mRNA_H-canaliculatus_F_contig14348.3402.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14348.3402.1
Unique NamemRNA_H-canaliculatus_F_contig14348.3402.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14348.3402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14348contigH-canaliculatus_F_contig14348:950..1269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size322
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929183.3371875-CDS-H-canaliculatus_F_contig14348:949..12671622929183.3371875-CDS-H-canaliculatus_F_contig14348:949..1267Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14348 950..1267 +
1696845710.5295844-CDS-H-canaliculatus_F_contig14348:949..12671696845710.5295844-CDS-H-canaliculatus_F_contig14348:949..1267Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14348 950..1267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14348.3402.1prot_H-canaliculatus_F_contig14348.3402.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14348 950..1267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14348.3402.1

>prot_H-canaliculatus_F_contig14348.3402.1 ID=prot_H-canaliculatus_F_contig14348.3402.1|Name=mRNA_H-canaliculatus_F_contig14348.3402.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=106bp
KPKARGQRLAEGRGPVTLFFAVGQIAELIGQLDLPHPRARRATALTHPLP
PRSEPCAPQAFALARALSQHSACRPVYNVVAVLASNVGPPPPPFSPLCCG
VCQDTD
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mRNA from alignment at H-canaliculatus_F_contig14348:950..1269+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14348.3402.1 ID=mRNA_H-canaliculatus_F_contig14348.3402.1|Name=mRNA_H-canaliculatus_F_contig14348.3402.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=320bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14348:950..1269+ (Hapterophycus canaliculatus Oshoro5f female)
AAACCCAAGGCCAGAGGCCAGAGACTTGCAGAGGGACGGGGACCCGTCAC
ACTTTTTTTCGCCGTGGGACAGATCGCGGAGCTGATCGGCCAGCTTGACT
TGCCACACCCTCGGGCTCGGCGTGCGACGGCTTTGACGCATCCACTCCCC
CCACGCAGCGAGCCGTGTGCGCCGCAAGCGTTTGCGCTCGCACGCGCGCT
GTCTCAGCACTCGGCCTGTCGACCCGTCTACAATGTTGTGGCTGTGCTCG
CGTCGAACGTTGGACCTCCCCCTCCCCCTTTTTCTCCGCTGTGTTGTGGC
GTTTGTCAGGACACCGATAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14348:950..1269+

>mRNA_H-canaliculatus_F_contig14348.3402.1 ID=mRNA_H-canaliculatus_F_contig14348.3402.1|Name=mRNA_H-canaliculatus_F_contig14348.3402.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=636bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14348:950..1269+ (Hapterophycus canaliculatus Oshoro5f female)
AAACCCAAGGCCAGAGGCCAGAGACTTGCAGAGGGACGGGGACCCGTCAC
ACTTTTTTTCGCCGTGGGACAGATCGCGGAGCTGATCGGCCAGCTTGACT
TGCCACACCCTCGGGCTCGGCGTGCGACGGCTTTGACGCATCCACTCCCC
CCACGCAGCGAGCCGTGTGCGCCGCAAGCGTTTGCGCTCGCACGCGCGCT
GTCTCAGCACTCGGCCTGTCGACCCGTCTACAATGTTGTGGCTGTGCTCG
CGTCGAACGTTGGACCTCCCCCTCCCCCTTTTTCTCCGCTGTGTTGTGGC
GTTTGTCAGGACACCGATAAACCCAAGGCCAGAGGCCAGAGACTTGCAGA
GGGACGGGGACCCGTCACACTTTTTTTCGCCGTGGGACAGATCGCGGAGC
TGATCGGCCAGCTTGACTTGCCACACCCTCGGGCTCGGCGTGCGACGGCT
TTGACGCATCCACTCCCCCCACGCAGCGAGCCGTGTGCGCCGCAAGCGTT
TGCGCTCGCACGCGCGCTGTCTCAGCACTCGGCCTGTCGACCCGTCTACA
ATGTTGTGGCTGTGCTCGCGTCGAACGTTGGACCTCCCCCTCCCCCTTTT
TCTCCGCTGTGTTGTGGCGTTTGTCAGGACACCGAT
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