mRNA_H-canaliculatus_F_contig14381.3430.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14381.3430.1
Unique NamemRNA_H-canaliculatus_F_contig14381.3430.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig14381.3430.1 vs. uniprot
Match: D8LNA3_ECTSI (Kinesin-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNA3_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.390e-28
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 1
Query:   13 FQECIRALDSDSVHVPYRASKLTLVLKDSFTRKAARTVMIATVSPGASSADHTINTLRYADR 198
             +ECIRALDSDSVHVPYRASKLTLVLKDSFTRKAARTVMIATVSPGAS+ADHTINTLRYADR
Sbjct:  333 LKECIRALDSDSVHVPYRASKLTLVLKDSFTRKAARTVMIATVSPGASAADHTINTLRYADR 394          
BLAST of mRNA_H-canaliculatus_F_contig14381.3430.1 vs. uniprot
Match: A0A835YJB8_9STRA (Kinesin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJB8_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.070e-25
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 1
Query:   13 FQECIRALDSDSVHVPYRASKLTLVLKDSFTRKAARTVMIATVSPGASSADHTINTLRYADR 198
             +ECIRALDS   HVPYRASKLTLVLKDSFTR+AARTVMIATVSPGAS ADHT+NTLRYADR
Sbjct:  328 LKECIRALDSGEAHVPYRASKLTLVLKDSFTRRAARTVMIATVSPGASHADHTLNTLRYADR 389          
BLAST of mRNA_H-canaliculatus_F_contig14381.3430.1 vs. uniprot
Match: A0A7S4D754_HETAK (Kinesin-like protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D754_HETAK)

HSP 1 Score: 100 bits (249), Expect = 1.770e-24
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 1
Query:   13 FQECIRALDSDSVHVPYRASKLTLVLKDSFTRKA-ARTVMIATVSPGASSADHTINTLRYADR 198
             +ECIRALDS+  H+PYRASKLTLVLKDSFT K+ ARTVMIATV+P ASSADHTINTLRYADR
Sbjct:  164 LKECIRALDSNDTHIPYRASKLTLVLKDSFTNKSSARTVMIATVAPNASSADHTINTLRYADR 226          
BLAST of mRNA_H-canaliculatus_F_contig14381.3430.1 vs. uniprot
Match: A0A7S2A120_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A120_TRICV)

HSP 1 Score: 94.0 bits (232), Expect = 1.910e-23
Identity = 49/68 (72.06%), Postives = 55/68 (80.88%), Query Frame = 1
Query:   13 FQECIRALDSDSV------HVPYRASKLTLVLKDSFTRKAARTVMIATVSPGASSADHTINTLRYADR 198
             +EC+RALDS+        HVPYRASKLTL+LKD FT + ART MIATVSPGASSADHT+NTLRYADR
Sbjct:    9 LKECVRALDSNRSAGGGGRHVPYRASKLTLILKDCFTSRLARTTMIATVSPGASSADHTLNTLRYADR 76          
BLAST of mRNA_H-canaliculatus_F_contig14381.3430.1 vs. uniprot
Match: A0A7S2UNY4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UNY4_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.690e-22
Identity = 50/64 (78.12%), Postives = 54/64 (84.38%), Query Frame = 1
Query:   13 FQECIRALDSDS--VHVPYRASKLTLVLKDSFTRKAARTVMIATVSPGASSADHTINTLRYADR 198
             +ECIRALDS     HVPYRASKLTL+LKD FT + A+T MIATVSPGASSADHTINTLRYADR
Sbjct:  109 LKECIRALDSGKGGKHVPYRASKLTLILKDCFTSELAQTSMIATVSPGASSADHTINTLRYADR 172          
BLAST of mRNA_H-canaliculatus_F_contig14381.3430.1 vs. uniprot
Match: A0A7S1VNB5_9STRA (Kinesin-like protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VNB5_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.690e-22
Identity = 47/62 (75.81%), Postives = 55/62 (88.71%), Query Frame = 1
Query:   13 FQECIRALDSDSVHVPYRASKLTLVLKDSFTRKAARTVMIATVSPGASSADHTINTLRYADR 198
             +ECIRALD+ + HVPYRASKLTL+LKD FT + A+T MIATVSPG+SSADHT+NTLRYADR
Sbjct:  206 LKECIRALDNKNTHVPYRASKLTLILKDCFTSRNAKTSMIATVSPGSSSADHTLNTLRYADR 267          
BLAST of mRNA_H-canaliculatus_F_contig14381.3430.1 vs. uniprot
Match: A0A7S4N7H4_9STRA (Kinesin-like protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N7H4_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 5.710e-22
Identity = 51/65 (78.46%), Postives = 55/65 (84.62%), Query Frame = 1
Query:   13 FQECIRALDS---DSVHVPYRASKLTLVLKDSFTRKAARTVMIATVSPGASSADHTINTLRYADR 198
             +ECIRALDS    + HVPYRASKLTL+LKD FT K ART MIATVSPGASSADHT+NTLRYADR
Sbjct:  353 LKECIRALDSGRGSARHVPYRASKLTLILKDCFTSKLARTTMIATVSPGASSADHTVNTLRYADR 417          
BLAST of mRNA_H-canaliculatus_F_contig14381.3430.1 vs. uniprot
Match: A0A7S2UQG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQG3_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 6.740e-22
Identity = 50/64 (78.12%), Postives = 54/64 (84.38%), Query Frame = 1
Query:   13 FQECIRALDSDS--VHVPYRASKLTLVLKDSFTRKAARTVMIATVSPGASSADHTINTLRYADR 198
             +ECIRALDS     HVPYRASKLTL+LKD FT + A+T MIATVSPGASSADHTINTLRYADR
Sbjct:  119 LKECIRALDSGKGGKHVPYRASKLTLILKDCFTSELAQTSMIATVSPGASSADHTINTLRYADR 182          
BLAST of mRNA_H-canaliculatus_F_contig14381.3430.1 vs. uniprot
Match: W7UCQ1_9STRA (Kinesin-like protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7UCQ1_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.490e-21
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 1
Query:   13 FQECIRALDSDS-VHVPYRASKLTLVLKDSFTRKAARTVMIATVSPGASSADHTINTLRYADR 198
             +ECIRALD+    HVPYRASKLTLVLKD FT++ ARTVMIATVSP ASSADHT+NTLRYADR
Sbjct:  394 LKECIRALDAGGGTHVPYRASKLTLVLKDCFTKEKARTVMIATVSPNASSADHTLNTLRYADR 456          
BLAST of mRNA_H-canaliculatus_F_contig14381.3430.1 vs. uniprot
Match: A0A7S3V5B6_9STRA (Kinesin-like protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5B6_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.960e-21
Identity = 48/62 (77.42%), Postives = 51/62 (82.26%), Query Frame = 1
Query:   13 FQECIRALDSDSVHVPYRASKLTLVLKDSFTRKAARTVMIATVSPGASSADHTINTLRYADR 198
             +ECIRAL   S HVPYRASKLTL+LKD FT   ART MIATVSPG SSADHTINTLRY+DR
Sbjct:  349 LKECIRALGGSSKHVPYRASKLTLILKDCFTSSLARTAMIATVSPGGSSADHTINTLRYSDR 410          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14381.3430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNA3_ECTSI1.390e-2895.16Kinesin-like protein n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YJB8_9STRA1.070e-2587.10Kinesin-like protein n=1 Tax=Tribonema minus TaxID... [more]
A0A7S4D754_HETAK1.770e-2482.54Kinesin-like protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2A120_TRICV1.910e-2372.06Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2UNY4_9STRA2.690e-2278.13Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1VNB5_9STRA3.690e-2275.81Kinesin-like protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S4N7H4_9STRA5.710e-2278.46Kinesin-like protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2UQG3_9STRA6.740e-2278.13Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
W7UCQ1_9STRA1.490e-2179.37Kinesin-like protein n=3 Tax=Monodopsidaceae TaxID... [more]
A0A7S3V5B6_9STRA1.960e-2177.42Kinesin-like protein n=2 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14381contigH-canaliculatus_F_contig14381:2160..2357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue3.1e-24
Seed eggNOG ortholog2880.D8LNA3
KEGG koko:K10393
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0246@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionKinesin motor domain
Ec32 orthologEc-04_004590.1
Exons1
Model size198
Cds size198
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929192.8888476-CDS-H-canaliculatus_F_contig14381:2159..23571622929192.8888476-CDS-H-canaliculatus_F_contig14381:2159..2357Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14381 2160..2357 -
1696845711.9223084-CDS-H-canaliculatus_F_contig14381:2159..23571696845711.9223084-CDS-H-canaliculatus_F_contig14381:2159..2357Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14381 2160..2357 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14381.3430.1prot_H-canaliculatus_F_contig14381.3430.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14381 2160..2357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14381.3430.1

>prot_H-canaliculatus_F_contig14381.3430.1 ID=prot_H-canaliculatus_F_contig14381.3430.1|Name=mRNA_H-canaliculatus_F_contig14381.3430.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=66bp
MPSQFQECIRALDSDSVHVPYRASKLTLVLKDSFTRKAARTVMIATVSPG
ASSADHTINTLRYADR
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mRNA from alignment at H-canaliculatus_F_contig14381:2160..2357-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14381.3430.1 ID=mRNA_H-canaliculatus_F_contig14381.3430.1|Name=mRNA_H-canaliculatus_F_contig14381.3430.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=198bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14381:2160..2357- (Hapterophycus canaliculatus Oshoro5f female)
ATGCCTTCGCAATTCCAGGAGTGCATCCGCGCCCTCGACAGCGACAGCGT CCACGTGCCATACCGCGCCTCCAAGCTGACGCTCGTCCTCAAGGACAGCT TCACTCGCAAGGCCGCCCGCACCGTAATGATCGCCACCGTCTCCCCCGGC GCGTCTTCGGCCGACCACACCATCAACACTCTGCGCTACGCGGACAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14381:2160..2357-

>mRNA_H-canaliculatus_F_contig14381.3430.1 ID=mRNA_H-canaliculatus_F_contig14381.3430.1|Name=mRNA_H-canaliculatus_F_contig14381.3430.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=396bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14381:2160..2357- (Hapterophycus canaliculatus Oshoro5f female)
ATGCCTTCGCAATTCCAGGAGTGCATCCGCGCCCTCGACAGCGACAGCGT
CCACGTGCCATACCGCGCCTCCAAGCTGACGCTCGTCCTCAAGGACAGCT
TCACTCGCAAGGCCGCCCGCACCGTAATGATCGCCACCGTCTCCCCCGGC
GCGTCTTCGGCCGACCACACCATCAACACTCTGCGCTACGCGGACAGGAT
GCCTTCGCAATTCCAGGAGTGCATCCGCGCCCTCGACAGCGACAGCGTCC
ACGTGCCATACCGCGCCTCCAAGCTGACGCTCGTCCTCAAGGACAGCTTC
ACTCGCAAGGCCGCCCGCACCGTAATGATCGCCACCGTCTCCCCCGGCGC
GTCTTCGGCCGACCACACCATCAACACTCTGCGCTACGCGGACAGG
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