mRNA_H-canaliculatus_F_contig1432.3382.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1432.3382.1
Unique NamemRNA_H-canaliculatus_F_contig1432.3382.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1432.3382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1432contigH-canaliculatus_F_contig1432:1270..1760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size493
Cds size360
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929180.3967023-UTR-H-canaliculatus_F_contig1432:1269..14001622929180.3967023-UTR-H-canaliculatus_F_contig1432:1269..1400Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1432 1270..1400 +
1696845709.299724-UTR-H-canaliculatus_F_contig1432:1269..14001696845709.299724-UTR-H-canaliculatus_F_contig1432:1269..1400Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1432 1270..1400 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929180.4114103-CDS-H-canaliculatus_F_contig1432:1400..17601622929180.4114103-CDS-H-canaliculatus_F_contig1432:1400..1760Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1432 1401..1760 +
1696845709.3166943-CDS-H-canaliculatus_F_contig1432:1400..17601696845709.3166943-CDS-H-canaliculatus_F_contig1432:1400..1760Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1432 1401..1760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1432.3382.1prot_H-canaliculatus_F_contig1432.3382.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1432 1401..1760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1432.3382.1

>prot_H-canaliculatus_F_contig1432.3382.1 ID=prot_H-canaliculatus_F_contig1432.3382.1|Name=mRNA_H-canaliculatus_F_contig1432.3382.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=120bp
METARSAESRAPAEDPGAPIRPRGPPAPSPPVPASPRRSATPPPKCCSSK
ADVVLGVSLSPVLQSAGVNVVSLFPSCCCHSPFVSTVAGGAAAAVTGTAA
PAASASAAAAAPSGIPSVVP
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mRNA from alignment at H-canaliculatus_F_contig1432:1270..1760+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1432.3382.1 ID=mRNA_H-canaliculatus_F_contig1432.3382.1|Name=mRNA_H-canaliculatus_F_contig1432.3382.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=491bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1432:1270..1760+ (Hapterophycus canaliculatus Oshoro5f female)
CCCATGGGTCTGCCCAGTCCCACCCTTTCGCTTCGTGCCCCATCCCGTCA
TATCCATATTGCTGCTGCTGCTGCTGATTGTCGGGCTCGGGATGGTGCCC
GGAGTCCCACAATCGCCCCTCGTGCTCAGGCATGGAAACTGCACGCTCCG
CCGAATCGCGCGCTCCAGCTGAGGACCCCGGTGCCCCCATACGTCCGAGG
GGCCCGCCTGCTCCCTCTCCCCCCGTGCCTGCCTCGCCTCGCAGATCAGC
AACACCGCCGCCGAAATGCTGCTCTTCCAAAGCGGACGTTGTGCTGGGAG
TTTCGCTGTCGCCCGTGCTGCAAAGTGCCGGGGTGAACGTGGTATCACTC
TTCCCTTCCTGTTGCTGCCACTCGCCCTTCGTTTCGACTGTTGCTGGTGG
CGCTGCCGCCGCCGTTACTGGTACCGCCGCCCCCGCTGCGTCAGCTTCGG
CCGCCGCTGCCGCCCCCTCTGGTATCCCCTCGGTCGTCCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1432:1270..1760+

>mRNA_H-canaliculatus_F_contig1432.3382.1 ID=mRNA_H-canaliculatus_F_contig1432.3382.1|Name=mRNA_H-canaliculatus_F_contig1432.3382.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=720bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1432:1270..1760+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAAACTGCACGCTCCGCCGAATCGCGCGCTCCAGCTGAGGACCCCGG
TGCCCCCATACGTCCGAGGGGCCCGCCTGCTCCCTCTCCCCCCGTGCCTG
CCTCGCCTCGCAGATCAGCAACACCGCCGCCGAAATGCTGCTCTTCCAAA
GCGGACGTTGTGCTGGGAGTTTCGCTGTCGCCCGTGCTGCAAAGTGCCGG
GGTGAACGTGGTATCACTCTTCCCTTCCTGTTGCTGCCACTCGCCCTTCG
TTTCGACTGTTGCTGGTGGCGCTGCCGCCGCCGTTACTGGTACCGCCGCC
CCCGCTGCGTCAGCTTCGGCCGCCGCTGCCGCCCCCTCTGGTATCCCCTC
GGTCGTCCCCATGGAAACTGCACGCTCCGCCGAATCGCGCGCTCCAGCTG
AGGACCCCGGTGCCCCCATACGTCCGAGGGGCCCGCCTGCTCCCTCTCCC
CCCGTGCCTGCCTCGCCTCGCAGATCAGCAACACCGCCGCCGAAATGCTG
CTCTTCCAAAGCGGACGTTGTGCTGGGAGTTTCGCTGTCGCCCGTGCTGC
AAAGTGCCGGGGTGAACGTGGTATCACTCTTCCCTTCCTGTTGCTGCCAC
TCGCCCTTCGTTTCGACTGTTGCTGGTGGCGCTGCCGCCGCCGTTACTGG
TACCGCCGCCCCCGCTGCGTCAGCTTCGGCCGCCGCTGCCGCCCCCTCTG
GTATCCCCTCGGTCGTCCCC
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