mRNA_H-canaliculatus_F_contig14374.3423.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14374.3423.1
Unique NamemRNA_H-canaliculatus_F_contig14374.3423.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14374.3423.1 vs. uniprot
Match: D7FNN8_ECTSI (Fanconi anemia, complementation group I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNN8_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 4.240e-34
Identity = 66/74 (89.19%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:    1 ISGAQYKERVVSRLFRARWPGVVSVGMCQTLRDLDLGERQLSVAVSRVLRHLRRSAKLHDLPPLTYQLLLLAGR 222
            +SGAQYK+RVVS LFRARWPG VSVGMCQTLRDLDLGER LSVAVSRVLRHLR++AKLHDLP LTYQLLLLAGR
Sbjct:  215 LSGAQYKDRVVSCLFRARWPGAVSVGMCQTLRDLDLGERHLSVAVSRVLRHLRKNAKLHDLPALTYQLLLLAGR 288
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BLAST of mRNA_H-canaliculatus_F_contig14374.3423.1 vs. uniprot
Match: A0A6H5L4Q6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q6_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 4.250e-34
Identity = 66/74 (89.19%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:    1 ISGAQYKERVVSRLFRARWPGVVSVGMCQTLRDLDLGERQLSVAVSRVLRHLRRSAKLHDLPPLTYQLLLLAGR 222
            +SGAQYK+RVVS LFRARWPG VSVGMCQTLRDLDLGER LSVAVSRVLRHLR++AKLHDLP LTYQLLLLAGR
Sbjct:  233 LSGAQYKDRVVSCLFRARWPGAVSVGMCQTLRDLDLGERHLSVAVSRVLRHLRKNAKLHDLPALTYQLLLLAGR 306
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BLAST of mRNA_H-canaliculatus_F_contig14374.3423.1 vs. uniprot
Match: UPI001402C837 (Fanconi anemia group I protein isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001402C837)

HSP 1 Score: 55.5 bits (132), Expect = 3.560e-7
Identity = 28/74 (37.84%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:    1 ISGAQYKERVVSRLFRARWPGVVSVGMCQTLRDLDLGERQLSVAVSRVLRHLRRSAKLHDLPPLTYQLLLLAGR 222
            +SG +YK+++++ L  +RW     + +    RD+ L + +L   + +VLR L  S +L +LPPL YQLLLLA +
Sbjct:  151 LSGMEYKKQIINTLCSSRWDSQCVIHLTSMFRDVPLSQEELQFVMEKVLR-LLPSLELQELPPLVYQLLLLAPK 223
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BLAST of mRNA_H-canaliculatus_F_contig14374.3423.1 vs. uniprot
Match: UPI001455C6E1 (Fanconi anemia group I protein-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455C6E1)

HSP 1 Score: 53.9 bits (128), Expect = 1.250e-6
Identity = 26/74 (35.14%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:    1 ISGAQYKERVVSRLFRARWPGVVSVGMCQTLRDLDLGERQLSVAVSRVLRHLRRSAKLHDLPPLTYQLLLLAGR 222
            +SGA+YK+ V++ L  +RW     + +    R++ L   QL   +++++RH +    L ++PPL YQLLLLA +
Sbjct:  157 MSGAEYKDHVINTLSSSRWDPHCIIHLAAMFREVSLSSDQLKFIMTKIIRHCK-DIDLQEMPPLVYQLLLLATK 229
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BLAST of mRNA_H-canaliculatus_F_contig14374.3423.1 vs. uniprot
Match: A0A8C7NR80_ONCMY (Uncharacterized protein n=3 Tax=Salmoninae TaxID=504568 RepID=A0A8C7NR80_ONCMY)

HSP 1 Score: 50.1 bits (118), Expect = 2.830e-5
Identity = 26/74 (35.14%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:    1 ISGAQYKERVVSRLFRARWPGVVSVGMCQTLRDLDLGERQLSVAVSRVLRHLRRSAKLHDLPPLTYQLLLLAGR 222
            +SG +YK+++++ L  +RW     + +    RD+ L   +L   V +VLR   +   L ++PPL YQLLLLA +
Sbjct:  157 LSGEEYKKQLINSLCSSRWDPQCVIHLTTMFRDVPLAPEELQFLVEKVLRMFLK-LDLQEIPPLVYQLLLLAAK 229
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14374.3423.1 vs. uniprot
Match: A0A8C7K6T2_ONCKI (FA complementation group I n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7K6T2_ONCKI)

HSP 1 Score: 50.1 bits (118), Expect = 2.850e-5
Identity = 26/74 (35.14%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:    1 ISGAQYKERVVSRLFRARWPGVVSVGMCQTLRDLDLGERQLSVAVSRVLRHLRRSAKLHDLPPLTYQLLLLAGR 222
            +SG +YK+++++ L  +RW     + +    RD+ L   +L   V +VLR   +   L ++PPL YQLLLLA +
Sbjct:  154 LSGEEYKKQLINSLCSSRWDPQCVIHLTTMFRDVPLAPEELQFLVEKVLRMFLK-LDLQEIPPLVYQLLLLAAK 226
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14374.3423.1 vs. uniprot
Match: A0A8C7VAN9_ONCMY (Uncharacterized protein n=2 Tax=Oncorhynchus TaxID=8016 RepID=A0A8C7VAN9_ONCMY)

HSP 1 Score: 50.1 bits (118), Expect = 2.850e-5
Identity = 26/74 (35.14%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:    1 ISGAQYKERVVSRLFRARWPGVVSVGMCQTLRDLDLGERQLSVAVSRVLRHLRRSAKLHDLPPLTYQLLLLAGR 222
            +SG +YK+++++ L  +RW     + +    RD+ L   +L   V +VLR   +   L ++PPL YQLLLLA +
Sbjct:  132 LSGEEYKKQLINSLCSSRWDPQCVIHLTTMFRDVPLAPEELQFLVEKVLRMFLK-LDLQEIPPLVYQLLLLAAK 204
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14374.3423.1 vs. uniprot
Match: A0A8C7K6V9_ONCKI (FA complementation group I n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7K6V9_ONCKI)

HSP 1 Score: 50.1 bits (118), Expect = 2.850e-5
Identity = 26/74 (35.14%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:    1 ISGAQYKERVVSRLFRARWPGVVSVGMCQTLRDLDLGERQLSVAVSRVLRHLRRSAKLHDLPPLTYQLLLLAGR 222
            +SG +YK+++++ L  +RW     + +    RD+ L   +L   V +VLR   +   L ++PPL YQLLLLA +
Sbjct:  154 LSGEEYKKQLINSLCSSRWDPQCVIHLTTMFRDVPLAPEELQFLVEKVLRMFLK-LDLQEIPPLVYQLLLLAAK 226
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14374.3423.1 vs. uniprot
Match: A0A8C7NPN1_ONCMY (Uncharacterized protein n=2 Tax=Oncorhynchus TaxID=8016 RepID=A0A8C7NPN1_ONCMY)

HSP 1 Score: 50.1 bits (118), Expect = 2.850e-5
Identity = 26/74 (35.14%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:    1 ISGAQYKERVVSRLFRARWPGVVSVGMCQTLRDLDLGERQLSVAVSRVLRHLRRSAKLHDLPPLTYQLLLLAGR 222
            +SG +YK+++++ L  +RW     + +    RD+ L   +L   V +VLR   +   L ++PPL YQLLLLA +
Sbjct:  149 LSGEEYKKQLINSLCSSRWDPQCVIHLTTMFRDVPLAPEELQFLVEKVLRMFLK-LDLQEIPPLVYQLLLLAAK 221
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14374.3423.1 vs. uniprot
Match: A0A8C7NRD8_ONCMY (Uncharacterized protein n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=A0A8C7NRD8_ONCMY)

HSP 1 Score: 50.1 bits (118), Expect = 2.850e-5
Identity = 26/74 (35.14%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:    1 ISGAQYKERVVSRLFRARWPGVVSVGMCQTLRDLDLGERQLSVAVSRVLRHLRRSAKLHDLPPLTYQLLLLAGR 222
            +SG +YK+++++ L  +RW     + +    RD+ L   +L   V +VLR   +   L ++PPL YQLLLLA +
Sbjct:  154 LSGEEYKKQLINSLCSSRWDPQCVIHLTTMFRDVPLAPEELQFLVEKVLRMFLK-LDLQEIPPLVYQLLLLAAK 226
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14374.3423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7FNN8_ECTSI4.240e-3489.19Fanconi anemia, complementation group I n=1 Tax=Ec... [more]
A0A6H5L4Q6_9PHAE4.250e-3489.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001402C8373.560e-737.84Fanconi anemia group I protein isoform X1 n=2 Tax=... [more]
UPI001455C6E11.250e-635.14Fanconi anemia group I protein-like n=1 Tax=Asteri... [more]
A0A8C7NR80_ONCMY2.830e-535.14Uncharacterized protein n=3 Tax=Salmoninae TaxID=5... [more]
A0A8C7K6T2_ONCKI2.850e-535.14FA complementation group I n=1 Tax=Oncorhynchus ki... [more]
A0A8C7VAN9_ONCMY2.850e-535.14Uncharacterized protein n=2 Tax=Oncorhynchus TaxID... [more]
A0A8C7K6V9_ONCKI2.850e-535.14FA complementation group I n=1 Tax=Oncorhynchus ki... [more]
A0A8C7NPN1_ONCMY2.850e-535.14Uncharacterized protein n=2 Tax=Oncorhynchus TaxID... [more]
A0A8C7NRD8_ONCMY2.850e-535.14Uncharacterized protein n=1 Tax=Oncorhynchus mykis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14374contigH-canaliculatus_F_contig14374:550..771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.9
Seed ortholog evalue6.2e-29
Seed eggNOG ortholog2880.D7FNN8
Preferred nameFANCI
KEGG koko:K10895,ko:K16815
KEGG Pathwayko03460,map03460
GOsGO:0000075,GO:0000077,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007093,GO:0007095,GO:0007346,GO:0008150,GO:0008152,GO:0009893,GO:0009987,GO:0010389,GO:0010564,GO:0010604,GO:0010948,GO:0010972,GO:0019222,GO:0019899,GO:0022402,GO:0031323,GO:0031325,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031570,GO:0031572,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032991,GO:0033554,GO:0034641,GO:0036297,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043240,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045786,GO:0045930,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070182,GO:0071704,GO:0080090,GO:0090304,GO:1901360,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903047,GO:1903320,GO:1903322
EggNOG free text desc.DNA polymerase binding
EggNOG OGsKOG4553@1,KOG4553@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929191.9467783-CDS-H-canaliculatus_F_contig14374:549..7711622929191.9467783-CDS-H-canaliculatus_F_contig14374:549..771Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14374 550..771 -
1696845711.5130682-CDS-H-canaliculatus_F_contig14374:549..7711696845711.5130682-CDS-H-canaliculatus_F_contig14374:549..771Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14374 550..771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14374.3423.1prot_H-canaliculatus_F_contig14374.3423.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14374 550..771 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14374.3423.1

>prot_H-canaliculatus_F_contig14374.3423.1 ID=prot_H-canaliculatus_F_contig14374.3423.1|Name=mRNA_H-canaliculatus_F_contig14374.3423.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=74bp
ISGAQYKERVVSRLFRARWPGVVSVGMCQTLRDLDLGERQLSVAVSRVLR
HLRRSAKLHDLPPLTYQLLLLAGR
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mRNA from alignment at H-canaliculatus_F_contig14374:550..771-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14374.3423.1 ID=mRNA_H-canaliculatus_F_contig14374.3423.1|Name=mRNA_H-canaliculatus_F_contig14374.3423.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=222bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14374:550..771- (Hapterophycus canaliculatus Oshoro5f female)
ATCTCCGGCGCGCAGTACAAGGAGAGGGTAGTGTCGCGCCTGTTCAGGGC
CAGGTGGCCCGGGGTGGTCTCGGTCGGCATGTGCCAGACGCTGAGAGACC
TGGACCTCGGGGAGCGGCAGCTGTCCGTAGCGGTCTCGCGCGTGCTGCGA
CACCTGCGGAGGAGCGCCAAGCTCCACGACCTCCCGCCGTTGACCTACCA
GCTGTTGCTGCTTGCCGGAAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14374:550..771-

>mRNA_H-canaliculatus_F_contig14374.3423.1 ID=mRNA_H-canaliculatus_F_contig14374.3423.1|Name=mRNA_H-canaliculatus_F_contig14374.3423.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=444bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14374:550..771- (Hapterophycus canaliculatus Oshoro5f female)
ATCTCCGGCGCGCAGTACAAGGAGAGGGTAGTGTCGCGCCTGTTCAGGGC
CAGGTGGCCCGGGGTGGTCTCGGTCGGCATGTGCCAGACGCTGAGAGACC
TGGACCTCGGGGAGCGGCAGCTGTCCGTAGCGGTCTCGCGCGTGCTGCGA
CACCTGCGGAGGAGCGCCAAGCTCCACGACCTCCCGCCGTTGACCTACCA
GCTGTTGCTGCTTGCCGGAAGGATCTCCGGCGCGCAGTACAAGGAGAGGG
TAGTGTCGCGCCTGTTCAGGGCCAGGTGGCCCGGGGTGGTCTCGGTCGGC
ATGTGCCAGACGCTGAGAGACCTGGACCTCGGGGAGCGGCAGCTGTCCGT
AGCGGTCTCGCGCGTGCTGCGACACCTGCGGAGGAGCGCCAAGCTCCACG
ACCTCCCGCCGTTGACCTACCAGCTGTTGCTGCTTGCCGGAAGG
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