mRNA_H-canaliculatus_F_contig14329.3387.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14329.3387.1
Unique NamemRNA_H-canaliculatus_F_contig14329.3387.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14329.3387.1 vs. uniprot
Match: D8LIL3_ECTSI (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIL3_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 3.320e-25
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    1 SRFWMTLNTEGTAPIPRDSHVSVIHGQSMYVFGGSTGSAMNDFHELRL 144
            SRFWMTLNTEGTAPIPRDSHVSVIHGQSMYVFGGSTGSAMNDFHELRL
Sbjct:  222 SRFWMTLNTEGTAPIPRDSHVSVIHGQSMYVFGGSTGSAMNDFHELRL 269
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BLAST of mRNA_H-canaliculatus_F_contig14329.3387.1 vs. uniprot
Match: A0A2P4XDD4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XDD4_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 6.010e-15
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 SRFWMTLNTEGTAPIPRDSHVSVIHGQSMYVFGGSTGSAMNDFHELRL 144
            SR W  L TEG API RDSHV+VIH  SMY+FGGSTG+A+NDF+EL L
Sbjct:  186 SRVWSLLATEGQAPIARDSHVAVIHLNSMYIFGGSTGTAVNDFYELNL 233
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BLAST of mRNA_H-canaliculatus_F_contig14329.3387.1 vs. uniprot
Match: H3GM83_PHYRM (BTB domain-containing protein n=19 Tax=Peronosporaceae TaxID=4777 RepID=H3GM83_PHYRM)

HSP 1 Score: 69.3 bits (168), Expect = 1.440e-12
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 SRFWMTLNTEGTAPIPRDSHVSVIHGQSMYVFGGSTGSAMNDFHE 135
            +  W  L TEG API RDSHV+VIH  +MY+FGGSTG+A+NDF+E
Sbjct:  202 THVWSLLQTEGPAPIARDSHVAVIHSDAMYIFGGSTGTAVNDFYE 246
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BLAST of mRNA_H-canaliculatus_F_contig14329.3387.1 vs. uniprot
Match: A0A7S3L5X6_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L5X6_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 5.260e-12
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   10 WMTLNTEGTAPIPRDSHVSVIHGQSMYVFGGSTGSAMNDFHELRL 144
            W +L  +G  PIPRDSHV+V H  S+YVFGGS+G+A+ND HEL+L
Sbjct:  311 WSSLAMDGVPPIPRDSHVAVTHANSIYVFGGSSGAALNDLHELQL 355
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BLAST of mRNA_H-canaliculatus_F_contig14329.3387.1 vs. uniprot
Match: A0A1E7FQW9_9STRA (Galactose oxidase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQW9_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.230e-10
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 SRFWMTLN--TEGTAPIPRDSHVSVIHGQSMYVFGGSTGSAMNDFHELRL 144
            +R W  L+  +    PIPRDSH++V H  SMY+FGGSTGSAM+D +EL+L
Sbjct:  231 NRVWSPLSIASGSNTPIPRDSHIAVTHSNSMYIFGGSTGSAMDDLYELQL 280
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BLAST of mRNA_H-canaliculatus_F_contig14329.3387.1 vs. uniprot
Match: A0A4D9CMR4_9STRA (BTB domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMR4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.710e-10
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 SRFWMTLNTEGTAP----IPRDSHVSVIHGQSMYVFGGSTGSAMNDFHELRL 144
            S  W  L+   +AP    +PRDSH +VIH +SMY+FGGSTG+AM+D HEL L
Sbjct:  414 SATWTLLDLSPSAPYPPPLPRDSHSAVIHHESMYIFGGSTGNAMDDLHELNL 465
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BLAST of mRNA_H-canaliculatus_F_contig14329.3387.1 vs. uniprot
Match: A0A7S4AVJ9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AVJ9_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 7.800e-10
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 SRFWMTLNTEGTAPIPRDSHVSVIHGQSMYVFGGSTGSAMNDFHELRL 144
            +R W  L TEG+  IPRDSH++V H   MYVFGGS+G+A+ND +EL+L
Sbjct:  300 NRSWSPLVTEGSI-IPRDSHIAVTHSNYMYVFGGSSGNALNDLYELQL 346
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BLAST of mRNA_H-canaliculatus_F_contig14329.3387.1 vs. uniprot
Match: A0A448YYD3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYD3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.410e-9
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 SRFWMTLNTEGTAPIPRDSHVSVIHGQSMYVFGGSTGSAMNDFHELRL 144
            +R W  L TEG+  +PRDSH+++ H   MY+FGGS+G+A+ND +EL L
Sbjct:  315 NRVWSPLVTEGSV-VPRDSHIAISHSNCMYIFGGSSGNALNDLYELHL 361
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BLAST of mRNA_H-canaliculatus_F_contig14329.3387.1 vs. uniprot
Match: A0A7S4VS83_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VS83_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.720e-9
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:   34 TAPIPRDSHVSVIHGQSMYVFGGSTGSAMNDFHELRL 144
            T PIPRDSHV+V+   +M+VFGGSTGSAMND +EL+L
Sbjct:  299 TMPIPRDSHVAVVWNDTMFVFGGSTGSAMNDLYELKL 335
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BLAST of mRNA_H-canaliculatus_F_contig14329.3387.1 vs. uniprot
Match: A0A7J6QQE6_PEROL (Uncharacterized protein (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6QQE6_PEROL)

HSP 1 Score: 57.0 bits (136), Expect = 4.410e-9
Identity = 23/43 (53.49%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   16 TLNTEGTAPIPRDSHVSVIHGQSMYVFGGSTGSAMNDFHELRL 144
            +L+++   P PRDSH++ ++G SMYVFGGSTG+A ND +E  L
Sbjct:   41 SLSSKVPPPTPRDSHIAAVYGDSMYVFGGSTGTARNDLYEFNL 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14329.3387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIL3_ECTSI3.320e-25100.00BTB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A2P4XDD4_9STRA6.010e-1570.83Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
H3GM83_PHYRM1.440e-1264.44BTB domain-containing protein n=19 Tax=Peronospora... [more]
A0A7S3L5X6_9STRA5.260e-1262.22Hypothetical protein n=2 Tax=Amphora coffeiformis ... [more]
A0A1E7FQW9_9STRA2.230e-1056.00Galactose oxidase n=1 Tax=Fragilariopsis cylindrus... [more]
A0A4D9CMR4_9STRA5.710e-1055.77BTB domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S4AVJ9_9STRA7.800e-1058.33Hypothetical protein (Fragment) n=2 Tax=Pseudo-nit... [more]
A0A448YYD3_9STRA1.410e-952.08Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4VS83_9STRA2.720e-970.27Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7J6QQE6_PEROL4.410e-953.49Uncharacterized protein (Fragment) n=1 Tax=Perkins... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14329contigH-canaliculatus_F_contig14329:128..271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue1.9e-17
Seed eggNOG ortholog2880.D8LIL3
Preferred namelztr1
KEGG koko:K12115,ko:K12116,ko:K12117
KEGG Pathwayko04712,map04712
GOsGO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0007600,GO:0008150,GO:0015030,GO:0016604,GO:0019233,GO:0031974,GO:0031981,GO:0032501,GO:0042752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0050789,GO:0050877,GO:0065007,GO:0070013
EggNOG free text desc.Galactose oxidase, central domain
EggNOG OGs2CMFB@1,2QQ74@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size132
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929181.1221442-UTR-H-canaliculatus_F_contig14329:127..1391622929181.1221442-UTR-H-canaliculatus_F_contig14329:127..139Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14329 128..139 +
1696845709.6262228-UTR-H-canaliculatus_F_contig14329:127..1391696845709.6262228-UTR-H-canaliculatus_F_contig14329:127..139Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14329 128..139 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929181.1348898-CDS-H-canaliculatus_F_contig14329:139..2711622929181.1348898-CDS-H-canaliculatus_F_contig14329:139..271Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14329 140..271 +
1696845709.6417055-CDS-H-canaliculatus_F_contig14329:139..2711696845709.6417055-CDS-H-canaliculatus_F_contig14329:139..271Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14329 140..271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14329.3387.1prot_H-canaliculatus_F_contig14329.3387.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14329 140..271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14329.3387.1

>prot_H-canaliculatus_F_contig14329.3387.1 ID=prot_H-canaliculatus_F_contig14329.3387.1|Name=mRNA_H-canaliculatus_F_contig14329.3387.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=44bp
MTLNTEGTAPIPRDSHVSVIHGQSMYVFGGSTGSAMNDFHELRL
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mRNA from alignment at H-canaliculatus_F_contig14329:128..271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14329.3387.1 ID=mRNA_H-canaliculatus_F_contig14329.3387.1|Name=mRNA_H-canaliculatus_F_contig14329.3387.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=144bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14329:128..271+ (Hapterophycus canaliculatus Oshoro5f female)
TCGAGATTCTGGATGACTCTCAACACAGAAGGCACCGCGCCTATCCCGCG
GGATAGCCACGTGTCGGTGATCCACGGGCAGTCGATGTACGTCTTCGGGG
GGTCAACGGGGTCGGCGATGAACGACTTCCACGAGCTCAGGCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14329:128..271+

>mRNA_H-canaliculatus_F_contig14329.3387.1 ID=mRNA_H-canaliculatus_F_contig14329.3387.1|Name=mRNA_H-canaliculatus_F_contig14329.3387.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=264bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14329:128..271+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACTCTCAACACAGAAGGCACCGCGCCTATCCCGCGGGATAGCCACGT
GTCGGTGATCCACGGGCAGTCGATGTACGTCTTCGGGGGGTCAACGGGGT
CGGCGATGAACGACTTCCACGAGCTCAGGCTCATGACTCTCAACACAGAA
GGCACCGCGCCTATCCCGCGGGATAGCCACGTGTCGGTGATCCACGGGCA
GTCGATGTACGTCTTCGGGGGGTCAACGGGGTCGGCGATGAACGACTTCC
ACGAGCTCAGGCTC
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