mRNA_H-canaliculatus_F_contig144.3440.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig144.3440.1
Unique NamemRNA_H-canaliculatus_F_contig144.3440.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig144.3440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig144contigH-canaliculatus_F_contig144:39779..42153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-09_002100.1
Exons5
Model size879
Cds size879
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig144.3440.1prot_H-canaliculatus_F_contig144.3440.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig144 39779..42153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929194.569918-CDS-H-canaliculatus_F_contig144:39778..399791622929194.569918-CDS-H-canaliculatus_F_contig144:39778..39979Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig144 39779..39979 -
1696845712.3881574-CDS-H-canaliculatus_F_contig144:39778..399791696845712.3881574-CDS-H-canaliculatus_F_contig144:39778..39979Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig144 39779..39979 -
1622929194.5865066-CDS-H-canaliculatus_F_contig144:40377..405531622929194.5865066-CDS-H-canaliculatus_F_contig144:40377..40553Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig144 40378..40553 -
1696845712.3982828-CDS-H-canaliculatus_F_contig144:40377..405531696845712.3982828-CDS-H-canaliculatus_F_contig144:40377..40553Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig144 40378..40553 -
1622929194.6000783-CDS-H-canaliculatus_F_contig144:40838..409801622929194.6000783-CDS-H-canaliculatus_F_contig144:40838..40980Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig144 40839..40980 -
1696845712.409942-CDS-H-canaliculatus_F_contig144:40838..409801696845712.409942-CDS-H-canaliculatus_F_contig144:40838..40980Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig144 40839..40980 -
1622929194.6133885-CDS-H-canaliculatus_F_contig144:41456..415051622929194.6133885-CDS-H-canaliculatus_F_contig144:41456..41505Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig144 41457..41505 -
1696845712.419492-CDS-H-canaliculatus_F_contig144:41456..415051696845712.419492-CDS-H-canaliculatus_F_contig144:41456..41505Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig144 41457..41505 -
1622929194.6296308-CDS-H-canaliculatus_F_contig144:41842..421531622929194.6296308-CDS-H-canaliculatus_F_contig144:41842..42153Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig144 41843..42153 -
1696845712.428426-CDS-H-canaliculatus_F_contig144:41842..421531696845712.428426-CDS-H-canaliculatus_F_contig144:41842..42153Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig144 41843..42153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig144.3440.1

>prot_H-canaliculatus_F_contig144.3440.1 ID=prot_H-canaliculatus_F_contig144.3440.1|Name=mRNA_H-canaliculatus_F_contig144.3440.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=293bp
CCSADPLFPGSWCSCPLTYSAKRPTALVTVSSLHENDQGITAFERTSRAN
KGQDQTWPLASTILTSTSRDSKMSHGCNDLVWDYVRPSSSFQNVGSYAPP
STPRVHAFPAVPRTEPVDWKMQVPVGGIGRDICSRRHNPYRRGFTSFNLR
FTYLKEGGHQVSRSPGPGNYETRHLTGGALIKRPKTASPCFRRPGGRLDF
GGNGTWHAETPLECAEGRGTVGGDLKRQPQHYSLSFRSRAERLVVNKPPG
TTHEGVGPGCYDLSKDGKSLGVRTEKRVGRGGSGSMGSTNQFL
back to top

mRNA from alignment at H-canaliculatus_F_contig144:39779..42153-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig144.3440.1 ID=mRNA_H-canaliculatus_F_contig144.3440.1|Name=mRNA_H-canaliculatus_F_contig144.3440.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2375bp|location=Sequence derived from alignment at H-canaliculatus_F_contig144:39779..42153- (Hapterophycus canaliculatus Oshoro5f female)
TGTTGCTCTGCCGACCCTCTATTTCCTGGGTCGTGGTGCTCTTGTCCTCT
AACTTACTCGGCAAAGCGTCCGACAGCTCTGGTCACCGTTTCTAGCTTGC
ATGAGAACGACCAGGGCATCACTGCATTTGAAAGGACCTCACGCGCAAAC
AAAGGACAAGACCAGACCTGGCCTCTTGCCTCAACAATCTTGACGTCAAC
CAGCAGAGATTCAAAAATGAGCCACGGGTGCAATGACCTCGTCTGGGACT
ACGTGCGACCATCATCCAGCTTCCAAAATGTCGGAAGCTACGCTCCTCCT
TCAACCCCTCGGTGTGTAGGGTTGCAGTGAATTCTTATGGTAGATCTACA
GGGACTTGTGTCAGGTACAAGTACAAAGTGCGTTAGAGAGGCCCTGTTCT
GAGACTGCTGTACCACTTCATTGAGGTAGAGATGCACGCACGTTAGCACG
TCACCTCGGTTCTATGCACTCGTATCCCGCCATCGATGAGCTGTTATTTC
GCCGCTTTACGCGAGCACGACAGAGGACTGATATGCCCCGATGGCTCTTA
CTTCACGAATATTTCAACGCACATGTTCAACCTTCTCATCATGCATCTCC
TCTACGGATATATACTCCTCTACTTGGCAACGGATGGGTGGTGACTAGGG
TACATGCCTTCCCAGCAGTACCAAGAACAGAGCCGGTGGACTGGAAGGTG
TGTGATGCACTTGCCTGAAACTGTGGCTTTTGCCCAGATGCGAGTTGGGC
TAGAGATCGCTTTGTTGTCTTCCACCTGATCACACATCTGTCTTAGCTGC
ATTGCTGTAGGCCAGTTTTGGATGAAAGATTGATCCTGGAAGGAATCATT
CAGTACATTACGACACACTTATGTCGAATGGTGGGTTTATGACTTGAGAC
TTTCAAAGATAGTGTGATGAACACGTATTTCAAAAAGTGTGAGCGATGTA
TAAATACTACCAGGTTCATTCACCGTTGAGAACTGAATGGGTGGATGTAT
TCGCGGAACTTTCGGTAAAGTAAAGGGCACAAGGTATTCATGAGAGATCC
TTGACTGTGGAGGCATTTTGCTACAAGCATGCATTTTACAATACGCCTGT
AGAAGAGGAATCTGCGACACGCAGGAACGGTCAGCGTTGCACTGCACCTG
CTTGGCTGTCACCATTGCTACAGATGCAAGTGCCAGTTGGTGGTATCGGA
AGGGATATTTGCAGCAGGCGACACAACCCTTACCGACGGGGATTTACCTC
GTTCAACCTTCGCTTCACCTACCTTAAAGAAGGCGGGCACCAGGTGTCCC
GATCACCGGGCCCCGGTAAGCAAGCCGCTCGCATCGTCTTGTTGCCATCG
TTAGGCGGCACCCTCGGAATGGCGCGCCAGTAATCTTCGACATCAACATC
AAAATGGTGGTACTCGTTTATTTGCTCAAGTTGTGTGACAAGACGCGTAA
AGCAGACTTTGGTAAAGGGTTGAAACGGAAGATACCCGAAAGGTAGAGCA
CAAAAAAAAGCCCCTAGAATACTTAAGGTACATGATTTCCCATGGTTAGT
TTTGAAGTAGCATATCCTCATCCATTGCGCACTTTTCTGCCAACCTGAAG
GCAACTACGAGACTCGACATCTTACGGGCGGTGCCCTGATCAAGCGCCCC
AAGACAGCATCTCCATGTTTCCGTCGCCCGGGCGGTCGGCTAGACTTCGG
TGGCAACGGGACGTGGCACGCGGAGACACCGCTTGAATGTGCCGAGGGGC
GCGGTACTGTGGGGGGGGACCTGAAGGTTGAGCACCAATCAATGGCTATG
AGGACTACTTTTGAAGTCTTCCCGATTTCTTTTGAGAAGATATCAAATCG
AGTAAATTGCCCTCCCTGATTTGAAGAGTAGCGCTAGTAACACAGCGAGC
CGATGAGGTCGAGTGTGAAATAGCTGTGTCCGATGGTCTGTATAAGAAGT
ATTCCCACTCAGTTCGAAAAAAGCTTTGAGAATCGGCGTCATTTTGTGCT
GTCGTTGTGCTGTACAGAAAATCCGTCACGTCACAAAAAAGGCGAGCTCA
ACACACACAGCGGTGGGTAACGATGTCTTCAGTCAAATGCATATTGCTCT
ACAGCTCATATTGTCGCCTATTATGGCCAAAGTTGTCCATGTTCCTGTCA
TATCCCCTGGTCCCTGCTTACCAGAGACAACCGCAGCACTACAGCCTGAG
CTTCCGATCAAGAGCGGAAAGGCTGGTAGTAAACAAACCCCCTGGCACCA
CTCATGAGGGCGTCGGTCCTGGCTGTTACGACCTCTCGAAGGACGGCAAG
TCCCTGGGGGTGAGGACAGAAAAACGGGTGGGCAGAGGAGGAAGTGGAAG
CATGGGGTCGACAAACCAATTTCTC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig144:39779..42153-

>mRNA_H-canaliculatus_F_contig144.3440.1 ID=mRNA_H-canaliculatus_F_contig144.3440.1|Name=mRNA_H-canaliculatus_F_contig144.3440.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1758bp|location=Sequence derived from alignment at H-canaliculatus_F_contig144:39779..42153- (Hapterophycus canaliculatus Oshoro5f female)
TGTTGCTCTGCCGACCCTCTATTTCCTGGGTCGTGGTGCTCTTGTCCTCT
AACTTACTCGGCAAAGCGTCCGACAGCTCTGGTCACCGTTTCTAGCTTGC
ATGAGAACGACCAGGGCATCACTGCATTTGAAAGGACCTCACGCGCAAAC
AAAGGACAAGACCAGACCTGGCCTCTTGCCTCAACAATCTTGACGTCAAC
CAGCAGAGATTCAAAAATGAGCCACGGGTGCAATGACCTCGTCTGGGACT
ACGTGCGACCATCATCCAGCTTCCAAAATGTCGGAAGCTACGCTCCTCCT
TCAACCCCTCGTGTTGCTCTGCCGACCCTCTATTTCCTGGGTCGTGGTGC
TCTTGTCCTCTAACTTACTCGGCAAAGCGTCCGACAGCTCTGGTCACCGT
TTCTAGCTTGCATGAGAACGACCAGGGCATCACTGCATTTGAAAGGACCT
CACGCGCAAACAAAGGACAAGACCAGACCTGGCCTCTTGCCTCAACAATC
TTGACGTCAACCAGCAGAGATTCAAAAATGAGCCACGGGTGCAATGACCT
CGTCTGGGACTACGTGCGACCATCATCCAGCTTCCAAAATGTCGGAAGCT
ACGCTCCTCCTTCAACCCCTCGGGTACATGCCTTCCCAGCAGTACCAAGA
ACAGAGCCGGTGGACTGGAAGGGTACATGCCTTCCCAGCAGTACCAAGAA
CAGAGCCGGTGGACTGGAAGATGCAAGTGCCAGTTGGTGGTATCGGAAGG
GATATTTGCAGCAGGCGACACAACCCTTACCGACGGGGATTTACCTCGTT
CAACCTTCGCTTCACCTACCTTAAAGAAGGCGGGCACCAGGTGTCCCGAT
CACCGGGCCCCGATGCAAGTGCCAGTTGGTGGTATCGGAAGGGATATTTG
CAGCAGGCGACACAACCCTTACCGACGGGGATTTACCTCGTTCAACCTTC
GCTTCACCTACCTTAAAGAAGGCGGGCACCAGGTGTCCCGATCACCGGGC
CCCGGCAACTACGAGACTCGACATCTTACGGGCGGTGCCCTGATCAAGCG
CCCCAAGACAGCATCTCCATGTTTCCGTCGCCCGGGCGGTCGGCTAGACT
TCGGTGGCAACGGGACGTGGCACGCGGAGACACCGCTTGAATGTGCCGAG
GGGCGCGGTACTGTGGGGGGGGACCTGAAGGCAACTACGAGACTCGACAT
CTTACGGGCGGTGCCCTGATCAAGCGCCCCAAGACAGCATCTCCATGTTT
CCGTCGCCCGGGCGGTCGGCTAGACTTCGGTGGCAACGGGACGTGGCACG
CGGAGACACCGCTTGAATGTGCCGAGGGGCGCGGTACTGTGGGGGGGGAC
CTGAAGAGACAACCGCAGCACTACAGCCTGAGCTTCCGATCAAGAGCGGA
AAGGCTGGTAGTAAACAAACCCCCTGGCACCACTCATGAGGGCGTCGGTC
CTGGCTGTTACGACCTCTCGAAGGACGGCAAGTCCCTGGGGGTGAGGACA
GAAAAACGGGTGGGCAGAGGAGGAAGTGGAAGCATGGGGTCGACAAACCA
ATTTCTCAGACAACCGCAGCACTACAGCCTGAGCTTCCGATCAAGAGCGG
AAAGGCTGGTAGTAAACAAACCCCCTGGCACCACTCATGAGGGCGTCGGT
CCTGGCTGTTACGACCTCTCGAAGGACGGCAAGTCCCTGGGGGTGAGGAC
AGAAAAACGGGTGGGCAGAGGAGGAAGTGGAAGCATGGGGTCGACAAACC
AATTTCTC
back to top