mRNA_H-canaliculatus_F_contig14397.3435.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14397.3435.1
Unique NamemRNA_H-canaliculatus_F_contig14397.3435.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14397.3435.1 vs. uniprot
Match: D7FKN0_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKN0_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 6.760e-11
Identity = 54/114 (47.37%), Postives = 63/114 (55.26%), Query Frame = -2 
Query:    3 RHSRPPSLDLGGRALD-APRGTSSXXXXXXXXLPQQQLAVTSPSATDR-LQALGASPPEISPLQLAAMVAAGRQRMWSGS-GALRLTEAAGDAGGAVNPVGPAYQADAAVGVTG 335
            RHSRPPSLDLGGRA +  PRG S             Q A  + +A +R  QAL ASPP+  PLQ+AAMV AGRQRMW G+ G L + E  G A          YQ D A+   G
Sbjct:  479 RHSRPPSLDLGGRAPEPTPRGNSPGGQVLAVA---SQAAAGAAAAPERSFQALNASPPDEYPLQVAAMVTAGRQRMWGGAAGGLGVAEGGGFA----------YQGDPALAAAG 579
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14397.3435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKN0_ECTSI6.760e-1147.37Protein kinase domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14397contigH-canaliculatus_F_contig14397:748..1137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size392
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929193.7154148-CDS-H-canaliculatus_F_contig14397:747..11371622929193.7154148-CDS-H-canaliculatus_F_contig14397:747..1137Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14397 748..1137 +
1696845712.1994317-CDS-H-canaliculatus_F_contig14397:747..11371696845712.1994317-CDS-H-canaliculatus_F_contig14397:747..1137Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14397 748..1137 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14397.3435.1prot_H-canaliculatus_F_contig14397.3435.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14397 748..1137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14397.3435.1

>prot_H-canaliculatus_F_contig14397.3435.1 ID=prot_H-canaliculatus_F_contig14397.3435.1|Name=mRNA_H-canaliculatus_F_contig14397.3435.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=130bp
PPVTPTAASAWYAGPTGLTAPPASPAASVSLSAPDPLHILWRPAATIAAS
WSGLISGGEAPSAWRRSVADGDVTASCCCGSWWWWWWPLDEVPRGASSAR
PPRSSDGGRECRAAPAPAPPPPGEPSGGPL
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mRNA from alignment at H-canaliculatus_F_contig14397:748..1137+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14397.3435.1 ID=mRNA_H-canaliculatus_F_contig14397.3435.1|Name=mRNA_H-canaliculatus_F_contig14397.3435.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=390bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14397:748..1137+ (Hapterophycus canaliculatus Oshoro5f female)
CCACCGGTCACCCCGACAGCCGCATCCGCTTGGTACGCGGGTCCCACAGG
ATTAACCGCGCCGCCTGCATCTCCGGCAGCCTCCGTAAGTCTAAGCGCGC
CCGACCCGCTCCACATCCTCTGGCGCCCGGCCGCCACCATCGCGGCCAGC
TGGAGCGGACTTATCTCCGGAGGGGAAGCGCCGAGCGCCTGGAGGCGGTC
CGTCGCCGACGGCGACGTCACCGCCAGCTGCTGCTGCGGTAGCTGGTGGT
GGTGGTGGTGGCCGCTGGACGAGGTCCCTCGAGGCGCGTCCAGCGCTCGC
CCCCCGAGATCAAGCGACGGGGGCCGTGAATGCCGAGCGGCCCCCGCCCC
GGCCCCGCCCCCCCCGGGGGAGCCGTCCGGCGGCCCCCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14397:748..1137+

>mRNA_H-canaliculatus_F_contig14397.3435.1 ID=mRNA_H-canaliculatus_F_contig14397.3435.1|Name=mRNA_H-canaliculatus_F_contig14397.3435.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=780bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14397:748..1137+ (Hapterophycus canaliculatus Oshoro5f female)
CCACCGGTCACCCCGACAGCCGCATCCGCTTGGTACGCGGGTCCCACAGG
ATTAACCGCGCCGCCTGCATCTCCGGCAGCCTCCGTAAGTCTAAGCGCGC
CCGACCCGCTCCACATCCTCTGGCGCCCGGCCGCCACCATCGCGGCCAGC
TGGAGCGGACTTATCTCCGGAGGGGAAGCGCCGAGCGCCTGGAGGCGGTC
CGTCGCCGACGGCGACGTCACCGCCAGCTGCTGCTGCGGTAGCTGGTGGT
GGTGGTGGTGGCCGCTGGACGAGGTCCCTCGAGGCGCGTCCAGCGCTCGC
CCCCCGAGATCAAGCGACGGGGGCCGTGAATGCCGAGCGGCCCCCGCCCC
GGCCCCGCCCCCCCCGGGGGAGCCGTCCGGCGGCCCCCTGCCACCGGTCA
CCCCGACAGCCGCATCCGCTTGGTACGCGGGTCCCACAGGATTAACCGCG
CCGCCTGCATCTCCGGCAGCCTCCGTAAGTCTAAGCGCGCCCGACCCGCT
CCACATCCTCTGGCGCCCGGCCGCCACCATCGCGGCCAGCTGGAGCGGAC
TTATCTCCGGAGGGGAAGCGCCGAGCGCCTGGAGGCGGTCCGTCGCCGAC
GGCGACGTCACCGCCAGCTGCTGCTGCGGTAGCTGGTGGTGGTGGTGGTG
GCCGCTGGACGAGGTCCCTCGAGGCGCGTCCAGCGCTCGCCCCCCGAGAT
CAAGCGACGGGGGCCGTGAATGCCGAGCGGCCCCCGCCCCGGCCCCGCCC
CCCCCGGGGGAGCCGTCCGGCGGCCCCCTG
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