mRNA_H-canaliculatus_F_contig14333.3391.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14333.3391.1
Unique NamemRNA_H-canaliculatus_F_contig14333.3391.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14333.3391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14333contigH-canaliculatus_F_contig14333:662..1186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size525
Cds size345
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929181.807447-CDS-H-canaliculatus_F_contig14333:661..10061622929181.807447-CDS-H-canaliculatus_F_contig14333:661..1006Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14333 662..1006 +
1696845709.942585-CDS-H-canaliculatus_F_contig14333:661..10061696845709.942585-CDS-H-canaliculatus_F_contig14333:661..1006Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14333 662..1006 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929181.8169086-UTR-H-canaliculatus_F_contig14333:1006..11861622929181.8169086-UTR-H-canaliculatus_F_contig14333:1006..1186Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14333 1007..1186 +
1696845709.9528368-UTR-H-canaliculatus_F_contig14333:1006..11861696845709.9528368-UTR-H-canaliculatus_F_contig14333:1006..1186Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14333 1007..1186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14333.3391.1prot_H-canaliculatus_F_contig14333.3391.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14333 662..1006 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14333.3391.1

>prot_H-canaliculatus_F_contig14333.3391.1 ID=prot_H-canaliculatus_F_contig14333.3391.1|Name=mRNA_H-canaliculatus_F_contig14333.3391.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=115bp
MPAGLPVCWAGRSKDAELLSCCQLPNQTHAQQSLDGVVLCENPGETACCP
RNFPTKRCTARPCLLGGTARPVLRNVSYFCACLLPQKPSERHLILCRSSS
SQKSAVFDDQDKQV*
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mRNA from alignment at H-canaliculatus_F_contig14333:662..1186+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14333.3391.1 ID=mRNA_H-canaliculatus_F_contig14333.3391.1|Name=mRNA_H-canaliculatus_F_contig14333.3391.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=525bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14333:662..1186+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCTGCGGGGCTGCCTGTTTGCTGGGCCGGCCGTTCTAAGGATGCTGA
GTTGTTGAGCTGCTGTCAGCTACCAAACCAAACCCACGCACAGCAGTCAC
TTGATGGTGTTGTTTTGTGCGAAAACCCCGGGGAGACGGCGTGTTGTCCC
CGAAATTTCCCGACAAAGCGTTGTACAGCGCGGCCATGTCTTCTCGGAGG
AACCGCGAGACCAGTGTTACGGAACGTGTCGTATTTTTGTGCTTGTCTCC
TACCTCAGAAGCCGTCAGAACGACATTTGATCCTCTGTAGGTCTTCCTCT
TCCCAAAAAAGTGCTGTTTTCGACGACCAGGACAAGCAAGTTTGAGACAC
CCCCACACGCGGGACCGAAACAATGGTTTGTGTTATAAAGAGCCTGTTGT
ATCCCTGGAAATCAAATGGGGGAAAAGGGGCTTCGCCGCTCGCTCGGCGC
ATAAAAAATCTATTTTACTGCTGCTCTGTAGGAGTATTTATTAGTCACGC
GAAGAGCACGCTTCCCGGTCGCAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14333:662..1186+

>mRNA_H-canaliculatus_F_contig14333.3391.1 ID=mRNA_H-canaliculatus_F_contig14333.3391.1|Name=mRNA_H-canaliculatus_F_contig14333.3391.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=690bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14333:662..1186+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCTGCGGGGCTGCCTGTTTGCTGGGCCGGCCGTTCTAAGGATGCTGA
GTTGTTGAGCTGCTGTCAGCTACCAAACCAAACCCACGCACAGCAGTCAC
TTGATGGTGTTGTTTTGTGCGAAAACCCCGGGGAGACGGCGTGTTGTCCC
CGAAATTTCCCGACAAAGCGTTGTACAGCGCGGCCATGTCTTCTCGGAGG
AACCGCGAGACCAGTGTTACGGAACGTGTCGTATTTTTGTGCTTGTCTCC
TACCTCAGAAGCCGTCAGAACGACATTTGATCCTCTGTAGGTCTTCCTCT
TCCCAAAAAAGTGCTGTTTTCGACGACCAGGACAAGCAAGTTTGAATGCC
TGCGGGGCTGCCTGTTTGCTGGGCCGGCCGTTCTAAGGATGCTGAGTTGT
TGAGCTGCTGTCAGCTACCAAACCAAACCCACGCACAGCAGTCACTTGAT
GGTGTTGTTTTGTGCGAAAACCCCGGGGAGACGGCGTGTTGTCCCCGAAA
TTTCCCGACAAAGCGTTGTACAGCGCGGCCATGTCTTCTCGGAGGAACCG
CGAGACCAGTGTTACGGAACGTGTCGTATTTTTGTGCTTGTCTCCTACCT
CAGAAGCCGTCAGAACGACATTTGATCCTCTGTAGGTCTTCCTCTTCCCA
AAAAAGTGCTGTTTTCGACGACCAGGACAAGCAAGTTTGA
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