mRNA_H-canaliculatus_F_contig14323.3385.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14323.3385.1
Unique NamemRNA_H-canaliculatus_F_contig14323.3385.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14323.3385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14323contigH-canaliculatus_F_contig14323:1100..1798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size699
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14323.3385.1prot_H-canaliculatus_F_contig14323.3385.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14323 1185..1790 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929180.9734218-UTR-H-canaliculatus_F_contig14323:1099..11841622929180.9734218-UTR-H-canaliculatus_F_contig14323:1099..1184Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14323 1100..1184 +
1696845709.531713-UTR-H-canaliculatus_F_contig14323:1099..11841696845709.531713-UTR-H-canaliculatus_F_contig14323:1099..1184Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14323 1100..1184 +
1622929181.008342-UTR-H-canaliculatus_F_contig14323:1790..17981622929181.008342-UTR-H-canaliculatus_F_contig14323:1790..1798Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14323 1791..1798 +
1696845709.562227-UTR-H-canaliculatus_F_contig14323:1790..17981696845709.562227-UTR-H-canaliculatus_F_contig14323:1790..1798Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14323 1791..1798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929180.9968987-CDS-H-canaliculatus_F_contig14323:1184..17901622929180.9968987-CDS-H-canaliculatus_F_contig14323:1184..1790Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14323 1185..1790 +
1696845709.5489223-CDS-H-canaliculatus_F_contig14323:1184..17901696845709.5489223-CDS-H-canaliculatus_F_contig14323:1184..1790Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14323 1185..1790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14323.3385.1

>prot_H-canaliculatus_F_contig14323.3385.1 ID=prot_H-canaliculatus_F_contig14323.3385.1|Name=mRNA_H-canaliculatus_F_contig14323.3385.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=202bp
MDKGKKRGAGGCPRGTKNRADSKSTGVARGTYRFKGHGPAVRASPFEDLP
APPAVAGGANAALPSPPAAGGAPSTASGAGSLITASGAGAASTTLAAHPR
LTLLSPGGAAGASSSAAPGAQAQPTRSAAGATLAASGAQPTPSPAGAACG
SSAALGTQVPPTSAEDISDAAACTGFPCTGRIFRSVGCSQVGRGRTSPER
S*
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mRNA from alignment at H-canaliculatus_F_contig14323:1100..1798+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14323.3385.1 ID=mRNA_H-canaliculatus_F_contig14323.3385.1|Name=mRNA_H-canaliculatus_F_contig14323.3385.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=699bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14323:1100..1798+ (Hapterophycus canaliculatus Oshoro5f female)
GGTAGATAGGTTATGCAAGGTGTTCTCAAGGTTGTTGTCGTCAAGACCTT
GCACAAGGGGGGGGGGTCGCCACCTGTGCATCTGCATGGACAAGGGAAAG
AAGAGAGGGGCCGGGGGTTGCCCAAGGGGCACAAAGAACCGCGCAGACTC
GAAAAGCACTGGAGTCGCGCGAGGGACATACAGGTTCAAGGGACATGGCC
CAGCGGTACGTGCAAGTCCTTTCGAGGACCTTCCAGCGCCTCCTGCCGTT
GCTGGTGGAGCTAATGCAGCGCTTCCATCGCCTCCTGCTGCTGGTGGTGC
ACCTAGTACTGCTTCTGGAGCTGGTTCACTTATTACTGCTTCTGGAGCTG
GTGCAGCTAGTACTACTCTTGCCGCACACCCGCGGTTAACCCTGCTGTCT
CCTGGTGGTGCTGCGGGTGCATCTAGCAGTGCCGCTCCTGGAGCACAAGC
TCAACCAACACGATCTGCTGCAGGTGCCACTCTTGCTGCTTCTGGAGCGC
AACCAACCCCCTCTCCTGCTGGTGCTGCGTGTGGGAGCAGCGCCGCTCTT
GGAACCCAAGTGCCACCAACATCTGCCGAGGACATCAGCGACGCTGCCGC
CTGCACTGGATTCCCTTGTACTGGGCGGATCTTTCGGTCCGTGGGATGCA
GCCAAGTCGGCAGGGGACGCACAAGTCCCGAGCGATCTTGATGTACAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14323:1100..1798+

>mRNA_H-canaliculatus_F_contig14323.3385.1 ID=mRNA_H-canaliculatus_F_contig14323.3385.1|Name=mRNA_H-canaliculatus_F_contig14323.3385.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1212bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14323:1100..1798+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGACAAGGGAAAGAAGAGAGGGGCCGGGGGTTGCCCAAGGGGCACAAA
GAACCGCGCAGACTCGAAAAGCACTGGAGTCGCGCGAGGGACATACAGGT
TCAAGGGACATGGCCCAGCGGTACGTGCAAGTCCTTTCGAGGACCTTCCA
GCGCCTCCTGCCGTTGCTGGTGGAGCTAATGCAGCGCTTCCATCGCCTCC
TGCTGCTGGTGGTGCACCTAGTACTGCTTCTGGAGCTGGTTCACTTATTA
CTGCTTCTGGAGCTGGTGCAGCTAGTACTACTCTTGCCGCACACCCGCGG
TTAACCCTGCTGTCTCCTGGTGGTGCTGCGGGTGCATCTAGCAGTGCCGC
TCCTGGAGCACAAGCTCAACCAACACGATCTGCTGCAGGTGCCACTCTTG
CTGCTTCTGGAGCGCAACCAACCCCCTCTCCTGCTGGTGCTGCGTGTGGG
AGCAGCGCCGCTCTTGGAACCCAAGTGCCACCAACATCTGCCGAGGACAT
CAGCGACGCTGCCGCCTGCACTGGATTCCCTTGTACTGGGCGGATCTTTC
GGTCCGTGGGATGCAGCCAAGTCGGCAGGGGACGCACAAGTCCCGAGCGA
TCTTGAATGGACAAGGGAAAGAAGAGAGGGGCCGGGGGTTGCCCAAGGGG
CACAAAGAACCGCGCAGACTCGAAAAGCACTGGAGTCGCGCGAGGGACAT
ACAGGTTCAAGGGACATGGCCCAGCGGTACGTGCAAGTCCTTTCGAGGAC
CTTCCAGCGCCTCCTGCCGTTGCTGGTGGAGCTAATGCAGCGCTTCCATC
GCCTCCTGCTGCTGGTGGTGCACCTAGTACTGCTTCTGGAGCTGGTTCAC
TTATTACTGCTTCTGGAGCTGGTGCAGCTAGTACTACTCTTGCCGCACAC
CCGCGGTTAACCCTGCTGTCTCCTGGTGGTGCTGCGGGTGCATCTAGCAG
TGCCGCTCCTGGAGCACAAGCTCAACCAACACGATCTGCTGCAGGTGCCA
CTCTTGCTGCTTCTGGAGCGCAACCAACCCCCTCTCCTGCTGGTGCTGCG
TGTGGGAGCAGCGCCGCTCTTGGAACCCAAGTGCCACCAACATCTGCCGA
GGACATCAGCGACGCTGCCGCCTGCACTGGATTCCCTTGTACTGGGCGGA
TCTTTCGGTCCGTGGGATGCAGCCAAGTCGGCAGGGGACGCACAAGTCCC
GAGCGATCTTGA
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