mRNA_H-canaliculatus_F_contig14379.3425.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14379.3425.1
Unique NamemRNA_H-canaliculatus_F_contig14379.3425.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14379.3425.1 vs. uniprot
Match: D8LBX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX6_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 2.180e-55
Identity = 96/108 (88.89%), Postives = 101/108 (93.52%), Query Frame = 1 
Query:    1 KMYTEEAASIMRRLSRIFVNLMKRYVVGEIVLQDMSIQLSAGVWRDLTSSFFQWEGAAAVRELLPEHGVEFRFDVSLTADEMGCTAGSRTALEIVTALTKKTTLQLGR 324
            +MYTEEAASIMRRLSRIFVNLMKRYV+GEIVLQDMSIQLSA VWRDLTSSFFQWEGA+ VRELLP  GVEFRFDVSLTA EMGC +GSRTALEIVTALTK+T LQLGR
Sbjct:   56 QMYTEEAASIMRRLSRIFVNLMKRYVLGEIVLQDMSIQLSAAVWRDLTSSFFQWEGASVVRELLPARGVEFRFDVSLTASEMGCASGSRTALEIVTALTKRTMLQLGR 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14379.3425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBX6_ECTSI2.180e-5588.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14379contigH-canaliculatus_F_contig14379:205..1839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_003650.1
Hectar predicted targeting categoryother localisation
Exons3
Model size327
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14379.3425.1prot_H-canaliculatus_F_contig14379.3425.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14379 208..1839 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929192.086851-UTR-H-canaliculatus_F_contig14379:204..2071622929192.086851-UTR-H-canaliculatus_F_contig14379:204..207Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14379 205..207 +
1696845711.5416658-UTR-H-canaliculatus_F_contig14379:204..2071696845711.5416658-UTR-H-canaliculatus_F_contig14379:204..207Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14379 205..207 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929192.09933-CDS-H-canaliculatus_F_contig14379:207..2731622929192.09933-CDS-H-canaliculatus_F_contig14379:207..273Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14379 208..273 +
1696845711.55171-CDS-H-canaliculatus_F_contig14379:207..2731696845711.55171-CDS-H-canaliculatus_F_contig14379:207..273Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14379 208..273 +
1622929192.1254497-CDS-H-canaliculatus_F_contig14379:1034..11541622929192.1254497-CDS-H-canaliculatus_F_contig14379:1034..1154Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14379 1035..1154 +
1696845711.562275-CDS-H-canaliculatus_F_contig14379:1034..11541696845711.562275-CDS-H-canaliculatus_F_contig14379:1034..1154Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14379 1035..1154 +
1622929192.1399946-CDS-H-canaliculatus_F_contig14379:1701..18391622929192.1399946-CDS-H-canaliculatus_F_contig14379:1701..1839Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14379 1702..1839 +
1696845711.5720098-CDS-H-canaliculatus_F_contig14379:1701..18391696845711.5720098-CDS-H-canaliculatus_F_contig14379:1701..1839Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14379 1702..1839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14379.3425.1

>prot_H-canaliculatus_F_contig14379.3425.1 ID=prot_H-canaliculatus_F_contig14379.3425.1|Name=mRNA_H-canaliculatus_F_contig14379.3425.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=108bp
MYTEEAASIMRRLSRIFVNLMKRYVVGEIVLQDMSIQLSAGVWRDLTSSF
FQWEGAAAVRELLPEHGVEFRFDVSLTADEMGCTAGSRTALEIVTALTKK
TTLQLGR*
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mRNA from alignment at H-canaliculatus_F_contig14379:205..1839+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14379.3425.1 ID=mRNA_H-canaliculatus_F_contig14379.3425.1|Name=mRNA_H-canaliculatus_F_contig14379.3425.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1635bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14379:205..1839+ (Hapterophycus canaliculatus Oshoro5f female)
AAGATGTACACCGAGGAAGCGGCGAGCATAATGCGCCGCCTGTCGAGAAT
CTTCGTCAACCTCATGAAGGTGAGGATGGAGGGTAGGGCCAACGGTGAGT
AGATTGGCATTGATCAAGCGGATTTCGCAATAAGCAAGCAACACGGAGGG
TAGCGGGTAAAGTGCCCCGGTTTGGTTGATGATTTTTTTTACGTTGGTCG
ATGTGAAGGTGGCGACAGACACGCAAGGTCAACCGTGAGGTGTATCGCCC
TGTCGGTCTGCGGCTTTTTTGTGCTTCGACAAAGGTACGGGTTGTGGAAG
GTTGGCATGCATGGGGCAGCGGTGCTTGTTGGGTGGATTGGATTGCTGGA
CGCCAGCGGTAGCATCGAGGTCGTCTGCGTCGCTGGTGGAGCTATTTGCT
GTGCTTTGCGGTAGTCAGCGACGGATGCTACCCATTTTCGAAAGACGTAG
ATTGTGAACGAACTATTTTGTGTCCAGCGTGCTGCGCTGGTCTGCGTCGC
TCGCTCACTTTGAACCTTGGTGGCTGCCACGCCTATCACAGCAGCAGTCG
CTCGGGCCGCCCGTGTAAAAGCGCTTGCTTTTCAGGTCGGTGCGAGGCAC
GCTGCGCTGGGGGCTCCACGATTGTAAGGCAACGGCTGATTGGACGGTGT
GAGTCGTTCCGTGTGCTTTTTGTCTCGTCGCCCCCATCCCCAACCCTACC
AACACACCCTCCTACTCTCCCGCGATCCCACCCCACCTCCGACGCGTTGA
TTTTAACTTGACGACCCTTTCTGAACCGCGCCAACCACCTCTCCCCCCTA
ACATGCAACGAATCGACGTCCCTTCTAAAGCGGTATGTGGTTGGGGAGAT
CGTGCTCCAGGACATGTCTATCCAGCTGTCGGCCGGAGTCTGGAGAGACC
TCACGTCTTCGTTCTTTCAGTGGGAAGGGGCTGCGGCCGTCCGCGAGTTG
GTGAGTGAGAAAAAGCGAACGCTGACGCATGCGGGGGAGGGGGGGGGGGC
GCAAGGCGGAGTCGTAAAAACGTCTAGGGGAGGGGATGGGCAGGGGGCAG
CCGGAGACGCAGGAGGAGGCGTGAAGGAGCGAGGAGGAGCGGAGAAGAGC
GGGGACGGAAAGCGGAGTCATAAGGAGGGGGGTTACGGAGGGAGCGAAGT
GAACGTAGAGAGGCCAGAGGGGCTACAGAAGGCGGGCACCGAACAAGGGC
AGCGGGAGCTGCTGGAGAAGGCGGACTACGGCGTGGAATCCTTTCGAGAA
GGGTTTCACTTATTTCCTCCTGGTAGCTGATCAGTGCGTGGCACAGTGTC
TCCTCCCGCTCCCCTAGTCATTTCCGGCGTGCGTGCTGCAATCTCCTGAA
TGCTGCCCCTGCCCCGCCGCGGTCTCACGTTCACGCCGAAAAAAATGCCG
GGAAAACACCCACACGCGCGCGCGACCGAACATGTGTGTTGTGCATCGGG
TGATGGCGCAACGGCGGTGAAAATGGATGCCTGTCGAATCACACCAGCTC
CCCGAGCATGGAGTGGAGTTCCGGTTCGACGTTTCTCTCACTGCCGACGA
GATGGGGTGCACTGCGGGTTCCAGGACGGCGCTCGAGATCGTTACCGCCC
TCACGAAGAAAACCACGCTCCAGCTTGGTCGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14379:205..1839+

>mRNA_H-canaliculatus_F_contig14379.3425.1 ID=mRNA_H-canaliculatus_F_contig14379.3425.1|Name=mRNA_H-canaliculatus_F_contig14379.3425.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=648bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14379:205..1839+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTACACCGAGGAAGCGGCGAGCATAATGCGCCGCCTGTCGAGAATCTT
CGTCAACCTCATGAAGATGTACACCGAGGAAGCGGCGAGCATAATGCGCC
GCCTGTCGAGAATCTTCGTCAACCTCATGAAGCGGTATGTGGTTGGGGAG
ATCGTGCTCCAGGACATGTCTATCCAGCTGTCGGCCGGAGTCTGGAGAGA
CCTCACGTCTTCGTTCTTTCAGTGGGAAGGGGCTGCGGCCGTCCGCGAGT
TGCGGTATGTGGTTGGGGAGATCGTGCTCCAGGACATGTCTATCCAGCTG
TCGGCCGGAGTCTGGAGAGACCTCACGTCTTCGTTCTTTCAGTGGGAAGG
GGCTGCGGCCGTCCGCGAGTTGCTCCCCGAGCATGGAGTGGAGTTCCGGT
TCGACGTTTCTCTCACTGCCGACGAGATGGGGTGCACTGCGGGTTCCAGG
ACGGCGCTCGAGATCGTTACCGCCCTCACGAAGAAAACCACGCTCCAGCT
TGGTCGGTGACTCCCCGAGCATGGAGTGGAGTTCCGGTTCGACGTTTCTC
TCACTGCCGACGAGATGGGGTGCACTGCGGGTTCCAGGACGGCGCTCGAG
ATCGTTACCGCCCTCACGAAGAAAACCACGCTCCAGCTTGGTCGGTGA
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