mRNA_H-canaliculatus_F_contig14364.3418.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig14364.3418.1 vs. uniprot
Match: D7FTA9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTA9_ECTSI) HSP 1 Score: 76.3 bits (186), Expect = 1.160e-15 Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 1
Query: 7 RLGVMAAAIPGDSFAGEVVVGGLLNFLSIYNILITGRVLLSWVPQ 141
R +AAA+PGDSF EVVVGG+LNFLSIYN+LITGRVLLSWVPQ
Sbjct: 67 RYSCVAAALPGDSFTSEVVVGGVLNFLSIYNLLITGRVLLSWVPQ 111
BLAST of mRNA_H-canaliculatus_F_contig14364.3418.1 vs. uniprot
Match: A0A7S1VL38_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VL38_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 3.580e-11 Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1
Query: 4 RRLGVMAAAIPGDSFAGEVVVGGLLNFLSIYNILITGRVLLSWVPQ 141
R V A AIPGD A ++VVGG NFL IYN ++TGR+LLSWVPQ
Sbjct: 67 RASSVTAMAIPGDGIAEQIVVGGFANFLQIYNFILTGRILLSWVPQ 112
BLAST of mRNA_H-canaliculatus_F_contig14364.3418.1 vs. uniprot
Match: A0A1Z5KLA7_FISSO (YggT family protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KLA7_FISSO) HSP 1 Score: 59.3 bits (142), Expect = 1.840e-9 Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 1
Query: 4 RRLGVMAAAIPGDSFAGEVVVGGLLNFLSIYNILITGRVLLSWVPQ 141
R V A AIPG+ A +V VGG NFLSIYN++IT R+LLSW PQ
Sbjct: 56 RASAVTAMAIPGNGIAEQVFVGGFSNFLSIYNLIITARILLSWFPQ 101
BLAST of mRNA_H-canaliculatus_F_contig14364.3418.1 vs. uniprot
Match: A0A7S1GGH8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GGH8_CYCTE) HSP 1 Score: 57.4 bits (137), Expect = 4.760e-9 Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1
Query: 16 VMAAAIPGDSFAGEVVVGGLLNFLSIYNILITGRVLLSWVPQ 141
++A AIPG+ ++ VGG NFLSIYNI+IT R+LLSW PQ
Sbjct: 17 ILAMAIPGNGVTEQIFVGGFANFLSIYNIVITARILLSWFPQ 58
BLAST of mRNA_H-canaliculatus_F_contig14364.3418.1 vs. uniprot
Match: A0A1Z5JAT7_FISSO (Diphthine--ammonia ligase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JAT7_FISSO) HSP 1 Score: 59.3 bits (142), Expect = 4.880e-9 Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 1
Query: 4 RRLGVMAAAIPGDSFAGEVVVGGLLNFLSIYNILITGRVLLSWVPQ 141
R V A AIPG+ A +V VGG NFLSIYN++IT R+LLSW PQ
Sbjct: 56 RASAVTAMAIPGNGIAEQVFVGGFSNFLSIYNLIITARILLSWFPQ 101
BLAST of mRNA_H-canaliculatus_F_contig14364.3418.1 vs. uniprot
Match: A0A7S2YCS8_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YCS8_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 5.300e-9 Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query: 22 AAAIPGDSFAGEVVVGGLLNFLSIYNILITGRVLLSWVPQ 141
A AIPG A +V VGG NFLSIYN++ITGR+LLSW PQ
Sbjct: 74 AMAIPGYGIAEQVFVGGFANFLSIYNLIITGRILLSWFPQ 113
BLAST of mRNA_H-canaliculatus_F_contig14364.3418.1 vs. uniprot
Match: K0RQ89_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RQ89_THAOC) HSP 1 Score: 58.9 bits (141), Expect = 6.670e-9 Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1
Query: 1 GRRLGVMAAAIPGDSFAGEVVVGGLLNFLSIYNILITGRVLLSWVPQ 141
GR +A AIPG+S A +VVVGG NF+SIYN +IT R+LLSW PQ
Sbjct: 63 GRLRHPLAIAIPGNSVAEQVVVGGFGNFISIYNTVITARILLSWFPQ 109
BLAST of mRNA_H-canaliculatus_F_contig14364.3418.1 vs. uniprot
Match: A0A7S2MRY2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MRY2_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 7.410e-9 Identity = 29/47 (61.70%), Postives = 32/47 (68.09%), Query Frame = 1
Query: 1 GRRLGVMAAAIPGDSFAGEVVVGGLLNFLSIYNILITGRVLLSWVPQ 141
G G MA AIPG A +V VGG NFLSIYN +IT R+LLSW PQ
Sbjct: 98 GAGHGSMAMAIPGYGVAEQVFVGGFANFLSIYNFIITARILLSWFPQ 144
BLAST of mRNA_H-canaliculatus_F_contig14364.3418.1 vs. uniprot
Match: B7G073_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G073_PHATC) HSP 1 Score: 57.8 bits (138), Expect = 1.070e-8 Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query: 22 AAAIPGDSFAGEVVVGGLLNFLSIYNILITGRVLLSWVPQ 141
A AIPG A +V VGG LNFLSIYNI+IT R+LLSW PQ
Sbjct: 104 AMAIPGYGVAEQVFVGGFLNFLSIYNIVITARILLSWFPQ 143
BLAST of mRNA_H-canaliculatus_F_contig14364.3418.1 vs. uniprot
Match: A0A7S2XJH8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJH8_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 2.330e-8 Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1
Query: 13 GVMAAAIPGDSFAGEVVVGGLLNFLSIYNILITGRVLLSWVPQ 141
G +A AIPGD ++V+GG NFL IYN++IT RVLLSW PQ
Sbjct: 91 GRLAMAIPGDGVVEQIVLGGFGNFLQIYNLVITARVLLSWFPQ 133 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14364.3418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig14364.3418.1 >prot_H-canaliculatus_F_contig14364.3418.1 ID=prot_H-canaliculatus_F_contig14364.3418.1|Name=mRNA_H-canaliculatus_F_contig14364.3418.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=41bp MAAAIPGDSFAGEVVVGGLLNFLSIYNILITGRVLLSWVPQback to top mRNA from alignment at H-canaliculatus_F_contig14364:1614..1754- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig14364.3418.1 ID=mRNA_H-canaliculatus_F_contig14364.3418.1|Name=mRNA_H-canaliculatus_F_contig14364.3418.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=141bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14364:1614..1754- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14364:1614..1754- >mRNA_H-canaliculatus_F_contig14364.3418.1 ID=mRNA_H-canaliculatus_F_contig14364.3418.1|Name=mRNA_H-canaliculatus_F_contig14364.3418.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=246bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14364:1614..1754- (Hapterophycus canaliculatus Oshoro5f female)back to top |