mRNA_H-canaliculatus_F_contig14325.3386.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14325.3386.1
Unique NamemRNA_H-canaliculatus_F_contig14325.3386.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14325.3386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14325contigH-canaliculatus_F_contig14325:404..1367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size301
Cds size294
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14325.3386.1prot_H-canaliculatus_F_contig14325.3386.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14325 404..1361 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929181.0475535-CDS-H-canaliculatus_F_contig14325:403..5461622929181.0475535-CDS-H-canaliculatus_F_contig14325:403..546Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14325 404..546 -
1696845709.5744991-CDS-H-canaliculatus_F_contig14325:403..5461696845709.5744991-CDS-H-canaliculatus_F_contig14325:403..546Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14325 404..546 -
1622929181.0589304-CDS-H-canaliculatus_F_contig14325:1195..12741622929181.0589304-CDS-H-canaliculatus_F_contig14325:1195..1274Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14325 1196..1274 -
1696845709.5891814-CDS-H-canaliculatus_F_contig14325:1195..12741696845709.5891814-CDS-H-canaliculatus_F_contig14325:1195..1274Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14325 1196..1274 -
1622929181.0739005-CDS-H-canaliculatus_F_contig14325:1289..13611622929181.0739005-CDS-H-canaliculatus_F_contig14325:1289..1361Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14325 1290..1361 -
1696845709.6029108-CDS-H-canaliculatus_F_contig14325:1289..13611696845709.6029108-CDS-H-canaliculatus_F_contig14325:1289..1361Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14325 1290..1361 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929181.0864813-UTR-H-canaliculatus_F_contig14325:1361..13671622929181.0864813-UTR-H-canaliculatus_F_contig14325:1361..1367Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14325 1362..1367 -
1696845709.6129062-UTR-H-canaliculatus_F_contig14325:1361..13671696845709.6129062-UTR-H-canaliculatus_F_contig14325:1361..1367Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14325 1362..1367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14325.3386.1

>prot_H-canaliculatus_F_contig14325.3386.1 ID=prot_H-canaliculatus_F_contig14325.3386.1|Name=mRNA_H-canaliculatus_F_contig14325.3386.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=98bp
MGSRTFDGAEQEEGEGANGGGGGGPSTVGTRPGRREATAEQDEGARGVAR
APVARERAAAATAAATATPARRLRAAFRWSTLTPRSRRGSSVGRGEER
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mRNA from alignment at H-canaliculatus_F_contig14325:404..1367-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14325.3386.1 ID=mRNA_H-canaliculatus_F_contig14325.3386.1|Name=mRNA_H-canaliculatus_F_contig14325.3386.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=964bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14325:404..1367- (Hapterophycus canaliculatus Oshoro5f female)
GCCACGATGGGCTCTCGAACTTTTGATGGGGCCGAGCAGGAGGAAGGGGA
GGGTGCGAACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCCCTCCA
CGGTGGGCACGCGGCCGGGGCGGCGGGAGGCGACGGCGGAGCAGGATGAG
GGTGCGCGGGGTGTGGCGAGAGGTGAGCTGCGATGGGAACGGCGCAAGCG
AGGGAGGGGAAAGGGGAGGGGAAGTTTTTACGTTTTTGTCCACAACTGGC
CTACTGCTACATAGTCTGATCCTGCCACCCGAATAGAACCCTCACTGAAT
GGAAGTAACAAAAGCCCCTGAGATGGACAGCAGTGTCTCAGGTGGGTATT
CCTTCGGTGTTGTTGACTTGTTTTACAAAATGGTCCGTTTCAAAAGAGAG
GCGGGAAGAGTCCCTAGAACGACGCCGAGAACAAGAGGAGATAAGGGAGA
CAGAAGACAGGAGGGAGAGAGAAAACGAGGGATCAGGGAAGAGGAGATCG
CGCGGCGGCGCTCGGTGTTGGTGGCACTTTCTTGACCTTCACCGTCGATG
CCGGACCGTGCCTCCTTGCATCAAAGAAGGAGTGAGCTTCGGCTTCGCGG
AAGAAGCTCTCCGTGAGACAGGACGCGGAGAGATTCATGGTGAAGCTTTC
CTTGCAGTTCTTGCTTTGGATTCGTCTTGCCCCCCTCCCCCCTCTCCCCC
CTTCCCTCGATCCGCCCCTCGCTCCCGATCTATCGGCGTTGTTCAGGGAC
CGGTCGACGCACCTCCACGAAAAAGGCCCTCCGTACACAAACATAACCCC
TTCCTCATCCCCCCCCCCCAGCACCCGTCGCAAGAGAGAGGGCAGCAGCG
GCGACGGCAGCGGCCACCGCGACACCTGCGAGACGCTTGAGGGCGGCCTT
CCGCTGGAGCACCCTGACCCCGAGGTCGCGGAGGGGGTCTTCCGTTGGGA
GGGGCGAGGAGCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14325:404..1367-

>mRNA_H-canaliculatus_F_contig14325.3386.1 ID=mRNA_H-canaliculatus_F_contig14325.3386.1|Name=mRNA_H-canaliculatus_F_contig14325.3386.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=588bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14325:404..1367- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCTCTCGAACTTTTGATGGGGCCGAGCAGGAGGAAGGGGAGGGTGC
GAACGGCGGCGGCGGCGGCGGCATGGGCTCTCGAACTTTTGATGGGGCCG
AGCAGGAGGAAGGGGAGGGTGCGAACGGCGGCGGCGGCGGCGGCCCCTCC
ACGGTGGGCACGCGGCCGGGGCGGCGGGAGGCGACGGCGGAGCAGGATGA
GGGTGCGCGGGGTGTGGCGAGAGCCCTCCACGGTGGGCACGCGGCCGGGG
CGGCGGGAGGCGACGGCGGAGCAGGATGAGGGTGCGCGGGGTGTGGCGAG
AGCACCCGTCGCAAGAGAGAGGGCAGCAGCGGCGACGGCAGCGGCCACCG
CGACACCTGCGAGACGCTTGAGGGCGGCCTTCCGCTGGAGCACCCTGACC
CCGAGGTCGCGGAGGGGGTCTTCCGTTGGGAGGGGCGAGGAGCGGCACCC
GTCGCAAGAGAGAGGGCAGCAGCGGCGACGGCAGCGGCCACCGCGACACC
TGCGAGACGCTTGAGGGCGGCCTTCCGCTGGAGCACCCTGACCCCGAGGT
CGCGGAGGGGGTCTTCCGTTGGGAGGGGCGAGGAGCGG
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