mRNA_H-canaliculatus_F_contig14330.3390.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14330.3390.1
Unique NamemRNA_H-canaliculatus_F_contig14330.3390.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14330.3390.1 vs. uniprot
Match: A0A835YRX4_9STRA (Coatomer WD associated region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRX4_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.350e-40
Identity = 71/109 (65.14%), Postives = 88/109 (80.73%), Query Frame = 1 
Query:    4 VQVALQSGNIDSETGVDASFELVHTMTGKIRTGQWVGDCFLFTNE-GRLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIHSYRVRQAMLQYQVSPVRSSL 327
            V  AL  G +D+E GV+A+FELV  + G++RTGQWVG CFL+T++ GRLSYY+GGE MTLCHL+HPMYMLGYLPKEDRVYLMDK + I+SY+V Q+ LQYQ + VR   
Sbjct:  499 VAAALARGAVDAEEGVEAAFELVGEVAGRVRTGQWVGACFLYTSDAGRLSYYVGGEVMTLCHLDHPMYMLGYLPKEDRVYLMDKAKGIYSYKVLQSYLQYQTAVVRKDF 607
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BLAST of mRNA_H-canaliculatus_F_contig14330.3390.1 vs. uniprot
Match: A0A7S3HJI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJI1_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.070e-35
Identity = 62/110 (56.36%), Postives = 82/110 (74.55%), Query Frame = 1 
Query:    1 LVQVALQSGNIDSETGVDASFELVHTMTGKIRTGQWVGDCFLFTNE-GRLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIHSYRVRQAMLQYQVSPVRSSL 327
            +V  AL +GNI+ + GVD SFEL+ T   +  TGQWVG+CFL+TN  G+L+Y +GGE MTLCHL HPMY+LGY+PKEDR +L+DK  N+HSY++  +ML YQ + VR   
Sbjct:  502 VVGAALAAGNINPDEGVDGSFELLSTTNERAHTGQWVGECFLYTNSAGKLNYLVGGEVMTLCHLSHPMYLLGYVPKEDRAFLVDKTYNVHSYKLLLSMLSYQSAVVRQDF 611
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BLAST of mRNA_H-canaliculatus_F_contig14330.3390.1 vs. uniprot
Match: A0A4D9D3N3_9STRA (Coatomer_WDAD domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3N3_9STRA)

HSP 1 Score: 137 bits (345), Expect = 3.310e-35
Identity = 67/110 (60.91%), Postives = 83/110 (75.45%), Query Frame = 1 
Query:    4 VQVALQSGNIDSETGVDASFELVHTMTGKIRTGQWVGDCFLFTNEG-RLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIHSYRVRQAMLQYQVSPVRSSLS 330
            V VAL +G +  E GV+ SFEL+H ++ K+RTG WVGDCFL+TN   RL YY+GG+ MTLCHL+ P YMLGYL KE+RVYLMDKQ N+ SY+V  AMLQYQ + VR   +
Sbjct:  514 VAVALAAGQVGEE-GVEESFELLHELSDKVRTGMWVGDCFLYTNNTQRLQYYVGGQIMTLCHLDSPKYMLGYLAKENRVYLMDKQLNVVSYKVLLAMLQYQTAVVREDFA 622
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BLAST of mRNA_H-canaliculatus_F_contig14330.3390.1 vs. uniprot
Match: A0A7S2XXQ5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXQ5_9STRA)

HSP 1 Score: 136 bits (343), Expect = 6.170e-35
Identity = 64/110 (58.18%), Postives = 83/110 (75.45%), Query Frame = 1 
Query:    1 LVQVALQSGNIDSETGVDASFELVHTMTGKIRTGQWVGDCFLFTNEG-RLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIHSYRVRQAMLQYQVSPVRSSL 327
            LV   L  G +  E GVD SF+L+H ++ K+RTG WVGDCFL+T  G RL+YY+GG+ MTL HL+HPMY+LGYLPKEDRVYL+DKQ N  S++V Q++L+YQ + VR   
Sbjct:  497 LVNAELAKGEV-GEDGVDGSFDLLHEISDKVRTGYWVGDCFLYTTAGNRLNYYVGGKVMTLMHLDHPMYLLGYLPKEDRVYLVDKQTNFISFKVLQSVLEYQTAVVRKDF 605
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BLAST of mRNA_H-canaliculatus_F_contig14330.3390.1 vs. uniprot
Match: A0A7S2SR98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR98_9STRA)

HSP 1 Score: 134 bits (338), Expect = 2.900e-34
Identity = 60/109 (55.05%), Postives = 83/109 (76.15%), Query Frame = 1 
Query:    4 VQVALQSGNIDSETGVDASFELVHTMTGKIRTGQWVGDCFLFTN-EGRLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIHSYRVRQAMLQYQVSPVRSSL 327
            V  AL++  +  E GV+ SFEL+H +   ++TGQWVGDCFLFTN   RL+Y++GGE MTLCHL+H MYM+GYLPKEDRV+LMD  +N+ S+RV  ++L++Q + VR  +
Sbjct:  521 VATALETDAVSPEEGVEGSFELLHELADTVQTGQWVGDCFLFTNASNRLNYFVGGEIMTLCHLDHTMYMMGYLPKEDRVFLMDNARNVVSFRVLLSVLEFQTAVVRQDI 629
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BLAST of mRNA_H-canaliculatus_F_contig14330.3390.1 vs. uniprot
Match: A0A8K1CIQ5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIQ5_PYTOL)

HSP 1 Score: 131 bits (329), Expect = 4.760e-33
Identity = 63/107 (58.88%), Postives = 80/107 (74.77%), Query Frame = 1 
Query:    1 LVQVALQSGNIDSETGVDASFELVHTMTGKIRTGQWVGDCFLFTNEG-RLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIHSYRVRQAMLQYQVSPVR 318
            LV  AL +G    E GVD SFEL+H ++ K+ TG WVGDCFL+TN G RL+YY+GGE MTL HLE  +YMLGYLP+E+ V+LMDK +N++SY V   ML+YQ + VR
Sbjct:  498 LVAQALATGAHTPEEGVDGSFELLHEISEKVGTGSWVGDCFLYTNAGGRLNYYVGGEVMTLAHLEQKLYMLGYLPRENLVFLMDKMKNVYSYTVSLVMLEYQTAVVR 604
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BLAST of mRNA_H-canaliculatus_F_contig14330.3390.1 vs. uniprot
Match: A0A3R7J2Y3_9STRA (Coatomer subunit beta' n=31 Tax=Phytophthora TaxID=4783 RepID=A0A3R7J2Y3_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.440e-31
Identity = 60/107 (56.07%), Postives = 79/107 (73.83%), Query Frame = 1 
Query:    1 LVQVALQSGNIDSETGVDASFELVHTMTGKIRTGQWVGDCFLFTNEG-RLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIHSYRVRQAMLQYQVSPVR 318
            LV  A  +G   +E GVD +F+L+H ++ K+ TG WVGDCFL+TN G RL+YY+GGE MTL HLE  MY+LGYLP+E+ V+LMDK +N+ SY V   ML+YQ + VR
Sbjct:  500 LVAQAFAAGTNSAEEGVDGAFDLLHEISEKVGTGTWVGDCFLYTNAGGRLNYYVGGEVMTLAHLEQKMYLLGYLPRENLVFLMDKMKNVVSYTVSLVMLEYQTAVVR 606
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BLAST of mRNA_H-canaliculatus_F_contig14330.3390.1 vs. uniprot
Match: H3G6X8_PHYRM (Coatomer subunit beta' n=4 Tax=Peronosporaceae TaxID=4777 RepID=H3G6X8_PHYRM)

HSP 1 Score: 126 bits (317), Expect = 1.930e-31
Identity = 60/107 (56.07%), Postives = 78/107 (72.90%), Query Frame = 1 
Query:    1 LVQVALQSGNIDSETGVDASFELVHTMTGKIRTGQWVGDCFLFTNEG-RLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIHSYRVRQAMLQYQVSPVR 318
            LV  A  +G    E GVD +F+L+H ++ K+ TG WVGDCFL+TN G RL+YY+GGE MTL HLE  MY+LGYLP+E+ V+LMDK +N+ SY V   ML+YQ + VR
Sbjct:  500 LVAQAFAAGTNSPEEGVDGAFDLLHEISEKVSTGTWVGDCFLYTNAGGRLNYYVGGEVMTLAHLEQKMYLLGYLPRENLVFLMDKMKNVVSYTVSLVMLEYQTAVVR 606
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BLAST of mRNA_H-canaliculatus_F_contig14330.3390.1 vs. uniprot
Match: K3WFB2_GLOUD (Coatomer_WDAD domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFB2_GLOUD)

HSP 1 Score: 126 bits (317), Expect = 1.980e-31
Identity = 60/107 (56.07%), Postives = 79/107 (73.83%), Query Frame = 1 
Query:    1 LVQVALQSGNIDSETGVDASFELVHTMTGKIRTGQWVGDCFLFTNEG-RLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIHSYRVRQAMLQYQVSPVR 318
            +V  A  SG    + GVD +F+L+H ++ K+ TG WVGDCFL+TN G RL+YY+GGE MTL HLE  MYMLGYLP+E+ V+LMDK +N++SY V   ML+YQ + VR
Sbjct:  499 VVAQAFASGANSQDEGVDGAFDLLHEISEKVGTGTWVGDCFLYTNAGGRLNYYVGGEVMTLAHLEMKMYMLGYLPRENLVFLMDKMKNVYSYMVSLVMLEYQTAIVR 605
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BLAST of mRNA_H-canaliculatus_F_contig14330.3390.1 vs. uniprot
Match: G4YSK7_PHYSP (Coatomer_WDAD domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YSK7_PHYSP)

HSP 1 Score: 126 bits (316), Expect = 2.600e-31
Identity = 60/107 (56.07%), Postives = 78/107 (72.90%), Query Frame = 1 
Query:    1 LVQVALQSGNIDSETGVDASFELVHTMTGKIRTGQWVGDCFLFTNEG-RLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIHSYRVRQAMLQYQVSPVR 318
            LV  A  +G    E GVD +F+L+H ++ K+ TG WVGDCFL+TN G RL+YY+GGE MTL HLE  MY+LGYLP+E+ V+LMDK +N+ SY V   ML+YQ + VR
Sbjct:  461 LVAQAFAAGTNSPEEGVDGAFDLLHEISEKVGTGTWVGDCFLYTNAGGRLNYYVGGEVMTLAHLEQKMYLLGYLPRENLVFLMDKMKNVVSYTVSLVMLEYQTAVVR 567
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14330.3390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRX4_9STRA1.350e-4065.14Coatomer WD associated region-domain-containing pr... [more]
A0A7S3HJI1_9STRA2.070e-3556.36Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A4D9D3N3_9STRA3.310e-3560.91Coatomer_WDAD domain-containing protein n=2 Tax=Mo... [more]
A0A7S2XXQ5_9STRA6.170e-3558.18Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2SR98_9STRA2.900e-3455.05Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A8K1CIQ5_PYTOL4.760e-3358.88Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R7J2Y3_9STRA1.440e-3156.07Coatomer subunit beta' n=31 Tax=Phytophthora TaxID... [more]
H3G6X8_PHYRM1.930e-3156.07Coatomer subunit beta' n=4 Tax=Peronosporaceae Tax... [more]
K3WFB2_GLOUD1.980e-3156.07Coatomer_WDAD domain-containing protein n=1 Tax=Gl... [more]
G4YSK7_PHYSP2.600e-3156.07Coatomer_WDAD domain-containing protein (Fragment)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14330contigH-canaliculatus_F_contig14330:1326..2535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue1.9e-27
Seed eggNOG ortholog115417.EPrPW00000017473
KEGG koko:K17302
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0008104,GO:0008150,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098796,GO:0098805
EggNOG free text desc.Coatomer subunit beta'. Source PGD
EggNOG OGs1MFE1@121069,KOG0276@1,KOG0276@2759
COG Functional cat.U
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size354
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929181.7466967-CDS-H-canaliculatus_F_contig14330:1325..14631622929181.7466967-CDS-H-canaliculatus_F_contig14330:1325..1463Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14330 1326..1463 +
1696845709.9147694-CDS-H-canaliculatus_F_contig14330:1325..14631696845709.9147694-CDS-H-canaliculatus_F_contig14330:1325..1463Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14330 1326..1463 +
1622929181.7650077-CDS-H-canaliculatus_F_contig14330:2319..25351622929181.7650077-CDS-H-canaliculatus_F_contig14330:2319..2535Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14330 2320..2535 +
1696845709.9319043-CDS-H-canaliculatus_F_contig14330:2319..25351696845709.9319043-CDS-H-canaliculatus_F_contig14330:2319..2535Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14330 2320..2535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14330.3390.1prot_H-canaliculatus_F_contig14330.3390.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14330 1326..2535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14330.3390.1

>prot_H-canaliculatus_F_contig14330.3390.1 ID=prot_H-canaliculatus_F_contig14330.3390.1|Name=mRNA_H-canaliculatus_F_contig14330.3390.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=118bp
LVQVALQSGNIDSETGVDASFELVHTMTGKIRTGQWVGDCFLFTNEGRLS
YYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIHSYRVRQAMLQY
QVSPVRSSLSGGVRGGG*
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mRNA from alignment at H-canaliculatus_F_contig14330:1326..2535+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14330.3390.1 ID=mRNA_H-canaliculatus_F_contig14330.3390.1|Name=mRNA_H-canaliculatus_F_contig14330.3390.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1210bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14330:1326..2535+ (Hapterophycus canaliculatus Oshoro5f female)
CTTGTGCAGGTGGCCCTCCAGAGCGGCAACATCGACAGCGAGACCGGCGT
CGACGCTTCGTTCGAGCTGGTGCACACGATGACCGGCAAGATCCGCACGG
GGCAGTGGGTCGGCGACTGCTTCCTCTTCACCAACGAGGTGACGTACCCC
CCTCCCCCCCCTTCCCCCTCCGGCCGCAGCTGCAGCTTGGGCGTCACGGG
GATGGCCACCGACCGCGACCCGTTTGTGCTTTCTCGTCGTCCGGTGGTGC
TCCTTTGGCGCCCAAGTCTCGCGTCTGGCGAGACGGGAGGCACGAGTGCG
CAGAATTGCCTGTCTTGGCACTGGTTCCGTTTCGCCGATGATATGGCGTG
CCCCCCCCCTCCCAGCTGCGGTGTCGCGGCAGTGGCCACAAGACCAACCC
GCTCGTGCTTTGTTGTTTTCGGTAGAGGCGGAAGGCTGCGGGAGTCTCGT
CGCCAAGTCCTGCGAGGCACGGTATATACGAGGGTGCATGAGTGTCTGTT
TCGGCCCTGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGCT
GCCGCTGCCGCTGCTGCTGCTGCTGCTGCGTTCTTCCCTCTTTTCGTCGG
AAGGGCGACGACCTTCTTTTTTCGAGTGCCGTGTCTCAGTCCACGGGGAA
TCGCGGAGTAAGGTCGCAACCTTGGACAAGAAAAACGCCACAACACCGTT
GAAACACCTCGTAGGGTACGTCGTGCGAGGCGTAGCTCGAGGCTAATGTT
GGAGCTCCAAGCCATTTTGAGGGTTCATTGGTCTGCAAGGTTGGGACAAG
AGCATGGTGATCATGTTTTTTCTTTCCCTAGGTCGTGGCGCGCGTGTAGC
TAGTGCGCGGCAATCGGGTTAACGATTTTCTTGGCGGGGGCGGGGGAGCT
ACCTCTACGCGTCCACCGCTCGCATGGCGCTCGTCGAACCGACGGCCAAC
CTCGAAGCTGGCTCGATTCGTGTTTGTCCTTTTTGCTCCGGCAGGGGCGG
TTGAGCTACTACATCGGCGGGGAGACCATGACCCTCTGCCACCTGGAGCA
CCCCATGTACATGCTGGGGTACCTCCCGAAGGAGGACAGGGTGTACCTCA
TGGACAAGCAGCAGAACATCCACAGCTACCGCGTGCGACAGGCGATGCTG
CAGTACCAGGTGAGTCCGGTCCGTTCGTCGCTGTCCGGTGGTGTCAGAGG
GGGCGGCTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14330:1326..2535+

>mRNA_H-canaliculatus_F_contig14330.3390.1 ID=mRNA_H-canaliculatus_F_contig14330.3390.1|Name=mRNA_H-canaliculatus_F_contig14330.3390.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=708bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14330:1326..2535+ (Hapterophycus canaliculatus Oshoro5f female)
CTTGTGCAGGTGGCCCTCCAGAGCGGCAACATCGACAGCGAGACCGGCGT
CGACGCTTCGTTCGAGCTGGTGCACACGATGACCGGCAAGATCCGCACGG
GGCAGTGGGTCGGCGACTGCTTCCTCTTCACCAACGAGCTTGTGCAGGTG
GCCCTCCAGAGCGGCAACATCGACAGCGAGACCGGCGTCGACGCTTCGTT
CGAGCTGGTGCACACGATGACCGGCAAGATCCGCACGGGGCAGTGGGTCG
GCGACTGCTTCCTCTTCACCAACGAGGGGCGGTTGAGCTACTACATCGGC
GGGGAGACCATGACCCTCTGCCACCTGGAGCACCCCATGTACATGCTGGG
GTACCTCCCGAAGGAGGACAGGGTGTACCTCATGGACAAGCAGCAGAACA
TCCACAGCTACCGCGTGCGACAGGCGATGCTGCAGTACCAGGTGAGTCCG
GTCCGTTCGTCGCTGTCCGGTGGTGTCAGAGGGGGCGGCTAGGGGCGGTT
GAGCTACTACATCGGCGGGGAGACCATGACCCTCTGCCACCTGGAGCACC
CCATGTACATGCTGGGGTACCTCCCGAAGGAGGACAGGGTGTACCTCATG
GACAAGCAGCAGAACATCCACAGCTACCGCGTGCGACAGGCGATGCTGCA
GTACCAGGTGAGTCCGGTCCGTTCGTCGCTGTCCGGTGGTGTCAGAGGGG
GCGGCTAG
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