mRNA_H-canaliculatus_F_contig1438.3426.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1438.3426.1
Unique NamemRNA_H-canaliculatus_F_contig1438.3426.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1438.3426.1 vs. uniprot
Match: A0A6H5JJB7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJB7_9PHAE)

HSP 1 Score: 426 bits (1095), Expect = 2.190e-142
Identity = 234/325 (72.00%), Postives = 264/325 (81.23%), Query Frame = 3 
Query:  411 TAVAALSLTLGTVAGFISTTPTTGGCHGSSLFRPDPRGARTVTSGPSRNSATTAPAATFMSLKPSPRQ-RFIPPWRRPAATKQGS--GRGFAFLRGSAADEDEDDEVYEYXXXXGEVYGDGEDELDRSVVKQLKRSAAVFRRVSWVSWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGVALALGSLACSAASVCWTWGYNLKAKGWKNLGTLAEVDDAQLRMRNSLKMGLYINVAGMLLALVGAEQIVGTLVAKVLYSQGFQPNVVMGTTGAAEVAQAQFRALDVFIVQANTNTLLSHFCSLAASLWLLARTPKLARLAAKG 1376
            +A A L+LT+G+VAGF+   P   GCH S+        +R +T      S TT   A  MSL+P  RQ R +P W RP A  +G   GR  + LRG AA+EDE +E+YEY    GE Y DGE+ LDRSV+KQLKRS  VFR+VSW+SWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGVALA+ SLACSAAS+CWTWGYNLKAKGW+NLGTLAEVDDAQ+RMR SL+MGLYINVAGMLLALVGAEQIVGTLVAKVLY+QGFQP+V++G+ GAAEVAQAQFRALDVFIVQANTNTLLSHFCSLAASLWLLARTPKLA+LA  G
Sbjct:    8 SATAVLALTVGSVAGFVPPPPAAAGCHRSAFLCRGASNSRALTP----RSPTTG--AALMSLEPFRRQQRILPRWVRPGAAARGGLFGRVPSRLRGVAAEEDEGEEMYEYDDVDGEEYNDGEEILDRSVIKQLKRSTTVFRQVSWLSWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGVALAVASLACSAASICWTWGYNLKAKGWRNLGTLAEVDDAQVRMRGSLRMGLYINVAGMLLALVGAEQIVGTLVAKVLYAQGFQPSVMVGSAGAAEVAQAQFRALDVFIVQANTNTLLSHFCSLAASLWLLARTPKLAKLAKSG 326
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1438.3426.1 vs. uniprot
Match: A0A836CL61_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL61_9STRA)

HSP 1 Score: 190 bits (482), Expect = 7.930e-52
Identity = 119/233 (51.07%), Postives = 155/233 (66.52%), Query Frame = 3 
Query:  681 LRGSAADEDEDD-EVYEYXXXXGEVYGDGEDE-LDRSVVKQLKRSAAVFRRVSWVSWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGVALALGSLACSAASVCWTWGYNLKAKGW--KNLGTLAEVDDAQLRMRNSLKMGLYINVAGMLLALVGAEQIVGTLVAKVLYSQGFQPNVVMGTTGAAEV-AQAQFRALDVFIVQANTNTLLSHFCSLAASLWLLARTPKLARL 1364
            LR + AD+D+++ E YE      E     E E L+ + + +LK  A+ F+R+ W SWW+QTILSTV+ II+LFSNA+T RS RGN LGNGV LA  ++A + AS+ WTW   LKA  W  +N    +   +AQ  +  +LK+G++IN+ G L ALVGAEQIVGTLVAKVLYS G    +  G   A+ + A  QFRALD+FI+QANTNTLLSHF SLA +L LLAR   L  +
Sbjct:   56 LRANQADDDDEEVEYYEEVDDSDEAGELQESEVLENAQLARLKLGASNFQRLGWFSWWSQTILSTVSAIIILFSNAITERSVRGNALGNGVFLAGLAVASAGASMFWTWTLILKATAWVGRNEKKRSTPTEAQRNIIRALKVGVWINLLGALFALVGAEQIVGTLVAKVLYSGG----ITQGQVVASSIPATQQFRALDIFIIQANTNTLLSHFVSLAINLLLLARARTLTMI 284
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1438.3426.1 vs. uniprot
Match: A0A7S2V450_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V450_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.070e-39
Identity = 92/184 (50.00%), Postives = 119/184 (64.67%), Query Frame = 3 
Query:  819 FRRVSWVSWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGVALALGSLACSAASVCWTWGYNLKAKGWKNLGTLAEVDDAQLRMRNSLKMGLYINVAGMLLALVGAEQIVGTLVAKVLYSQGFQPNVVMGTTGAAEVAQAQ----FRALDVFIVQANTNTLLSHFCSLAASLWLLARTPKLA 1358
            F+R++W+SWW Q IL+TVA +IL F+ AVT+   R N L NG  LA   +     S+ WTWG    A+ WK   T  ++D A   M N LK  + IN+ GML+ALVGAEQIVGTLVAK+L +Q  Q        G ++V QA     F+ALD+F+VQANTNT+L+HF SLAASLWL  R  +L+
Sbjct:   88 FQRIAWISWWTQVILTTVAGVILFFTTAVTDPG-RANFLVNGTFLAGCGVTLGLISIFWTWGIARAARRWKRRST--DLDQACASMGNRLKAAVLINLMGMLVALVGAEQIVGTLVAKILQTQTVQQ------FGMSQVIQAGGSGIFQALDIFVVQANTNTILAHFSSLAASLWLQTRFRRLS 262
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1438.3426.1 vs. uniprot
Match: A0A7S3XU47_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU47_HETAK)

HSP 1 Score: 145 bits (366), Expect = 4.400e-35
Identity = 98/247 (39.68%), Postives = 137/247 (55.47%), Query Frame = 3 
Query:  651 KQGSGRGFAFLRGSAADEDEDDEVYEYXXXXGEVYGDGEDELDRSVVKQLKRSAAVFRRVSWVSWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGVALALGSLACSAASVCWTWGYNLKAKGWKNLGTLAEVDDAQLRMRNSLKMGLYINVAGMLLALVGAEQIVGTLVAKVLYSQGFQPNVVMGTTGAAE-----VAQAQFRALDVFIVQANTNTLLSHFCSLAASLWLLARTPKLARLAAKG 1376
            K+GS  GF   +G  A  +E++++Y      G+V    E        K+++  +  F+  +W SWWAQ ILSTVA +IL F++A+T+   R N+  NG  LA   +     S  WTWGY   AK WK  G  A+++  Q  M   L+ G ++N  GM +AL GAEQIVGTLVAKVL +QG  P +     G A      + Q   +ALD+F+VQANTN+++SH C L   L+L  R  +LA     G
Sbjct:   61 KRGS-HGFLAAQGDDALNEEEEKLYS----SGKVVLTPEQ-------KRIRNLSNGFQNAAWTSWWAQVILSTVAGVILFFASAITDP--RVNMFMNGTLLAGCGVFFGLVSTFWTWGYASAAKRWKRPG--ADLEKLQRAMLRRLEFGHFVNTLGMAVALTGAEQIVGTLVAKVLSAQGLSPFLGGAAVGYAAGQPLVLPQGAVQALDIFVVQANTNSVVSHLCGLLTVLYLRGRARRLAAAGDAG 291
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1438.3426.1 vs. uniprot
Match: A0A4D9D048_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D048_9STRA)

HSP 1 Score: 132 bits (333), Expect = 5.930e-31
Identity = 78/200 (39.00%), Postives = 114/200 (57.00%), Query Frame = 3 
Query:  795 QLKRSAAVFRRVSWVSWWAQTILSTVAFIILLFSNAVTNRSARG------NILGNGVALALGSLACSAASVCWTWGYNLKAKGWKNLGTLAEVDDAQLRMRNSLKMGLYINVAGMLLALVGAEQIVGTLVAKVLYSQGFQPNVVMGTTGAAEVAQAQFRALDVFIVQANTNTLLSHFCSLAASLWLLARTPKLARLAAKG 1376
            +L++ +      +W SWWAQ I +TVA +IL F+N+    S  G      +I  NG   A   L   A S+ WTWG+   AK  +    + E   +   +R  ++  + IN+ G+L AL+GAEQ VG L+A+VL  QGF P V+  +     +A    + +D+F++QANTN LLSHF SL +SL LL R  K++R AA+G
Sbjct:   93 ELRQYSKFLHSTAWFSWWAQVICNTVAGVILFFTNSFVAPSGGGPSLAAKSIFSNGYIFAASGLCLGAISIFWTWGFTGVAKRIRR--AVLEPPTSLAMVRRVVRTAIVINLLGLLTALIGAEQFVGNLMARVLSQQGFSPLVINQSAMGGAIASPTVQPVDIFVIQANTNILLSHFISLVSSLLLLLRYSKISR-AARG 289
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1438.3426.1 vs. uniprot
Match: A0A7S1XJJ2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJJ2_9STRA)

HSP 1 Score: 125 bits (314), Expect = 4.350e-29
Identity = 84/189 (44.44%), Postives = 109/189 (57.67%), Query Frame = 3 
Query:  825 RVSWVSWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGVA----LALGSLACSAASVCWTWGYNLKAKGWKNLGTLAEVDDAQLRMRNSLKMGLYINVAGMLLALVGAEQIVGTLVAKVLYSQGFQPNVVMGTTGAAEVAQ-AQFRALDVFIVQANTNTLLSHFCSLAASLWL--LARTPKLARLAA 1370
            R  W SWW QT+L+ +A I LLF+      +     + +G A    LA   ++ SA SV WTWG+   A+  +    L    +A+L +R +L+ G+ +N+ GM   L GAEQIVGTLVAKVL  QG     V G    A VA  A  +ALD+FIVQANTNTLLSH CSL  +LWL    R+ +L  L A
Sbjct:   28 RAGWTSWWIQTVLTVIASITLLFARTFAAAAGGSTAIQSGGAGGLFLAGLGVSLSALSVFWTWGFTRVARRLRKGEDLTPRLEARL-IRRALRTGIVLNLVGMFATLFGAEQIVGTLVAKVLSFQG-----VTGPAAGAYVAPTATLQALDIFIVQANTNTLLSHLCSLTITLWLSWATRSAQLPYLGA 210
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1438.3426.1 vs. uniprot
Match: A0A0M0JU81_9EUKA (Copper uptake transmembrane transporter n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JU81_9EUKA)

HSP 1 Score: 120 bits (301), Expect = 1.090e-27
Identity = 77/171 (45.03%), Postives = 99/171 (57.89%), Query Frame = 3 
Query:  828 VSWVSWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGVALALGSLACSAASVCWTWGYNLKAKGWKNLG--TLAEVDDAQLRMRNSLKMGLYINVAGMLLALVGAEQIVGTLVAKVLYSQGFQPNVVMGTTGAAEVAQAQFRALDVFIVQANTNTLLSHFCSLAASLWL 1334
            + WVSWW+Q ILST++ ++LLF+N VT R     ILG   AL LG L  + AS  WT  Y   A+    LG  T    +DA  R  N   +G ++N+ GM+L L+GAE IVGTL AK L S         GT        +  +ALD+ IVQANTNTLL+HF SL A++ L
Sbjct:   20 IGWVSWWSQAILSTISAVLLLFANTVTVRPTALTILGR--ALTLGGLVAAIASTLWTVAYGRLAR---RLGRATPPTAEDAAERAANIATVGTWLNIVGMVLCLLGAEAIVGTLAAKALQSTS-------GTAITGSFIPSPVQALDLLIVQANTNTLLAHFISLCANMRL 178
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1438.3426.1 vs. uniprot
Match: A0A7S2IJ58_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IJ58_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.060e-25
Identity = 73/179 (40.78%), Postives = 102/179 (56.98%), Query Frame = 3 
Query:  798 LKRSAAVFRRVSWVSWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGVALALGSLACSAASVCWTWGYNLKAKGWKNLGTLAEVDDAQLRMRNSLKMGLYINVAGMLLALVGAEQIVGTLVAKVLYSQGFQPNVVMGTTGAAEVAQAQFRALDVFIVQANTNTLLSHFCSLAASLWL 1334
            ++ +A   RR+SW SWW Q IL+TV+ I LLF+  V N    G  LG G+ LA   +  S  S+ WTWG    A+          +  A +  R ++ + + IN+ GM + ++GAEQIVG+L A++L + G  P     +  AA+  Q     LDV +VQANTNTLLSHF SLA +L L
Sbjct:  127 IRETALGLRRLSWFSWWCQVILTTVSSITLLFAKNVRNSGGTGGGLG-GLFLAASGITLSILSIFWTWGGARLARRLVRRAQTTRISAANMT-RRAVSIAVAINLIGMFVTILGAEQIVGSLAARILSTSGLSPFAPPSSQMAAQTIQP----LDVLVVQANTNTLLSHFVSLACALSL 299
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1438.3426.1 vs. uniprot
Match: A0A7S0GKD1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GKD1_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.520e-25
Identity = 74/183 (40.44%), Postives = 97/183 (53.01%), Query Frame = 3 
Query:  807 SAAVFRRVSWVSWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGVALALGSLACSAASVCWTWGYNLKAKGWKNLGTLAEVDDAQLRMRNSLKMGLYINVAGMLLALVGAEQIVGTLVAKVLYSQGFQPNVVMGTTGAAEVAQAQFRALDVFIVQANTNTLLSHFCSLAASLWLLARTPKL 1355
            ++   R+ SW SWW Q ILSTV+ + LLF+ +V      G   G    LA   +  S  SV WTWG    +K      +   +  A L  RN + +GL +N+ GM L L+GAEQIVG L AKVL  QG       G+   A  +    + LD+ IVQANTNTLLSHF S+   L+L     +L
Sbjct:   24 TSQALRKCSWFSWWTQVILSTVSGVTLLFARSVLMSGIEGKKRGAEFILAGSGIVLSIISVFWTWGGARISKRLMRRPSTTRIKAANLLRRN-ISVGLTLNLLGMFLTLLGAEQIVGMLAAKVLTQQGAFSG---GSAVLAGASVQSVQPLDILIVQANTNTLLSHFVSVVCGLYLTRFVDRL 202
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1438.3426.1 vs. uniprot
Match: A0A7S4C3B6_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C3B6_CHRCT)

HSP 1 Score: 115 bits (289), Expect = 2.980e-25
Identity = 76/184 (41.30%), Postives = 107/184 (58.15%), Query Frame = 3 
Query:  834 WVSWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGVALALGSLACSAASVCWTWGYN-LKAKGWKNLGTLAEVDDAQLRMRNSLKMGLYINVAGMLLALVGAEQIVGTLVAKVLYSQGFQPNVVMGTTGAAEVAQAQFRALDVFIVQANTNTLLSHFCSLAASLWLLARTPKLARLAAKGRS 1382
            W+SWW+QTILS +A +IL+F+N V+   A   ++G  V LA+ +L  SA S  WTW Y  + A+  + + T A   DA  R   +L +G+ IN+ G+ L+++GAE IVG L AK L   G      +   GAA    A  +A+D+ IVQANTNT+ SHF SL A++    R  K A   A  +S
Sbjct:  102 WISWWSQTILSVIAAVILIFANTVSQIPASAPVIGGRV-LAVSALGASAVSNFWTWSYTRISARFGRKMPTPA---DASSRATGALAVGIAINLVGIALSILGAEAIVGILAAKTLTQSG------VALAGAA----APVQAIDMLIVQANTNTMASHFISLCAAM----RMQKAASTCATSKS 267
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1438.3426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJB7_9PHAE2.190e-14272.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CL61_9STRA7.930e-5251.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V450_9STRA2.070e-3950.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3XU47_HETAK4.400e-3539.68Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A4D9D048_9STRA5.930e-3139.00Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A7S1XJJ2_9STRA4.350e-2944.44Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A0M0JU81_9EUKA1.090e-2745.03Copper uptake transmembrane transporter n=1 Tax=Ch... [more]
A0A7S2IJ58_9STRA1.060e-2540.78Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S0GKD1_9STRA2.520e-2540.44Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S4C3B6_CHRCT2.980e-2541.30Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1438contigH-canaliculatus_F_contig1438:852..7080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue1.9e-23
Seed eggNOG ortholog2850.Phatr49226
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006605,GO:0006810,GO:0006873,GO:0006875,GO:0006886,GO:0008104,GO:0008150,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009706,GO:0009941,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0017038,GO:0019725,GO:0019866,GO:0030003,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0033036,GO:0033365,GO:0034613,GO:0042170,GO:0042592,GO:0042802,GO:0042803,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045036,GO:0045037,GO:0045184,GO:0046907,GO:0046983,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055065,GO:0055080,GO:0055082,GO:0055085,GO:0065002,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0072594,GO:0072596,GO:0072598,GO:0098771
EggNOG free text desc.Protein of unknown function (DUF3611)
EggNOG OGs28KUA@1,2QTAI@2759,2XGTY@2836
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionChloroplast inner membrane protein TIC 21
Ec32 orthologEc-12_006410.1
Exons5
Model size1930
Cds size1203
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929192.182337-UTR-H-canaliculatus_F_contig1438:851..13961622929192.182337-UTR-H-canaliculatus_F_contig1438:851..1396Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1438 852..1396 -
1696845711.5819972-UTR-H-canaliculatus_F_contig1438:851..13961696845711.5819972-UTR-H-canaliculatus_F_contig1438:851..1396Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1438 852..1396 -
1622929192.291821-UTR-H-canaliculatus_F_contig1438:6898..70801622929192.291821-UTR-H-canaliculatus_F_contig1438:6898..7080Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1438 6899..7080 -
1696845711.645563-UTR-H-canaliculatus_F_contig1438:6898..70801696845711.645563-UTR-H-canaliculatus_F_contig1438:6898..7080Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1438 6899..7080 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929192.2104158-CDS-H-canaliculatus_F_contig1438:1396..15931622929192.2104158-CDS-H-canaliculatus_F_contig1438:1396..1593Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1438 1397..1593 -
1696845711.59259-CDS-H-canaliculatus_F_contig1438:1396..15931696845711.59259-CDS-H-canaliculatus_F_contig1438:1396..1593Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1438 1397..1593 -
1622929192.2246373-CDS-H-canaliculatus_F_contig1438:2666..28601622929192.2246373-CDS-H-canaliculatus_F_contig1438:2666..2860Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1438 2667..2860 -
1696845711.6009438-CDS-H-canaliculatus_F_contig1438:2666..28601696845711.6009438-CDS-H-canaliculatus_F_contig1438:2666..2860Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1438 2667..2860 -
1622929192.2364473-CDS-H-canaliculatus_F_contig1438:3680..38471622929192.2364473-CDS-H-canaliculatus_F_contig1438:3680..3847Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1438 3681..3847 -
1696845711.6106732-CDS-H-canaliculatus_F_contig1438:3680..38471696845711.6106732-CDS-H-canaliculatus_F_contig1438:3680..3847Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1438 3681..3847 -
1622929192.2563567-CDS-H-canaliculatus_F_contig1438:4064..41101622929192.2563567-CDS-H-canaliculatus_F_contig1438:4064..4110Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1438 4065..4110 -
1696845711.6238654-CDS-H-canaliculatus_F_contig1438:4064..41101696845711.6238654-CDS-H-canaliculatus_F_contig1438:4064..4110Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1438 4065..4110 -
1622929192.276855-CDS-H-canaliculatus_F_contig1438:6299..68981622929192.276855-CDS-H-canaliculatus_F_contig1438:6299..6898Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1438 6300..6898 -
1696845711.6333466-CDS-H-canaliculatus_F_contig1438:6299..68981696845711.6333466-CDS-H-canaliculatus_F_contig1438:6299..6898Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1438 6300..6898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1438.3426.1prot_H-canaliculatus_F_contig1438.3426.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1438 1397..6898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1438.3426.1

>prot_H-canaliculatus_F_contig1438.3426.1 ID=prot_H-canaliculatus_F_contig1438.3426.1|Name=mRNA_H-canaliculatus_F_contig1438.3426.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=401bp
MSRNLTCPLALSQSTVAGWLHTCLLRSPQVYIPSFELGSRITKISVEAVC
FLSPRRRTDRQEQRHYLQRIIMRAPQTAVAALSLTLGTVAGFISTTPTTG
GCHGSSLFRPDPRGARTVTSGPSRNSATTAPAATFMSLKPSPRQRFIPPW
RRPAATKQGSGRGFAFLRGSAADEDEDDEVYEYEDDDGEVYGDGEDELDR
SVVKQLKRSAAVFRRVSWVSWWAQTILSTVAFIILLFSNAVTNRSARGNI
LGNGVALALGSLACSAASVCWTWGYNLKAKGWKNLGTLAEVDDAQLRMRN
SLKMGLYINVAGMLLALVGAEQIVGTLVAKVLYSQGFQPNVVMGTTGAAE
VAQAQFRALDVFIVQANTNTLLSHFCSLAASLWLLARTPKLARLAAKGRS
*
back to top

mRNA from alignment at H-canaliculatus_F_contig1438:852..7080-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1438.3426.1 ID=mRNA_H-canaliculatus_F_contig1438.3426.1|Name=mRNA_H-canaliculatus_F_contig1438.3426.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6229bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1438:852..7080- (Hapterophycus canaliculatus Oshoro5f female)
AGCTGAACCTTTGGATTACTACCAAGCTCACCCCGTCATCATCGTCCCCG
AAGTCCATCGCAACATCATCAAAGCTGGGCATCCTTTGATTGGTGGCTGC
TAGTGCGACCTTGCTGTGTGCTTTTGGTGGGCCCAATGGTGGGGGTTCCG
TTTATTATATTTCGGGGTGAGGGGAGATTTTCATGAGCCGCAATCTGACG
TGCCCCTTGGCCTTGTCTCAATCTACCGTTGCCGGTTGGTTGCACACTTG
TCTACTGAGAAGCCCACAAGTGTATATCCCATCCTTCGAGCTCGGTAGTC
GCATTACGAAAATTTCAGTGGAGGCTGTGTGCTTCCTCTCTCCACGCCGA
CGAACGGACAGGCAAGAGCAACGACATTACTTGCAACGCATTATAATGAG
AGCGCCTCAAACAGCAGTTGCCGCCCTTTCTCTCACGCTAGGGACTGTCG
CCGGGTTCATCTCTACCACGCCGACTACCGGTGGATGCCATGGCTCTTCT
CTCTTTCGACCTGATCCAAGAGGTGCGCGGACGGTGACGTCGGGACCCTC
TCGCAACAGTGCGACGACGGCACCAGCAGCGACGTTCATGTCGCTCAAAC
CATCTCCAAGACAGCGGTTCATTCCGCCATGGCGGCGACCGGCGGCGACG
AAGCAAGGTTCCGGGAGAGGTTTCGCGTTCCTCCGGGGCTCGGCGGCGGA
TGAGGACGAGGACGACGAAGTATATGAATACGAGGATGACGACGGGGAGG
TGTACGGCGATGGTGAAGATGAACTGGATAGGTGTGTGATACATGGCCCG
AAGGATGCATGGGAGATCGATCCAACATTGGCTTCTTCTCTGCGGAAAAT
GCGACTAATCTTGTCTATCTTCCAGACAGCAGAACCTCTTACGAAGTACA
TTATATCATACAGCAGCAGTGGGCAGTAGTGGGGGCCAATAACAGCATTT
CCCACGGTCTTTCAGCAAAGCTCTCGCTTGTGCCCTTTATCCCCATGATG
TAACTGAGCGTAGCCGTAGAAATGAAAGATAAGAGGGTGTTCCTACACTG
CTGTCATTGTTGTCATACAGGTACTTCTGTAAAGGGAAGGGCATGATCGC
ATTAACGAGTTTCGGATCCGCGCTCGAGTTTTCCAGATTTAAGCACTCAT
ATTTAGAGATCAGGCGGCTTCCGAGAAAGTTCCCACAGACAAATAGTCTC
ACATTCAAGGGAACCTTGACGTCAGCATCCGCAGTTCATATGATTGGTCC
AAAGTCGAACGGTGTGACCTCCACACTCTTTTTTGAGATGCCCCTCTTTG
GCAATTCAACAGCAGCAGCAGCGCTGTGAGGCATAATCTCACACACACAG
CCTCACACTTCGTACCGCGGGTTAGGCAAGCATGCCCCTCTTGCTTACTC
GCGATGGAATAGCGCAAAAACGCAAGGGCTGAGGGTTTTTTCAGCGGCCA
TCGTCGTTTCCCGTGTTTAGGTCCTGTCCGCGAATCGTATGCACACAACC
TGAGAAGCGAGTTCAGGGGCACCGTAGGTAACACAGCGATCAGCCAGACG
CCCGACCGACAGCGTCGACAGCGCGAACAGGCCAAGGAGGCTCAGTATCT
TGATCCGCCATCACTTCTTCTGTGTCGCGGCTGGGTTATGTTAGGTTTGT
CGTGCTGCAACATGGCCGTCGCCATGTCGCCATGATCAACAGCATCAGAC
TCCTTGCTACGCTTGATCTCTCCATTTACCTTTCGCCCTCATGCAAACAC
CTCTTCGGCTTCACCTCCGTGACCTTGCGTGAGCCTCCAGGGCCTCGAAG
GTGATGGTCAGGGCTCTCATGCTCATCCGTCCCTGTATGTTCGGTCACAG
CCTTGACAAACTCGGGGCTAGTTGCATCCTGCACGCGCAAAACGCGAAAT
CTGAATCACATCTGAAACTACCAGATTCAACAGCCCTCGCGAGCGCTTAT
CTCTAAATATGAGCCGCCCTAAACCTGGAAATGGCGGGACTGTCAGGACC
GTTCCGCGAAACGGCGGCTGAAAACTAAACATGAGTCCTTAAATATGGAA
AATCTGCATCAGAATCTCTCTATTTGTCCTATCTCCTTTTCCAAATAGTG
CAACTTTCGGATCCACCATCTTTCGTCTACGACTACTGTAGTTGAATATT
TCGATGCACGTTCGCCAAACAACTTAACGTCGCATTCGGGAGGAAGAACA
TGCCGGACACCTCTCTGCCTTATGCCCCAGTCTAGCACAAGGTTCAAGTT
TCCACCAATTTGCCCGGAGCTTTTCGCTCGTCACCTTACAGCATTGCTCA
CTCCCACGCGTGCTTCACAGAAACAAGGCGGAGCGAAATTGCAGTGGTTT
GGGGGACAGCTTGTGTTGCCTCGTCGAAGGAAGACGCGTATTCTTCCTGC
ACTTCTTTCACGGCTTCACCCACCGCAGCTGTTTCCGTTGACCCACCGGT
CCTGCCAGCAAGAGCCGTTTCCTCGAGCAAAGAAGCCTTCCGACTTCACA
TCGGTAGCGTTTTCTTTGGCCGGAAGATGCCCAGATTCCCTCACGTTCTA
GCCATCAAGTTCACCGATGTCGGCTTATCCGCAGATTGTTTGATGCGAGG
TATACGCCGAATGTTTCGCTCCGACAATCGTCCCGGATGGTGGGTCACGC
TCTCCCTCAGACCTCGAGTGCTCGATACGTCAAGAATCGTTCTCATTGTG
CCTGCGTGAGCCGAAACGGGCCCCTGCAAGCGTGGAGGGTCTCTCTCAGA
AACGAAAAAGGTTGAGCTCGTCTTGCGTGGTGTGATTCGAACAGCAACGC
AGGGCGAACAACTCGTGCTGCCGTCGTATGTACCGCTGCAAACCGCTTTA
CGCCGTCGGCCCTTTCGAACGGCGTACGTTACGCGAGAGTATACCGCTCG
CCTGACCAAATCCTCCGAGCTTTCCGTCTCACTAGCGCCGCCCCGTGCTC
TGCCCGCTTTCTCGCTCAAGGTCTGTCGTCAAGCAGCTGAAGCGCAGCGC
AGCGGTGTTCCGGCGGGTGCGTGGGGTGATGGGGCCGGTCGGGGTTTACG
GTAGGAGTCGCTTACGTTTATCATCGCACAGGTGGTTGCAGGAATATCAA
CATCGCTCGCCCGGCATGCCACCATCTCTCGAACACGCGCCCACACCCCG
CAGGCCCCCACCCGCCGCTTTCAAAGCGCCAGCTTAGCGCTCCATCAACC
CACCGCACCGCGATGATGCTCGCGGTCACGCAGGTCAGCTGGGTTTCGTG
GTGGGCCCAAACGATCCTGTCGACCGTGGCGTTCATCATCCTGCTCTTCT
CCAACGCGGTCACCAACCGCTCCGCCCGCGGCAACATCCTCGGGAACGGC
GTGGCTCTGGCCTTGGGGAGTCTGGCTTGCTCAGCCGCGAGCGTATGCTG
GTGAGTCGGCCACTCGCTCGGAGGGACGGGGGTGTTTTGCACCATGGGTG
TCTGGTAGATTTTTGTACTGCTTTGCGGCGACGGGAACGCGAAGGTTGCC
ATCGTCGCTTGTACGATGCCTGGCGAGAGAAACGCGTGGGAACATCCGCT
CGAGCGCCCGCGGAGGTGCACCCCTCAGCTCCGAACCTCAACTCGACGTA
CGTCTGCAAGTAGAAAAAGCTCGAGGTTTCATGCGTTTGATTCTAAAATG
GCTTCTTCACGAGCTCCTTGTGCGATCGCTGAACCGTCCACCGTGGTAGT
TGGCCCGTTGTTGTTGCCTTGGGCTGCTGCCGAGGGCTTGAGAATTCCCA
CGCTTCTACGCGCCGAAGGGTCAAACAGAGGGAAGGCAGGGAGGAACACT
AACCGTCCCTGGCGGATGTCTCGTGACTTACGTCCGACAGGATTAATGTG
CTTAACTCGCACCATCGTCGCAAGGATGACAGTAGGAGGCGGAACGAGGA
ACGCTGTAGCTTGATCATGCCGCGGTTGTCACCTTTTCGCTCTCGACCGC
TCTTCCTGTAAAATATGGCTCCTCGCGGCACTTTCGTCGCACTTTGCGCA
GCGCGTGCGTGCATTTCTGCGTGGCCGGCGAACACCCGACAGCGTGCCCA
GAAGGTTCACGCTCCATCCGTCTTGACCGTCTCGAGTTGAAAAGCGGTTA
CTCGGATCCTCGTCCCATTTATCGAATACGAACGGCTGAACCGTAAATTG
CTGGACAAGCTCGTGATTCTCTCCCGCGCATCATTTTCCGTTGCACAAAC
GCACACAAACACACTTCCAGGACCTGGGGGTACAATCTGAAGGCAAAAGG
CTGGAAAAATCTGGGGACTCTGGCAGAGGTGGATGACGCGCAGCTGCGGA
TGCGAAACTCGCTGAAAATGGGGCTGTACATCAACGTTGCGGGCATGCTC
CTGGCTCTGGTCGGGGCGGAACAGATCGTGGGCACGCTGGTTGCCAAAGT
TTTATATTCCCAAGGTGAGGAGAGGAAGGGGGAAAGGGCGCCGGGAGGAA
GGAAGGGAGGATGAAACCAGGATGAAGAAGGCACTGACACAAAGCGGTGT
GTGTTTTGCGGTTTGAGGCGTTCACGTTGGCTTTTGTTGTGTTGGCGACG
GGCAAATCGGGCGACGGCGTCTTGTGGTAAATGTCGTGGAACAGAATAAA
TGATGGCTTGGTGACTGCTCTTTGATCACCAGTTTGCGTTTCGTCACATC
TGTGTTCGATGGACGAGCTCAAAGTAGGCGGTTTGTTCACGACGGATCCG
AGACACCTGGATCGCGTTTTGCGGGACGTCGGCGGGCGTTAATGCGCGTG
TGTGTGGCAACGCGAAGCGCGCGCCTCGTTCTCGTGCTTTGCGTAGAATG
ACACCACATTTCCTAAGATTCGAGAGTTAGGGGCTTTCGGAATGGATCCG
TGACGTAAAAATTCAAATTCGGCGAATTTATCCCATCCTAAAACCACGAC
AAGAGCGACCCTCTTGCTTGCCAACAGGATCGGCCGTGAGGGTTGGGTGA
GGGAGTCTTGTCGCTAGTCGGGAAAGTATACTACTGTACTGGCTTTTTGT
CGTCGCTTCTTCACGAGGAGGCCTAGCGCTGTTTGGTGCTGGAAACGACC
TTTACAGCGGCGCATGTATCGTCGGAGCTTCATGTGTAAACTCGAAAGCT
AAATCCCCTATTTCATAACGGGTTCTTGTGTTGTCCGTTCCTTTCCAAAT
CCACTTGCATCCCGTATGCGTGAGCTATAGCGTTGTGGTCTAGGGATGCG
GGGTAAGATCGGGTGTGCCAATCGAACCTTGCTTTCACGCACAAGTTGTC
ACGAGCTCCCTTCTGTGCACCTCGCCACCAGGCTTCTGTGTTGCTGGTGA
ACCGTTGAAACGAACGACGCAGACCTCTTTCGCTTACCGGCGAAGTGGAC
ATTGGCCGCCGTCTGTTCTAGTGCATAGCACGGACTTCGAAGGCCACGTT
TAACGCAGTCGCTACCGCAATCTCCAAAGCGTCACTCCCGAGAGATTTTA
CCGCTACCTTTCCATCGCTCATGCACTCGTCTGCCAGGTTTCCAGCCGAA
CGTGGTGATGGGGACCACGGGGGCCGCGGAGGTGGCCCAGGCGCAGTTCC
GCGCCCTCGACGTTTTCATCGTGCAGGCGAACACCAACACCTTGCTCAGC
CATTTCTGCTCGTTGGCGGCATCTCTGTGGCTACTCGCGAGGACGCCAAA
GCTCGCGAGATTGGCGGCGAAAGGCCGATCCTAGTGATTTTTCTGCCACT
CCTCGTGCGGATACTTGTTCGTTGGAACACTGCTGAATCGTCTTTCTCTT
CCTACTGTGCCGGTTCGCTTGTGCTCGAAGGCGGGGTGGTAATGAAATCC
CATGGTGCCGCGCTCTGTTGCCGGCTCCATGAAGCCTTGTTTCATGACTT
TACATTTGGCACGGATGAAATTGCCACCTGGGGAGGAGGGCAGCTGGTTC
GTTCCGCTGAATGAGCGCAACCGAATCGTTATATCTTCCCATACACTTCA
GTCTGGTCGTGTGCCTCGTCGACCGGCAAGATGTCGATGTTCAGTGGTGT
GGCACGCAAAGCAAGAGTCAACTCTAGTTTGTCGTGTTGGCTCTATAGCC
GACGCCACGAACTGTATTTTGGTCGTAGGTCAAGGGCGAAGTCAAGGACA
ACAACACTTTTACCCCGACCAACGTTTCTTCTCTTACAAGTACTGCAGAT
GAGAGTTTCCGAAGCTTCCACATCCAAAGCAACTACAATTGTAGGTGCCA
ATAATTTTGAATGTTCAAGAGGATCGAGC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1438:852..7080-

>mRNA_H-canaliculatus_F_contig1438.3426.1 ID=mRNA_H-canaliculatus_F_contig1438.3426.1|Name=mRNA_H-canaliculatus_F_contig1438.3426.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2406bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1438:852..7080- (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCCGCAATCTGACGTGCCCCTTGGCCTTGTCTCAATCTACCGTTGC
CGGTTGGTTGCACACTTGTCTACTGAGAAGCCCACAAGTGTATATCCCAT
CCTTCGAGCTCGGTAGTCGCATTACGAAAATTTCAGTGGAGGCTGTGTGC
TTCCTCTCTCCACGCCGACGAACGGACAGGCAAGAGCAACGACATTACTT
GCAACGCATTATAATGAGAGCGCCTCAAACAGCAGTTGCCGCCCTTTCTC
TCACGCTAGGGACTGTCGCCGGGTTCATCTCTACCACGCCGACTACCGGT
GGATGCCATGGCTCTTCTCTCTTTCGACCTGATCCAAGAGGTGCGCGGAC
GGTGACGTCGGGACCCTCTCGCAACAGTGCGACGACGGCACCAGCAGCGA
CGTTCATGTCGCTCAAACCATCTCCAAGACAGCGGTTCATTCCGCCATGG
CGGCGACCGGCGGCGACGAAGCAAGGTTCCGGGAGAGGTTTCGCGTTCCT
CCGGGGCTCGGCGGCGGATGAGGACGAGGACGACGAAGTATATGAATACG
AGGATGACGACGGGGAGGTGTACGGCGATGGTGAAGATGAACTGGATAGA
TGAGCCGCAATCTGACGTGCCCCTTGGCCTTGTCTCAATCTACCGTTGCC
GGTTGGTTGCACACTTGTCTACTGAGAAGCCCACAAGTGTATATCCCATC
CTTCGAGCTCGGTAGTCGCATTACGAAAATTTCAGTGGAGGCTGTGTGCT
TCCTCTCTCCACGCCGACGAACGGACAGGCAAGAGCAACGACATTACTTG
CAACGCATTATAATGAGAGCGCCTCAAACAGCAGTTGCCGCCCTTTCTCT
CACGCTAGGGACTGTCGCCGGGTTCATCTCTACCACGCCGACTACCGGTG
GATGCCATGGCTCTTCTCTCTTTCGACCTGATCCAAGAGGTGCGCGGACG
GTGACGTCGGGACCCTCTCGCAACAGTGCGACGACGGCACCAGCAGCGAC
GTTCATGTCGCTCAAACCATCTCCAAGACAGCGGTTCATTCCGCCATGGC
GGCGACCGGCGGCGACGAAGCAAGGTTCCGGGAGAGGTTTCGCGTTCCTC
CGGGGCTCGGCGGCGGATGAGGACGAGGACGACGAAGTATATGAATACGA
GGATGACGACGGGGAGGTGTACGGCGATGGTGAAGATGAACTGGATAGGT
CTGTCGTCAAGCAGCTGAAGCGCAGCGCAGCGGTGTTCCGGCGGGTCTGT
CGTCAAGCAGCTGAAGCGCAGCGCAGCGGTGTTCCGGCGGGTCAGCTGGG
TTTCGTGGTGGGCCCAAACGATCCTGTCGACCGTGGCGTTCATCATCCTG
CTCTTCTCCAACGCGGTCACCAACCGCTCCGCCCGCGGCAACATCCTCGG
GAACGGCGTGGCTCTGGCCTTGGGGAGTCTGGCTTGCTCAGCCGCGAGCG
TATGCTGGTCAGCTGGGTTTCGTGGTGGGCCCAAACGATCCTGTCGACCG
TGGCGTTCATCATCCTGCTCTTCTCCAACGCGGTCACCAACCGCTCCGCC
CGCGGCAACATCCTCGGGAACGGCGTGGCTCTGGCCTTGGGGAGTCTGGC
TTGCTCAGCCGCGAGCGTATGCTGGACCTGGGGGTACAATCTGAAGGCAA
AAGGCTGGAAAAATCTGGGGACTCTGGCAGAGGTGGATGACGCGCAGCTG
CGGATGCGAAACTCGCTGAAAATGGGGCTGTACATCAACGTTGCGGGCAT
GCTCCTGGCTCTGGTCGGGGCGGAACAGATCGTGGGCACGCTGGTTGCCA
AAGTTTTATATTCCCAAGGACCTGGGGGTACAATCTGAAGGCAAAAGGCT
GGAAAAATCTGGGGACTCTGGCAGAGGTGGATGACGCGCAGCTGCGGATG
CGAAACTCGCTGAAAATGGGGCTGTACATCAACGTTGCGGGCATGCTCCT
GGCTCTGGTCGGGGCGGAACAGATCGTGGGCACGCTGGTTGCCAAAGTTT
TATATTCCCAAGGTTTCCAGCCGAACGTGGTGATGGGGACCACGGGGGCC
GCGGAGGTGGCCCAGGCGCAGTTCCGCGCCCTCGACGTTTTCATCGTGCA
GGCGAACACCAACACCTTGCTCAGCCATTTCTGCTCGTTGGCGGCATCTC
TGTGGCTACTCGCGAGGACGCCAAAGCTCGCGAGATTGGCGGCGAAAGGC
CGATCCTAGGTTTCCAGCCGAACGTGGTGATGGGGACCACGGGGGCCGCG
GAGGTGGCCCAGGCGCAGTTCCGCGCCCTCGACGTTTTCATCGTGCAGGC
GAACACCAACACCTTGCTCAGCCATTTCTGCTCGTTGGCGGCATCTCTGT
GGCTACTCGCGAGGACGCCAAAGCTCGCGAGATTGGCGGCGAAAGGCCGA
TCCTAG
back to top