mRNA_H-canaliculatus_F_contig14373.3422.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14373.3422.1
Unique NamemRNA_H-canaliculatus_F_contig14373.3422.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14373.3422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14373contigH-canaliculatus_F_contig14373:710..1179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size471
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929191.8932106-CDS-H-canaliculatus_F_contig14373:709..10931622929191.8932106-CDS-H-canaliculatus_F_contig14373:709..1093Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14373 710..1093 +
1696845711.4936755-CDS-H-canaliculatus_F_contig14373:709..10931696845711.4936755-CDS-H-canaliculatus_F_contig14373:709..1093Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14373 710..1093 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929191.9065828-UTR-H-canaliculatus_F_contig14373:1093..11791622929191.9065828-UTR-H-canaliculatus_F_contig14373:1093..1179Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14373 1094..1179 +
1696845711.5032394-UTR-H-canaliculatus_F_contig14373:1093..11791696845711.5032394-UTR-H-canaliculatus_F_contig14373:1093..1179Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14373 1094..1179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14373.3422.1prot_H-canaliculatus_F_contig14373.3422.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14373 710..1093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14373.3422.1

>prot_H-canaliculatus_F_contig14373.3422.1 ID=prot_H-canaliculatus_F_contig14373.3422.1|Name=mRNA_H-canaliculatus_F_contig14373.3422.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=128bp
KWGDRPGVVFHKESGQGTLLSLHEDPRPRDTPPSSETGGVRVVVRDGGQQ
QAPLFSSFVLLRVGTGAPRASPPLQDEDLQKHLAETSDQSFSVHLWYATS
PFLLHRLIFCSKPRAHLPCRPRCPLGF*
back to top

mRNA from alignment at H-canaliculatus_F_contig14373:710..1179+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14373.3422.1 ID=mRNA_H-canaliculatus_F_contig14373.3422.1|Name=mRNA_H-canaliculatus_F_contig14373.3422.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=470bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14373:710..1179+ (Hapterophycus canaliculatus Oshoro5f female)
AAATGGGGTGACCGGCCGGGTGTAGTTTTTCACAAGGAGAGCGGTCAAGG
CACGTTGCTGTCGTTGCACGAGGATCCTCGACCGAGGGACACGCCGCCGT
CGTCCGAGACGGGCGGAGTAAGGGTCGTGGTCCGTGACGGCGGGCAGCAG
CAGGCACCGCTGTTTTCATCGTTCGTGCTCCTACGGGTGGGTACAGGTGC
GCCTCGGGCCTCTCCGCCTCTTCAGGACGAAGATCTGCAGAAACATCTTG
CAGAGACATCCGACCAATCGTTCTCCGTGCATCTCTGGTACGCGACAAGT
CCCTTCCTCTTGCACCGCCTCATTTTCTGCTCAAAACCGCGAGCTCATCT
TCCTTGTCGACCACGGTGCCCCCTCGGCTTTTGACTTGTCTCGACTGAAC
GGCGGACAGACGCGTTCGACGGCCAACAATCGCTTCGGGTAACCAGCATA
ACCACGCACCCCACTACCCC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14373:710..1179+

>mRNA_H-canaliculatus_F_contig14373.3422.1 ID=mRNA_H-canaliculatus_F_contig14373.3422.1|Name=mRNA_H-canaliculatus_F_contig14373.3422.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=768bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14373:710..1179+ (Hapterophycus canaliculatus Oshoro5f female)
AAATGGGGTGACCGGCCGGGTGTAGTTTTTCACAAGGAGAGCGGTCAAGG
CACGTTGCTGTCGTTGCACGAGGATCCTCGACCGAGGGACACGCCGCCGT
CGTCCGAGACGGGCGGAGTAAGGGTCGTGGTCCGTGACGGCGGGCAGCAG
CAGGCACCGCTGTTTTCATCGTTCGTGCTCCTACGGGTGGGTACAGGTGC
GCCTCGGGCCTCTCCGCCTCTTCAGGACGAAGATCTGCAGAAACATCTTG
CAGAGACATCCGACCAATCGTTCTCCGTGCATCTCTGGTACGCGACAAGT
CCCTTCCTCTTGCACCGCCTCATTTTCTGCTCAAAACCGCGAGCTCATCT
TCCTTGTCGACCACGGTGCCCCCTCGGCTTTTGAAAATGGGGTGACCGGC
CGGGTGTAGTTTTTCACAAGGAGAGCGGTCAAGGCACGTTGCTGTCGTTG
CACGAGGATCCTCGACCGAGGGACACGCCGCCGTCGTCCGAGACGGGCGG
AGTAAGGGTCGTGGTCCGTGACGGCGGGCAGCAGCAGGCACCGCTGTTTT
CATCGTTCGTGCTCCTACGGGTGGGTACAGGTGCGCCTCGGGCCTCTCCG
CCTCTTCAGGACGAAGATCTGCAGAAACATCTTGCAGAGACATCCGACCA
ATCGTTCTCCGTGCATCTCTGGTACGCGACAAGTCCCTTCCTCTTGCACC
GCCTCATTTTCTGCTCAAAACCGCGAGCTCATCTTCCTTGTCGACCACGG
TGCCCCCTCGGCTTTTGA
back to top