mRNA_H-canaliculatus_F_contig14349.3403.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14349.3403.1
Unique NamemRNA_H-canaliculatus_F_contig14349.3403.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14349.3403.1 vs. uniprot
Match: D8LMQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ8_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 5.250e-56
Identity = 95/110 (86.36%), Postives = 103/110 (93.64%), Query Frame = 1 
Query:    1 AQSTIQQTPLMSLVGLLVGLVLSVVKGAFGDLFRALGLASALAVTRSHRLSAEYPFLPYARRALAMLPRRPFPPAENPWKYKRADALAELEEAGVA-DGGNLPAEFSMAK 327
            ++STIQ+TP+MSLVGLLVGLVLSV +GAFGDLFRALGLAS LAV+RS RLSAEYPFLPYARRAL MLPRRPFPPAENPWKYKRADA+AELE+AGV  D GNLPAEFSMAK
Sbjct:    3 SKSTIQRTPVMSLVGLLVGLVLSVARGAFGDLFRALGLASVLAVSRSRRLSAEYPFLPYARRALVMLPRRPFPPAENPWKYKRADAIAELEDAGVPLDAGNLPAEFSMAK 112
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BLAST of mRNA_H-canaliculatus_F_contig14349.3403.1 vs. uniprot
Match: A0A6H5K822_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K822_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 3.750e-53
Identity = 95/110 (86.36%), Postives = 103/110 (93.64%), Query Frame = 1 
Query:    1 AQSTIQQTPLMSLVGLLVGLVLSVVKGAFGDLFRALGLASALAVTRSHRLSAEYPFLPYARRALAMLPRRPFPPAENPWKYKRADALAELEEAGVA-DGGNLPAEFSMAK 327
            ++STIQ+TP+MSLVGLLVGLVLSV +GAFGDLFRALGLAS LAV+RS RLSAEYPFLPYARRAL MLPRRPFPPAENPWKYKRADA+AELE+AGV  D GNLPAEFSMAK
Sbjct:  221 SKSTIQRTPVMSLVGLLVGLVLSVARGAFGDLFRALGLASVLAVSRSRRLSAEYPFLPYARRALVMLPRRPFPPAENPWKYKRADAIAELEDAGVPLDAGNLPAEFSMAK 330
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BLAST of mRNA_H-canaliculatus_F_contig14349.3403.1 vs. uniprot
Match: A0A835Z6C8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C8_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.150e-15
Identity = 40/74 (54.05%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:    1 AQSTIQQTPLMSLVGLLVGLVLSVVKGAFGDLFRALGLASALAVTRSHRLSAEYPFLPYARRALAMLPRRPFPP 222
            ++ST+ +TP M+L GL +GL+LS+ +GAFGDL RALGL + L V RS  + ++YP LP  + A+ M PRRPFPP
Sbjct:  167 SESTVHKTPSMALAGLFLGLMLSIARGAFGDLLRALGLGAYLTVVRSASIGSKYPILPQLKAAMHMGPRRPFPP 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14349.3403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMQ8_ECTSI5.250e-5686.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K822_9PHAE3.750e-5386.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z6C8_9STRA1.150e-1554.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14349contigH-canaliculatus_F_contig14349:161..487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue4.7e-40
Seed eggNOG ortholog2880.D8LMQ8
EggNOG OGs2E303@1,2SA5N@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_003310.1
Exons1
Model size327
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929187.7561696-CDS-H-canaliculatus_F_contig14349:160..4571622929187.7561696-CDS-H-canaliculatus_F_contig14349:160..457Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14349 161..457 -
1696845710.56337-CDS-H-canaliculatus_F_contig14349:160..4571696845710.56337-CDS-H-canaliculatus_F_contig14349:160..457Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14349 161..457 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929187.7687488-UTR-H-canaliculatus_F_contig14349:457..4871622929187.7687488-UTR-H-canaliculatus_F_contig14349:457..487Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14349 458..487 -
1696845710.5782812-UTR-H-canaliculatus_F_contig14349:457..4871696845710.5782812-UTR-H-canaliculatus_F_contig14349:457..487Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14349 458..487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14349.3403.1prot_H-canaliculatus_F_contig14349.3403.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14349 161..457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14349.3403.1

>prot_H-canaliculatus_F_contig14349.3403.1 ID=prot_H-canaliculatus_F_contig14349.3403.1|Name=mRNA_H-canaliculatus_F_contig14349.3403.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=99bp
MSLVGLLVGLVLSVVKGAFGDLFRALGLASALAVTRSHRLSAEYPFLPYA
RRALAMLPRRPFPPAENPWKYKRADALAELEEAGVADGGNLPAEFSMAK
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mRNA from alignment at H-canaliculatus_F_contig14349:161..487-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14349.3403.1 ID=mRNA_H-canaliculatus_F_contig14349.3403.1|Name=mRNA_H-canaliculatus_F_contig14349.3403.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=327bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14349:161..487- (Hapterophycus canaliculatus Oshoro5f female)
GCCCAGTCGACGATCCAACAGACCCCGCTGATGTCGCTCGTGGGCCTCCT
CGTGGGCCTCGTGCTGAGCGTGGTCAAGGGGGCCTTCGGCGACCTCTTTC
GCGCGCTGGGGCTCGCGTCCGCCCTCGCCGTCACCCGCAGCCACCGCCTG
TCGGCCGAGTATCCCTTCCTGCCGTACGCCAGGAGGGCCCTGGCGATGCT
GCCCCGCCGGCCGTTCCCCCCGGCGGAGAACCCGTGGAAGTACAAGAGGG
CGGACGCGCTCGCGGAGCTGGAGGAGGCCGGCGTGGCGGACGGCGGGAAC
TTGCCGGCGGAGTTCAGCATGGCGAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14349:161..487-

>mRNA_H-canaliculatus_F_contig14349.3403.1 ID=mRNA_H-canaliculatus_F_contig14349.3403.1|Name=mRNA_H-canaliculatus_F_contig14349.3403.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=594bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14349:161..487- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGCTCGTGGGCCTCCTCGTGGGCCTCGTGCTGAGCGTGGTCAAGGG
GGCCTTCGGCGACCTCTTTCGCGCGCTGGGGCTCGCGTCCGCCCTCGCCG
TCACCCGCAGCCACCGCCTGTCGGCCGAGTATCCCTTCCTGCCGTACGCC
AGGAGGGCCCTGGCGATGCTGCCCCGCCGGCCGTTCCCCCCGGCGGAGAA
CCCGTGGAAGTACAAGAGGGCGGACGCGCTCGCGGAGCTGGAGGAGGCCG
GCGTGGCGGACGGCGGGAACTTGCCGGCGGAGTTCAGCATGGCGAAGATG
TCGCTCGTGGGCCTCCTCGTGGGCCTCGTGCTGAGCGTGGTCAAGGGGGC
CTTCGGCGACCTCTTTCGCGCGCTGGGGCTCGCGTCCGCCCTCGCCGTCA
CCCGCAGCCACCGCCTGTCGGCCGAGTATCCCTTCCTGCCGTACGCCAGG
AGGGCCCTGGCGATGCTGCCCCGCCGGCCGTTCCCCCCGGCGGAGAACCC
GTGGAAGTACAAGAGGGCGGACGCGCTCGCGGAGCTGGAGGAGGCCGGCG
TGGCGGACGGCGGGAACTTGCCGGCGGAGTTCAGCATGGCGAAG
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