAATATGACACTGGTACTTGGC TGCTCTTAACTGTTAGCCCCGTTTGGTGTCGTTCACTTAGTAGCGATCTG CGTCTTCGTGTGGTCAGCCGTCCGTCAACAGAACGAGATCTTGATAAAGC AGGATGGCCGAGAGCCGTGATCGATCTCTTCAGTCCATGGCATGTCGAGA CGCAACTCAGGATATATCGCTTAGCAATACGTCGTTTGCTTACAGTGGCT GACGACATGACCCTATGATGCCAAACGCGCAACACAATTTCATGGCGATA AAAGCTACTACCGGCACTTCACACTGTACAAGCACATCTTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig144:43735..45375+

>mRNA_H-canaliculatus_F_contig144.3441.1 ID=mRNA_H-canaliculatus_F_contig144.3441.1|Name=mRNA_H-canaliculatus_F_contig144.3441.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=600bp|location=Sequence derived from alignment at H-canaliculatus_F_contig144:43735..45375+ (Hapterophycus canaliculatus Oshoro5f female)
GTGGTGCTCGATTTTCACTACTACAACTACGCTTTCTGTAAGGAACGGCG
TTTCGACGCTCGCGCGACGTCGACATTCCTGTCCATCATGAAAGATATCC
TGGACGAGGTGGTGCTCGATTTTCACTACTACAACTACGCTTTCTGTAAG
GAACGGCGTTTCGACGCTCGCGCGACGTCGACATTCCTGTCCATCATGAA
AGATATCCTGGACGAGGATATGCGGACAAACGACTTGGCTTCTTCACTAA
GGGCTTCGTTCGCTCGATTTGAGGAACTTATCCTTCGACACGCGGTCGAT
CGCCCGCCGTGGACAACAGGAGTGCTCAACCCGAAAGACGTTGGAGCAAT
CACAGACTACGTGGCCACAAGGATATGCGGACAAACGACTTGGCTTCTTC
ACTAAGGGCTTCGTTCGCTCGATTTGAGGAACTTATCCTTCGACACGCGG
TCGATCGCCCGCCGTGGACAACAGGAGTGCTCAACCCGAAAGACGTTGGA
GCAATCACAGACTACGTGGCCACAAGCTACTACCGGCACTTCACACTGTA
CAAGCACATCTTCCTACTACCGGCACTTCACACTGTACAAGCACATCTTC
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