mRNA_H-canaliculatus_F_contig1432.3383.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1432.3383.1
Unique NamemRNA_H-canaliculatus_F_contig1432.3383.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1432.3383.1 vs. uniprot
Match: A0A6H5K749_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K749_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.130e-28
Identity = 100/198 (50.51%), Postives = 109/198 (55.05%), Query Frame = 1 
Query:   34 RRKPRILWTRAAALVLGLARGCLSGAVPPSVPPGWSVHFQEDTPYFHNEKTGETTWEQPRLAATTSVAAAVQAHGQ--------ASGRREEPRLPPPARRELSSHLASTQRDTRRPPADSGRGSSGKRGWFGL---GRGAERPQEXXXXXXXXXXXXXSWQGRGAASPTGGRGG-REGHSEGQWQGERGRGWTHSGRG 591
            RR     W RAAAL L LA GCLSG  PPSVPPGW+VHFQ+DTPYF+NEKTGETTWEQPR   T   A AV             A+    EPR P  + R+ SS                          FGL            XXXXXXXXXXXXX WQ RGA +P GGRG  RE  S+ QWQG R RGW+HSGRG
Sbjct:    5 RRHSTRCWPRAAALALSLAGGCLSGVAPPSVPPGWTVHFQQDTPYFYNEKTGETTWEQPRRTTTADPATAVAPSAASAATPGYLAAAGTNEPRSPSSSHRDFSSQPXXXXXXXXXXXXXXXXXXXXXX-XFGLRXXXXXXXXXXXXXXXXXXXXXXXXXWQSRGA-TPAGGRGALREERSQEQWQGARDRGWSHSGRG 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1432.3383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K749_9PHAE1.130e-2850.51WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1432contigH-canaliculatus_F_contig1432:2072..3611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size628
Cds size603
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1432.3383.1prot_H-canaliculatus_F_contig1432.3383.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1432 2072..3587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929180.3100417-CDS-H-canaliculatus_F_contig1432:2071..25301622929180.3100417-CDS-H-canaliculatus_F_contig1432:2071..2530Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1432 2072..2530 -
1696845709.2690153-CDS-H-canaliculatus_F_contig1432:2071..25301696845709.2690153-CDS-H-canaliculatus_F_contig1432:2071..2530Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1432 2072..2530 -
1622929180.331311-CDS-H-canaliculatus_F_contig1432:3443..35871622929180.331311-CDS-H-canaliculatus_F_contig1432:3443..3587Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1432 3444..3587 -
1696845709.2793107-CDS-H-canaliculatus_F_contig1432:3443..35871696845709.2793107-CDS-H-canaliculatus_F_contig1432:3443..3587Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1432 3444..3587 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929180.3492165-UTR-H-canaliculatus_F_contig1432:3587..36111622929180.3492165-UTR-H-canaliculatus_F_contig1432:3587..3611Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1432 3588..3611 -
1696845709.2892246-UTR-H-canaliculatus_F_contig1432:3587..36111696845709.2892246-UTR-H-canaliculatus_F_contig1432:3587..3611Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1432 3588..3611 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1432.3383.1

>prot_H-canaliculatus_F_contig1432.3383.1 ID=prot_H-canaliculatus_F_contig1432.3383.1|Name=mRNA_H-canaliculatus_F_contig1432.3383.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=201bp
MGARRKPRILWTRAAALVLGLARGCLSGAVPPSVPPGWSVHFQEDTPYFH
NEKTGETTWEQPRLAATTSVAAAVQAHGQASGRREEPRLPPPARRELSSH
LASTQRDTRRPPADSGRGSSGKRGWFGLGRGAERPQEQQQQQQQQEEQQQ
SWQGRGAASPTGGRGGREGHSEGQWQGERGRGWTHSGRGAQAQGAGRPAA
P
back to top

mRNA from alignment at H-canaliculatus_F_contig1432:2072..3611-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1432.3383.1 ID=mRNA_H-canaliculatus_F_contig1432.3383.1|Name=mRNA_H-canaliculatus_F_contig1432.3383.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1540bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1432:2072..3611- (Hapterophycus canaliculatus Oshoro5f female)
CAACAACACGAGCTGCAGTGCACCATGGGTGCCAGGCGAAAGCCGAGGAT
TTTATGGACGAGAGCAGCTGCTTTGGTACTTGGTCTCGCTAGAGGATGTC
TTTCAGGAGCTGTACCGCCCAGCGTTCCGCCAGGATGGAGCGTCCACTTT
CAGGAGGACACTCCATATGTGAGAGATCTACGCTAACCCTACTCCTACAA
CATCCTTGAAAGTTTGGACAGACTGGGAGCACGAGTAGTGCGACGATGAG
CAAATCGTTTTCGATTAAAATCCGATTGCATCCACGCTCTTGCCTTCGGT
AACTCCTGAGTGGAGTTGTGGGGTTGTGGAAGTAGTAACGTGAGCTCAGC
GACTAATTGAGGTTGACTTCGTATCATATTTTACCGTCGCCTTGAATCAA
ACTCTCCTTACTCCCTTTCAGAGCGCCGCGTGGCACTTAACTTGATAGTC
CGGAGTACCAGGTATCAGCAAGTTGTACTCGCTCTCCTCTGCTGGTGTCT
ACGCCTTCCGCGTCCAGCAAACACGGACGCATTCCGATCGCGCAACAAGC
AGCTGATACCAAAACCGGAGATTGATCAGATTCCCCCAACTGATGGTCTT
GATCAAAACCTGTGCCTTGGAGAGTAGGACCATCTCGGTCGCAGGATGCA
ACAGTAGGAGTTGTAGCGCAAGTTGGTGGGGCGAGTCTCCTCGCGCAACC
TCATGGGTGTTCTGTGTACCGTTGGTACATACGCCGTTCACACACGCGTG
CAACTATTTCCATAATCTGTCTCCGGTACAATTGCCGTTCTCGTCAACAA
CGGAACGAAATGCCACTTGTCGGCTGAAGATCAGTAAATGTTTTCCATCC
AGACAACCCGAGGCGCTGGGCCATTGGATACCCTGCCTGCTGAATGTGGC
GGACATGCAAAGTGCTTCTTGATGTCGACACCGGTCGGATAGTCCCCGGT
GGTTCGCTTCCTACCCCCCCCCTTCTCAATCCTTTCCCTTGTCGACTAAT
TTAGATTTCCCCCTTCGCCCCTCCGCACCTAAAACGCGGTCGCCATTCCG
TTCCGCTTGCGGAATCTCTCGGCGGTTTCAGTTCCACAACGAAAAGACTG
GGGAGACCACGTGGGAACAGCCCCGTCTCGCCGCGACAACCTCAGTAGCA
GCCGCAGTCCAGGCGCACGGCCAAGCATCCGGCCGGCGCGAGGAGCCGAG
GCTGCCTCCCCCCGCGCGACGAGAACTCTCCTCACACCTAGCTTCGACGC
AGCGAGATACACGGCGCCCCCCCGCCGACAGCGGAAGAGGCTCCAGCGGG
AAGCGGGGTTGGTTTGGACTCGGGCGCGGCGCGGAGAGGCCACAGGAGCA
GCAGCAGCAGCAGCAGCAGCAGGAAGAGCAACAGCAGTCTTGGCAAGGCC
GCGGCGCGGCCTCGCCCACGGGAGGTCGCGGCGGACGGGAAGGACACTCC
GAAGGTCAGTGGCAGGGGGAAAGGGGTCGAGGGTGGACTCACTCGGGCCG
GGGAGCGCAGGCGCAGGGGGCGGGGCGGCCGGCTGCGCCT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1432:2072..3611-

>mRNA_H-canaliculatus_F_contig1432.3383.1 ID=mRNA_H-canaliculatus_F_contig1432.3383.1|Name=mRNA_H-canaliculatus_F_contig1432.3383.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1206bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1432:2072..3611- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGTGCCAGGCGAAAGCCGAGGATTTTATGGACGAGAGCAGCTGCTTT
GGTACTTGGTCTCGCTAGAGGATGTCTTTCAGGAGCTGTACCGCCCAGCG
TTCCGCCAGGATGGAGCGTCCACTTTCAGGAGGACACTCCATATATGGGT
GCCAGGCGAAAGCCGAGGATTTTATGGACGAGAGCAGCTGCTTTGGTACT
TGGTCTCGCTAGAGGATGTCTTTCAGGAGCTGTACCGCCCAGCGTTCCGC
CAGGATGGAGCGTCCACTTTCAGGAGGACACTCCATATTTCCACAACGAA
AAGACTGGGGAGACCACGTGGGAACAGCCCCGTCTCGCCGCGACAACCTC
AGTAGCAGCCGCAGTCCAGGCGCACGGCCAAGCATCCGGCCGGCGCGAGG
AGCCGAGGCTGCCTCCCCCCGCGCGACGAGAACTCTCCTCACACCTAGCT
TCGACGCAGCGAGATACACGGCGCCCCCCCGCCGACAGCGGAAGAGGCTC
CAGCGGGAAGCGGGGTTGGTTTGGACTCGGGCGCGGCGCGGAGAGGCCAC
AGGAGCAGCAGCAGCAGCAGCAGCAGCAGGAAGAGCAACAGCAGTCTTGG
CAAGGCCGCGGCGCGGCCTCGCCCACGGGAGGTCGCGGCGGACGGGAAGG
ACACTCCGAAGGTCAGTGGCAGGGGGAAAGGGGTCGAGGGTGGACTCACT
CGGGCCGGGGAGCGCAGGCGCAGGGGGCGGGGCGGCCGGCTGCGCCTTTC
CACAACGAAAAGACTGGGGAGACCACGTGGGAACAGCCCCGTCTCGCCGC
GACAACCTCAGTAGCAGCCGCAGTCCAGGCGCACGGCCAAGCATCCGGCC
GGCGCGAGGAGCCGAGGCTGCCTCCCCCCGCGCGACGAGAACTCTCCTCA
CACCTAGCTTCGACGCAGCGAGATACACGGCGCCCCCCCGCCGACAGCGG
AAGAGGCTCCAGCGGGAAGCGGGGTTGGTTTGGACTCGGGCGCGGCGCGG
AGAGGCCACAGGAGCAGCAGCAGCAGCAGCAGCAGCAGGAAGAGCAACAG
CAGTCTTGGCAAGGCCGCGGCGCGGCCTCGCCCACGGGAGGTCGCGGCGG
ACGGGAAGGACACTCCGAAGGTCAGTGGCAGGGGGAAAGGGGTCGAGGGT
GGACTCACTCGGGCCGGGGAGCGCAGGCGCAGGGGGCGGGGCGGCCGGCT
GCGCCT
back to top