mRNA_H-canaliculatus_F_contig1434.3396.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1434.3396.1 vs. uniprot
Match: A0A6H5KHC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHC8_9PHAE) HSP 1 Score: 1130 bits (2922), Expect = 0.000e+0 Identity = 758/1618 (46.85%), Postives = 916/1618 (56.61%), Query Frame = 1
Query: 1 AQSLVPPSIVELGRNSVLLSWRATLGQCSIRTDNPEECTDSQEWDNLAEANERHRLRQQHGVNHGSQARSEASRVDVFEVDRVELQTCCGCPRCVYGQEEGQQREEDTCVEGRAYVCLCCSHARRGLGCWRSVYQGPDSRCRVNLSHGNALHYFRVLVRARLPSPDMRGFMRPQRAKFLGAALTTSRVFEQSKNRGMFSGRAPPDRLSPNRRTRRRESGYYPGVAIVNSSDQDEEIYPVCSPTAAPDCPRVTAGGVGAFP------GSPSRGGGGIGGSPTTCHNDPKAFGAGEDVVWFGSDPVFVDSCPPPVTLHGIGTALVLTWPALSGFSGEERVSYILEQRAHAQTPPTPSTRWSNFQLDHRCSGELGGL---PQSRRRQHNRRPDQEPPKHADAKEFFSVGTRCWFMPNGLKVAMRYWYRLRLGHEGGKSVGGPWVSHMTSITPPRCIHVECRALLLSLPRAIDDGVCSGRRDDGREQGVL-----------KSCEQLQTECAKQLSAANTERDH-----SNSQHLGGR--PGEGSDSDVEGAGKVQ----TTQRRKSDGCQKAA-PMIWYTLEGLD-KGARWIVLYRGSASEVMVK-------------------------------------------GLQPNTRVKFRVGIDVDITELRHRSLRPLAFLELEPPPPII-------------ASPTNDSESAAASSGWLSHIQTPPSEKNSSPSCSSFVRPALRLKAAAASRTLIRNRPSGQRRAGTEDGRLERRRQSPSPATSPTVSQMKQQGFRFHDLAATVGGGFYPERPLLSWSRLQGHRDGAVWEFCARDGGSEGSEPQYREVSAVGEFSTASLPPRFAAFVVCGILQVKLWWTKPPCDPYHTGVVPSCRIRPATAHPXXXXXXTAFTTASHRENHRPTPSGVLGSLPPFQDRPSTAAEAARRPEVGVAASYGTGAPPSIQQNPSFTLNALVPAVDG-RDATWRSVYSGPRLWADLSRSPPPSSESGADILPVLAPSTAYCVRLSRKTGVSQPESVVEGVVVTAPPAPGIELAAVAETAVSPAAAAGEGVGEVVLKAVWRTGIDESFLPDGFGPLEWSIALEMAQACEAGPAAGGVGGTATKIAQLLPSEQRAPQAASLRGTATSVAAIDLRTDAASQNTMRTSSVSLEGPVRQDADMGQCWTLNSSSWGKPRKRTEGFRVVWSGG-GAAVAEGGLVEAPIPALAPGMRFAFRIRLECRFGVAVSAATVYQTALVAPVSPKGLRACLTTHESRAGNTSKCVRLLWDSFHPGHGKNVVTSFIVQARRPRNHSG-DQPPRGANHPHPPPILGHSWQDVCTCTEIGCLDPATLGVAHIAADYRVRAEGPGGKGPWCEPVRVDLHVPDDDSNDNFGVASEWSGGGGDASGVVSSLTFAAKE-DTANNERRPMGFVRPGARARDSLTGEARR-LWTKQRPLRVSPPPAVVATLVLQGAEVTARTIAAAEHRHRR--AGGSKQLLWGALASPRAARGCRVEAASKSTAAVPGNSGVRASNDSEGGGAGAMPGDGDTRQNGRWTRPVDEP-GARVEAE--------VVPVPHQLEQILRDQLDVSCCLGRDAASQSDSGVREG 4539
A+SL+PPSIVEL ++V+LSWRA +G+CSI+ +NP+ + SQEW NL E +H QH + G R V +F+VD VELQTCCGCPRC++ +E Q ED ++GRA CLCCS AR G GCWR VYQGP + CRV L GN +H+FR+LVRARLP P+MR FMRP+ G+ TS Q + G PD P+RR +RR + Y + V+ D + SP A R TAGG A S RGG G+ S T ++ +A A VWF SD VFVDS PP VTLHGIGTALVLTWPAL+G +G E+VSYILEQ + A TPS ++ + D EL G P+ RR HN R PPK D KE F+VGTRCWFMP GLK MRYWYRL L HEGGK VGG WVS+ TS+ PPRCI + RAL+LSLPRA+DD SG + +++ KS E L T + + + + +H + Q LG R P + E G + TT + + G +K PM+WYTLEG + RW+ LYRG + EV+V+ GL+P+ V+FR+GIDVDITELRHRSL PLA LELEP P + A+PT ES L +T S+ SP+ S+ VRPALRLK+AA + R G T+ GR R SPATSP S+M+++GF FHD +ATVGGGFY ERPLLSW RLQ H GA+WE CA G+ G Q RE SA EF+TA L PR+AAFVV QVKLWW +P D + PS +RP++A P T A R +HR +L Q+ P R + VA + P QQ+P FT+ L PA DG R VYSGP+ W L R P S SGA + LAPSTA+ V L SQPES V+ VVVTAPPAP +E AVA + + A A GE G V LKA WRT ID+ +LP G SIALEMA EAG +A GVG TA K AQ A+S R A + A + + S NT+R SS + + PVR DA GQ WTL SSSWG+ R E F +VW G G A E G+VEA +P L PGMRF FR+R+EC FGVAVSA+TVY+TA VAP+SPKGLRACLTTHESRAGN S+CVRL WD+FHPGHG NVVTSF VQARR R S DQ R ANHPHPPP H WQDV +C EIGCLDPATLGV H+ ADYRVRAEGPGGKGPWCEP+RVDL V +D + ++S VSS+TFAA E + ++ R+PM FVRPGARARD LTGEARR LW QRPL+V AGGS QLLWGALASPRAARGCRVE S AA PG + V N + GG D +N R + E G R A V +PH+L +LR++LDVS LG D A +S R G
Sbjct: 18 AKSLLPPSIVELNSDNVVLSWRAAIGRCSIQVENPDNISASQEWANLDEDTRKH----QHDAD-GWVKRF--GGVKLFDVDHVELQTCCGCPRCLHEGDENGQENEDGDIKGRACSCLCCSSARCGRGCWRPVYQGPHNHCRVQLVQGNRMHFFRLLVRARLPPPNMRNFMRPKNGVVSGSDPDTSGGVMQPNDGGS------PDLSLPDRRRQRRRNEYS-RIPTVSCCDPEAVTLLSSSPALARGGSRSTAGGGDAHACYRSSGRSQQRGGVGVSLS-TPLGDESRATTAAGKNVWFVSDSVFVDSRPPAVTLHGIGTALVLTWPALAGLTGGEQVSYILEQWSQATATMTPSVNRTSPRTDQGVPAELDGRQKSPRGHRRHHNHRRHLAPPKQVDLKEAFAVGTRCWFMPTGLKTGMRYWYRLSLIHEGGKGVGGMWVSYSTSVIPPRCIGMTSRALVLSLPRALDDTARSGSEGESQDRRNSPDRQHHADHNNKSDEHLPTPRDENRLSVDNDAEHLEALEMDGQRLGTRNLPTGSAGDKTEKHGNAEDVGVTTNQHPNGGEEKIEQPMVWYTLEGFSVEEKRWVALYRGPSPEVVVEVQKTTFDVETHLAHLPLLPMLQRSIRLPVDVYRNAGVPPLTQQGLEPSALVRFRLGIDVDITELRHRSLGPLASLELEPTSPDVFGFAATAVAPVAAAAPTTCGES-------LCPKRTQRSQTCPSPARSAVVRPALRLKSAAEATNQTRPIGHGASNPKTDLGR---NRWQWSPATSPAASKMRREGFAFHDASATVGGGFYLERPLLSWGRLQCHSGGAMWECCAIGAGA-GEGGQCREYSACVEFATAPLAPRYAAFVVGESPQVKLWWAEPKPD-LESSTAPSAFVRPSSAPPFA-------TPARGRGSHRL-------ALVEAQESPPG------RQSISVAVGDRSAVSPYAQQHPLFTVTLLEPATDGDHPPLRRRVYSGPQQWLGLGRYPEFLSASGAGVFAELAPSTAFAVGLCTNATDSQPESEVQAVVVTAPPAPVMEPIAVANNSAA-AEAEGEVFGAVTLKATWRTDIDQRYLPAGIDLPPLSIALEMAHVSEAGLSARGVGQTAAKGAQ------NGQHASSPRTAALATATVAV--SPTSPNTVRPSSGTRDIPVRTDAGFGQSWTLGSSSWGRLRSWAEEFEIVWRGEEGGAGKEKGVVEAQLPPLPPGMRFLFRVRVECPFGVAVSASTVYETARVAPLSPKGLRACLTTHESRAGNISRCVRLFWDAFHPGHGINVVTSFTVQARRLRPSSPEDQVTRDANHPHPPPTPAHPWQDVSSCPEIGCLDPATLGVPHVLADYRVRAEGPGGKGPWCEPLRVDLLVQEDTPRNGLCLSSGXXXXXXXXXXAVSSVTFAAAEQEKRHSGRQPMDFVRPGARARDPLTGEARRRLWANQRPLKVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGGSNQLLWGALASPRAARGCRVERTLSSRAA-PGAAEVSGFNSAISGG--------DDPENSRGPKTEGEHVGPRSRARGGRGERLAVAAMPHELALLLREELDVSRRLGCDEAGPWESEGRGG 1570
BLAST of mRNA_H-canaliculatus_F_contig1434.3396.1 vs. uniprot
Match: D7FTP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP8_ECTSI) HSP 1 Score: 1081 bits (2795), Expect = 0.000e+0 Identity = 730/1573 (46.41%), Postives = 877/1573 (55.75%), Query Frame = 1
Query: 1 AQSLVPPSIVELGRNSVLLSWRATLGQCSIRTDNPEECTDSQEWDNLAEANERHRLRQQHGVNHGSQARSEASRVDVFEVDRVELQTCCGCPRCVY-GQEEGQQREEDTCVEGRAYVCLCCSHARRGLGCWRSVYQGPDSRCRVNLSHGNALHYFRVLVRARLPSPDMRGFMRPQRAKFLGAALTTSRVFEQSKNRGMFSGRAPPDRLSPNRRTRRRESGYYPGVAIVNSSDQDEEIYPVCSPTAAPDCPRVTAGG--VGAFPGSPSRGG--GGIGGSPTTCHNDP-KAFGAGEDVVWFGSDPVFVDSCPPPVTLHGIGTALVLTWPALSGFSGEERVSYILEQRAHAQTPPTPSTRWSNFQLDHRCSGELGGLPQSRRRQHNRRPDQE---PPKHADAKEFFSVGTRCWFMPNGLKVAMRYWYRLRLGHEGGKSVGGPWVSHMTSITPPRCIHVECRALLLSLPRAIDDGVCSGRRDDGREQGVLKSCEQLQTECAKQLSAANTERDHSNSQHLGGRPGEGSDSDVEGAGKVQTTQRRKSDGCQKAAPMIWYTLEG-LDKGARWIVLYRGSASEVMVKGLQPNTRVKFRVGIDVDITELRHRSLRPLAFLELEPPPP--IIASPTNDSESAAASSGW----LSHIQTPPSEKNSSPSCSSFVRPALRLKAAAASRTLIRNRPSGQRRAGTEDGRLERRRQSPSPATSPTVSQMKQQGFRFHDLAATVGGGFYPERPLLSWSRLQGHRDGAVWEFCARDGGSEGSEPQYREVSAVGEFSTASLPPRFAAFVVCGILQVKLWWTKPPCDPYHTGVVPSCRIRPATAHPXXXXXXTAFTTASHRENHRPTPSGVLGSLPPFQDRPSTAAEAARRPEVGVAASYGTGAPPSIQQNPSFTLNALVPAVDGRDATWRSVYSGPRLWADLSRSPPPSSESGADILPVLAPSTAYCVRLSRKTGVSQPESVVEGVVVTAPPAPGIELAAVAETAVSPAAAAGEGVGEVVLKAVWRTGIDESFLPDGFGPLEWSIALEMAQACEAGPAAGGVGGTATKIAQLLPSEQRAPQAASLRGTA---TSVAAIDLRT-DAASQNTMRTSSVSLEGPVRQDADMGQCWTLNSSSWGKPRKRTEGFRVVWSGG-GAAVAEGGLVEAPIPALAPGMRFAFRIRLECRFGVAVSAATVYQTALVAPVSPKGLRACLTTHESRAGNTSKCVRLLWDSFHPGHGKNVVTSFIVQARRPRNHSG-DQPPRGANHPHPPPILGHSWQDVCTCTEIGCLDPATLGVAHIAADYRVRAEGPGGKGPWCEPVRVDLHVPDDDSNDNFGVASEWSGGGG-------------DASGVVSSLTF-AAKEDTANNERRPMGFVRPGARARDSLTGEARR-LWTKQRPLRVSPPPAVVATLVLQGAEVTART--IAAAEHRHRRAGGSKQLLWGALASPRAARGCRVEAASKSTAAVPGNSGVRASNDSEGGGAGAMPGDGDTRQNGRWTRPVDEP-GARVEAE--------VVPVPHQLEQILRDQLDVSCCLGRDAASQSDSGVREGGLRDAGAVLPEY 4575
++SL+PPSIVEL R+SV+LSWRA LG+CSI +NP+ ++SQEW NL E H QH + GS +S V +F+VD VELQTCCGCPRC++ G E Q+ E +EGRA C CCS AR G GCWR VYQGP ++CRV L GN +H+FR+LVRARLP P MR +MRP+ LG+ TS Q + G D SPNRR +RR++ Y G+ V D +E SP A TAGG V A SP RG GG+G S +T D +A A VWF SD VFVDS PP VTLHGIGTALVLTWPAL+G SG E++SYILEQ + A T PTP ++ + D EL G P+SRR PPK D KE F+VGTRCWFMP GLK MRYWYRL L H+GGK VGG WVS+ TS+ PPRC+ + RAL+LSLPRA+DD SG + + + L+T SA + ++ +++ +G V T Q + + PM+WYTLEG L + RW+ LYRG + EV+V+GL+P+T V+FR+GIDVDITELRHRSL PLA LELEP P + + T + +AAA+ L +T + SP+ + VRPALRLK+ A ++ + + G R T+ GR R SPA SP S+M+++GF FHD ATVGGGFY ERPLLSW RLQ H S+G E R R YSG R W L R P S +GA + LA STA+ V L K SQPES V+ VVVTAPPAP +E AVA + + A A GE G V LKA WRT ID+ LP G IALEMA EAG +A GVG TA K++Q Q AS GTA T+ A +D R S NT R SS + PVR DA GQ WTL SSSWG+ R R E F +VW G G A E G+VEA P L PGMRF FR+R+ECRFGVAVSA+TVY+TA V P+SPKGLRACL THESRAGNTS+CVRLLWD+FHPGHGKNV+TSF VQARRPR S DQ R ANHPHPPP H WQ VC+C EIGCLDPATLGV H+ ADYRVRAEGPGGKGPWCEP+RVDL V +D + + S GG ++SG VSS+TF AAK++ ++ R+PM FVRPGARARD LTGEARR LW QRPL+V PPPA VATLVL GA VTART A AEHR R AGGS QLLWGALASPRAARGCRVE S AA PG +GV N + GG D +N R + E G R A V +PH+L +LR++LDVS LG D A +S R GG D+ P++
Sbjct: 27 SKSLLPPSIVELNRDSVVLSWRAALGKCSIHAENPDNISESQEWANLDEDTRNH----QHAAD-GSAKKS--GDVKIFDVDHVELQTCCGCPRCLHEGDENNQKDEGGGSLEGRACSCRCCSSARCGRGCWRPVYQGPHNQCRVQLVQGNKMHFFRLLVRARLPPPSMRNYMRPKSGVVLGSDPDTSGGVMQPNDGGSH------DLTSPNRRRQRRQNEYS-GIPTVTCCDPEEVTLWSGSPALAHGGSCSTAGGGDVHACDRSPGRGQQRGGVGVSLSTPLGDESRATTAAGKSVWFVSDSVFVDSRPPAVTLHGIGTALVLTWPALAGLSGGEQISYILEQWSQATTTPTPFLNRTSPRTDQGAPSELDGRPKSRRGHXXXXXXXXHLAPPKQVDLKEAFAVGTRCWFMPTGLKTGMRYWYRLSLIHDGGKGVGGKWVSYSTSVAPPRCVGMTSRALVLSLPRALDDAARSGSEE--HLEAPEMDGQPLETRSLPTGSAGDKTEEYGDAEDVG----------------VTTNQHPNGEEEKIEQPMVWYTLEGFLVEEKRWVALYRGPSPEVVVEGLEPSTLVRFRLGIDVDITELRHRSLGPLASLELEPTSPDAVGVAATAAAPAAAAAPTTCGENLCPKRTQLGQACPSPTRTVVVRPALRLKSTAEAKKSVGH---GARNPKTDLGR---NRWQWSPAKSPAASKMRREGFAFHDATATVGGGFYLERPLLSWGRLQCH--------------SDGEETPIR---------------------------------------------------------------------------------------------------------------------------------------------RQAYSGLRQWLGLGRYPEFFSANGAGVCAELATSTAFAVGLCTKATDSQPESEVQAVVVTAPPAPVMEPIAVANDSAA-AEAEGEVFGAVTLKATWRTDIDQRHLPAGIDLPPLLIALEMAHIPEAGLSARGVGETAAKVSQN-------GQQASSPGTAALTTATATVDGRAVSPTSPNTARPSSGTQNIPVRTDAGFGQSWTLGSSSWGRSRSRAEEFEIVWRGEEGGAGTEKGVVEAQSPPLPPGMRFLFRVRVECRFGVAVSASTVYETAPVVPLSPKGLRACLATHESRAGNTSRCVRLLWDAFHPGHGKNVITSFTVQARRPRPSSPEDQVTRDANHPHPPPTPAHPWQVVCSCPEIGCLDPATLGVPHVLADYRVRAEGPGGKGPWCEPLRVDLLVQEDTPRNGLCLPS---GGXXXXXXXXXXXXXXCESSGAVSSVTFVAAKQEKRHSGRQPMDFVRPGARARDPLTGEARRRLWVNQRPLKVPPPPAAVATLVLPGAVVTARTRTTAMAEHRCRLAGGSNQLLWGALASPRAARGCRVEGTLSSRAA-PGAAGVSGFNRAISGG--------DDPENSRGPKTEGEHVGPRSPARGGRGERLAVAAMPHELALLLREELDVSRRLGCDEAGPWESEGR-GGAVDSETRKPQW 1385 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1434.3396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1434.3396.1 >prot_H-canaliculatus_F_contig1434.3396.1 ID=prot_H-canaliculatus_F_contig1434.3396.1|Name=mRNA_H-canaliculatus_F_contig1434.3396.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=1620bp AQSLVPPSIVELGRNSVLLSWRATLGQCSIRTDNPEECTDSQEWDNLAEAback to top mRNA from alignment at H-canaliculatus_F_contig1434:13926..20901- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1434.3396.1 ID=mRNA_H-canaliculatus_F_contig1434.3396.1|Name=mRNA_H-canaliculatus_F_contig1434.3396.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6976bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1434:13926..20901- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1434:13926..20901- >mRNA_H-canaliculatus_F_contig1434.3396.1 ID=mRNA_H-canaliculatus_F_contig1434.3396.1|Name=mRNA_H-canaliculatus_F_contig1434.3396.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=9720bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1434:13926..20901- (Hapterophycus canaliculatus Oshoro5f female)back to top |