mRNA_H-canaliculatus_F_contig1435.3406.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1435.3406.1
Unique NamemRNA_H-canaliculatus_F_contig1435.3406.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1435.3406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1435contigH-canaliculatus_F_contig1435:9548..10292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size745
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1435.3406.1prot_H-canaliculatus_F_contig1435.3406.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1435 9585..10040 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929188.8118663-UTR-H-canaliculatus_F_contig1435:9547..95841622929188.8118663-UTR-H-canaliculatus_F_contig1435:9547..9584Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1435 9548..9584 +
1696845710.5890136-UTR-H-canaliculatus_F_contig1435:9547..95841696845710.5890136-UTR-H-canaliculatus_F_contig1435:9547..9584Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1435 9548..9584 +
1622929188.8292694-UTR-H-canaliculatus_F_contig1435:10040..102921622929188.8292694-UTR-H-canaliculatus_F_contig1435:10040..10292Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1435 10041..10292 +
1696845710.6107876-UTR-H-canaliculatus_F_contig1435:10040..102921696845710.6107876-UTR-H-canaliculatus_F_contig1435:10040..10292Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1435 10041..10292 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929188.8205607-CDS-H-canaliculatus_F_contig1435:9584..100401622929188.8205607-CDS-H-canaliculatus_F_contig1435:9584..10040Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1435 9585..10040 +
1696845710.6014812-CDS-H-canaliculatus_F_contig1435:9584..100401696845710.6014812-CDS-H-canaliculatus_F_contig1435:9584..10040Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1435 9585..10040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1435.3406.1

>prot_H-canaliculatus_F_contig1435.3406.1 ID=prot_H-canaliculatus_F_contig1435.3406.1|Name=mRNA_H-canaliculatus_F_contig1435.3406.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=152bp
MIQSSPKRATAATKVVIAQMVAFLAAGLVHQLVLKGNSVLPQSDLADDSR
IAVYMPCCSRRSEPLDISPLRVSRKVSAARIARHEPQTNLSHVAPASRAL
PPSCSLSFSSLASSSSSDLLSLSRLASSSSSDLFSLRSQVSSSSLHEPLL
C*
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mRNA from alignment at H-canaliculatus_F_contig1435:9548..10292+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1435.3406.1 ID=mRNA_H-canaliculatus_F_contig1435.3406.1|Name=mRNA_H-canaliculatus_F_contig1435.3406.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=745bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1435:9548..10292+ (Hapterophycus canaliculatus Oshoro5f female)
GGGCGACAGCCGCGACAGCAGCCGCCAAGCACTATTAATGATCCAGTCAT
CGCCGAAAAGGGCGACAGCCGCAACAAAGGTGGTCATAGCACAGATGGTG
GCTTTTCTCGCTGCGGGTCTGGTGCACCAGCTGGTCTTGAAGGGAAACTC
TGTCCTTCCTCAGAGTGACCTCGCTGACGATTCCCGCATCGCTGTCTACA
TGCCATGCTGCTCCCGGCGGAGCGAACCGCTCGACATTTCGCCGCTTAGG
GTTAGCCGCAAAGTGAGCGCTGCTCGAATCGCACGACACGAACCACAAAC
GAACCTCTCCCATGTTGCCCCTGCATCACGAGCTCTTCCTCCTTCTTGCT
CTCTCTCTTTCTCCAGTCTTGCAAGCTCTTCCTCCTCCGACTTGCTGTCT
CTCTCCCGTCTCGCAAGCTCTTCTTCCTCAGACTTGTTCTCTCTCAGGTC
CCAAGTCTCCTCCTCGTCTCTTCACGAACCTCTACTTTGTTGAAATATAT
CCCGTTGCTATCCCGGTCCCCGTTGGCCACACCGTGCTACTGGATTATCC
CATTGCTGTCTCGGTCCCCGTCTTGGCCACCGTTCCAGCTATGCAATACC
CTCTGACTGTCCCGGCCCCCGTGGCTATCGTCCCTGTTTTACGCACACAG
ACCCACCTGTTTCGACCAACTCCGCCATGACCTAGTCCCGGGTGTTAGAT
AGTACACTTTACCACTTGACCATAGTCAGCGCTGACTATGATCTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1435:9548..10292+

>mRNA_H-canaliculatus_F_contig1435.3406.1 ID=mRNA_H-canaliculatus_F_contig1435.3406.1|Name=mRNA_H-canaliculatus_F_contig1435.3406.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=912bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1435:9548..10292+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATCCAGTCATCGCCGAAAAGGGCGACAGCCGCAACAAAGGTGGTCAT
AGCACAGATGGTGGCTTTTCTCGCTGCGGGTCTGGTGCACCAGCTGGTCT
TGAAGGGAAACTCTGTCCTTCCTCAGAGTGACCTCGCTGACGATTCCCGC
ATCGCTGTCTACATGCCATGCTGCTCCCGGCGGAGCGAACCGCTCGACAT
TTCGCCGCTTAGGGTTAGCCGCAAAGTGAGCGCTGCTCGAATCGCACGAC
ACGAACCACAAACGAACCTCTCCCATGTTGCCCCTGCATCACGAGCTCTT
CCTCCTTCTTGCTCTCTCTCTTTCTCCAGTCTTGCAAGCTCTTCCTCCTC
CGACTTGCTGTCTCTCTCCCGTCTCGCAAGCTCTTCTTCCTCAGACTTGT
TCTCTCTCAGGTCCCAAGTCTCCTCCTCGTCTCTTCACGAACCTCTACTT
TGTTGAATGATCCAGTCATCGCCGAAAAGGGCGACAGCCGCAACAAAGGT
GGTCATAGCACAGATGGTGGCTTTTCTCGCTGCGGGTCTGGTGCACCAGC
TGGTCTTGAAGGGAAACTCTGTCCTTCCTCAGAGTGACCTCGCTGACGAT
TCCCGCATCGCTGTCTACATGCCATGCTGCTCCCGGCGGAGCGAACCGCT
CGACATTTCGCCGCTTAGGGTTAGCCGCAAAGTGAGCGCTGCTCGAATCG
CACGACACGAACCACAAACGAACCTCTCCCATGTTGCCCCTGCATCACGA
GCTCTTCCTCCTTCTTGCTCTCTCTCTTTCTCCAGTCTTGCAAGCTCTTC
CTCCTCCGACTTGCTGTCTCTCTCCCGTCTCGCAAGCTCTTCTTCCTCAG
ACTTGTTCTCTCTCAGGTCCCAAGTCTCCTCCTCGTCTCTTCACGAACCT
CTACTTTGTTGA
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