mRNA_H-canaliculatus_F_contig1434.3399.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1434.3399.1
Unique NamemRNA_H-canaliculatus_F_contig1434.3399.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1434.3399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1434contigH-canaliculatus_F_contig1434:26506..26814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929182.010258-CDS-H-canaliculatus_F_contig1434:26505..268141622929182.010258-CDS-H-canaliculatus_F_contig1434:26505..26814Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1434 26506..26814 +
1696845710.0390265-CDS-H-canaliculatus_F_contig1434:26505..268141696845710.0390265-CDS-H-canaliculatus_F_contig1434:26505..26814Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1434 26506..26814 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1434.3399.1prot_H-canaliculatus_F_contig1434.3399.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1434 26506..26814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1434.3399.1

>prot_H-canaliculatus_F_contig1434.3399.1 ID=prot_H-canaliculatus_F_contig1434.3399.1|Name=mRNA_H-canaliculatus_F_contig1434.3399.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=103bp
MYVRDGSSQFSYKSVTALHQNCDSSMCVIRTWRALRVGLSRPSKIPREHK
LPLALPAMRAFESFSVYRNAVKSSFLPLKSAATCRARARITRVRGQHCHS
CQS
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mRNA from alignment at H-canaliculatus_F_contig1434:26506..26814+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1434.3399.1 ID=mRNA_H-canaliculatus_F_contig1434.3399.1|Name=mRNA_H-canaliculatus_F_contig1434.3399.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=309bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1434:26506..26814+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTACGTGCGAGATGGCTCCTCGCAGTTCAGCTACAAGAGCGTCACAGC
GCTGCACCAAAACTGCGATTCCTCGATGTGCGTGATTCGTACGTGGCGCG
CTTTGCGCGTTGGCCTCTCGCGCCCTTCGAAGATCCCGCGGGAACACAAG
TTGCCACTTGCCCTTCCTGCGATGCGTGCATTCGAGTCATTTTCTGTGTA
CCGTAATGCAGTAAAATCCTCATTCCTACCACTAAAGTCTGCCGCAACCT
GCCGTGCTCGGGCACGCATCACGCGTGTACGTGGACAGCACTGTCACTCC
TGTCAGAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1434:26506..26814+

>mRNA_H-canaliculatus_F_contig1434.3399.1 ID=mRNA_H-canaliculatus_F_contig1434.3399.1|Name=mRNA_H-canaliculatus_F_contig1434.3399.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=618bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1434:26506..26814+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTACGTGCGAGATGGCTCCTCGCAGTTCAGCTACAAGAGCGTCACAGC
GCTGCACCAAAACTGCGATTCCTCGATGTGCGTGATTCGTACGTGGCGCG
CTTTGCGCGTTGGCCTCTCGCGCCCTTCGAAGATCCCGCGGGAACACAAG
TTGCCACTTGCCCTTCCTGCGATGCGTGCATTCGAGTCATTTTCTGTGTA
CCGTAATGCAGTAAAATCCTCATTCCTACCACTAAAGTCTGCCGCAACCT
GCCGTGCTCGGGCACGCATCACGCGTGTACGTGGACAGCACTGTCACTCC
TGTCAGAGCATGTACGTGCGAGATGGCTCCTCGCAGTTCAGCTACAAGAG
CGTCACAGCGCTGCACCAAAACTGCGATTCCTCGATGTGCGTGATTCGTA
CGTGGCGCGCTTTGCGCGTTGGCCTCTCGCGCCCTTCGAAGATCCCGCGG
GAACACAAGTTGCCACTTGCCCTTCCTGCGATGCGTGCATTCGAGTCATT
TTCTGTGTACCGTAATGCAGTAAAATCCTCATTCCTACCACTAAAGTCTG
CCGCAACCTGCCGTGCTCGGGCACGCATCACGCGTGTACGTGGACAGCAC
TGTCACTCCTGTCAGAGC
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