mRNA_H-canaliculatus_F_contig1430.3373.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1430.3373.1
Unique NamemRNA_H-canaliculatus_F_contig1430.3373.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1430.3373.1 vs. uniprot
Match: A0A6H5JXI4_9PHAE (FA_desaturase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXI4_9PHAE)

HSP 1 Score: 348 bits (893), Expect = 6.420e-112
Identity = 161/183 (87.98%), Postives = 177/183 (96.72%), Query Frame = 1
Query:    1 VLFWSRKEQVQCAVSSASVMAFVYLLVAVCFDFDWTAIVVRHAVPVIIMNYWLVMVTYLQHHESDTETFDDADFHFATAAMETVDRKYGWGIDDAHHNITDGHVAHHLFFTKIPHYNLKKATAAIRPTLEKLGVYRYRNNPNFLWVFVRDNYKLGFHTHSKAHDHRAKMHYLDASRTPAFSNK 549
            VLFWSRKEQVQCAVS+ASV+ F+YLLV+V FDFDW+AIVVRH VPV+IMNYWLVMVTYLQHHE DT+TFD++DFHFATAAMETVDRK+GWGIDDAHHNITDGHVAHHLFFTKIPHYNL+KATAAIRP+LEKLG+YRYRNNPNFLWVF R+NYKLGF+THSKAHDHRAKMHYLDASRTPAF +K
Sbjct:  199 VLFWSRKEQVQCAVSTASVLTFIYLLVSVLFDFDWSAIVVRHLVPVMIMNYWLVMVTYLQHHEEDTKTFDNSDFHFATAAMETVDRKFGWGIDDAHHNITDGHVAHHLFFTKIPHYNLQKATAAIRPSLEKLGLYRYRNNPNFLWVFARENYKLGFYTHSKAHDHRAKMHYLDASRTPAFKSK 381          
BLAST of mRNA_H-canaliculatus_F_contig1430.3373.1 vs. uniprot
Match: A0A835YPJ0_9STRA (Fatty acid desaturase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPJ0_9STRA)

HSP 1 Score: 224 bits (572), Expect = 2.220e-64
Identity = 107/161 (66.46%), Postives = 125/161 (77.64%), Query Frame = 1
Query:    4 LFWSRKEQVQCAVSSASVMAFVYLLVAVCFDFDWTAIVVRHAVPVIIMNYWLVMVTYLQHHESDTETFDDADFHFATAAMETVDRKYGWGIDDAHHNITDGHVAHHLFFTKIPHYNLKKATAAIRPTLEKLGVYRYRNNPNFLWVFVRDNYKLGFHTHSKA 486
            LF +R ++VQCAVSS +V  F+ L +    ++ W+A  V++A P  I NYWLVMVTYLQHHE D+ T+DDAD+ FA AAMETVDRKY WG+DD HHNITDGHV HHLFFTKIPHYNL KAT A+RP LE LGVYRY+ NP FLW FV+ NYK G  THSKA
Sbjct:  201 LFKNRTQRVQCAVSSLAVALFLGLFLHYVIEYSWSAFAVKYAAPWCIYNYWLVMVTYLQHHEPDSITYDDADYSFAVAAMETVDRKYCWGVDDLHHNITDGHVVHHLFFTKIPHYNLMKATDALRPYLEGLGVYRYQRNPLFLWTFVQYNYKYGLFTHSKA 361          
BLAST of mRNA_H-canaliculatus_F_contig1430.3373.1 vs. uniprot
Match: A0A7S4PZI0_9DINO (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S4PZI0_9DINO)

HSP 1 Score: 150 bits (379), Expect = 1.280e-36
Identity = 76/152 (50.00%), Postives = 109/152 (71.71%), Query Frame = 1
Query:    4 LFWSRKEQVQCAVSSASVMAFVYLLVAVCFDFD-WTAIVVRHAVPVIIMNYWLVMVTYLQHHESDTETFDDADFHFATAAMETVDRKYGWGIDDAHHNITDGHVAHHLFFTKIPHYNLKKATAAIRPTLEKLG--VYRYRNNPNFLWVFVRD 450
            LF + +++VQCAVSS SV+AF    V + F FD W      +  P+   N WLV+VTYLQHH+ +T  +D+ ++++   A ETVDR YG+GIDD HHNITDGHV HH+FFT+IPHY+LK+ATAAI P ++K G  +Y+++ + +FL+ + R+
Sbjct:  216 LFETTQQRVQCAVSSLSVVAF---SVGMYFYFDSWGQWFSMYFGPLCFFNMWLVLVTYLQHHDDETLAYDEGEWNYLRGAFETVDRTYGFGIDDIHHNITDGHVLHHIFFTQIPHYHLKEATAAIVPVIQKYGKGLYKHQESRDFLYKYSRN 364          
BLAST of mRNA_H-canaliculatus_F_contig1430.3373.1 vs. uniprot
Match: A0A1S7C7R3_9STRA (Om n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A1S7C7R3_9STRA)

HSP 1 Score: 149 bits (376), Expect = 5.370e-36
Identity = 75/158 (47.47%), Postives = 106/158 (67.09%), Query Frame = 1
Query:    4 LFWSRKEQVQCAVSSASVM---AFVYLLVAVCFDFDWTAIVVRHAVPVIIMNYWLVMVTYLQHHESDTETFDDADFHFATAAMETVDRKYGWGIDDAHHNITDGHVAHHLFFTKIPHYNLKKATAAIRPTLEKLGVYRYRNNPNFLWVFVRDNYKLGF 468
            LF   KE+VQCAVS+  ++   A VY+ +    +     I   + VP+++ N W+ MVTYLQHH+ DT+ + + ++++   A+ET+DR+YG GIDD  HNITDGHVAHHLFFT+IPHY+L  ATAA+R  L+  G Y+ R + NFL  F   NY+L +
Sbjct:  179 LFTDTKERVQCAVSTLGMVVAGALVYIGLEGGKEGGMARIGSIYVVPLLVFNAWITMVTYLQHHDEDTKVYAEGEWNYIKGALETIDREYGMGIDDLSHNITDGHVAHHLFFTQIPHYHLTAATAAVRQCLQPTGTYKKRRSWNFLARFTELNYRLKY 336          
BLAST of mRNA_H-canaliculatus_F_contig1430.3373.1 vs. uniprot
Match: A0A4D9DBT0_9STRA (FA_desaturase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBT0_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.070e-35
Identity = 72/158 (45.57%), Postives = 104/158 (65.82%), Query Frame = 1
Query:    4 LFWSRKEQVQCAVSSASVMA---FVYLLVAVCFDFDWTAIVVRHAVPVIIMNYWLVMVTYLQHHESDTETFDDADFHFATAAMETVDRKYGWGIDDAHHNITDGHVAHHLFFTKIPHYNLKKATAAIRPTLEKLGVYRYRNNPNFLWVFVRDNYKLGF 468
            LF   KE++QCAVS+  ++     +Y+ +    +     I   + +P+++ N W+ MVTYLQHH+ DT+ + + ++ +   A+ET+DR+YG GIDD  HNITDGHVAHHLFFT+IPHY+LK ATAA+R  L   G Y+ + + NFL  F   NYKL +
Sbjct:  152 LFSGTKERIQCAVSTLCMLVAGVLIYVGLEGGAEGGLARIGSMYLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGMGIDDLSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKY 309          
BLAST of mRNA_H-canaliculatus_F_contig1430.3373.1 vs. uniprot
Match: A0A4U8UWN0_STECR (FA_desaturase domain-containing protein n=2 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U8UWN0_STECR)

HSP 1 Score: 147 bits (371), Expect = 3.790e-35
Identity = 74/155 (47.74%), Postives = 96/155 (61.94%), Query Frame = 1
Query:    4 LFWSRKEQVQCAVSSASVMAFVYLLVAVCFDFDWTAIVVRHAVPVIIMNYWLVMVTYLQHHESDTETFDDADFHFATAAMETVDRKYGWGIDDAHHNITDGHVAHHLFFTKIPHYNLKKATAAIRPTLEKLGVYRYRNNPNFLWVFVRDNYKLGF 468
            LF S  E++QC +S  +     Y+  A C  +DW      + VPV+   +WL MVTYLQH   D   ++D  + +    M+T+DR YG+GID   H+ITDGHVAHHLFFTKIPHYNL KAT A+R  LE  GVYR R + +FL  F R N +L +
Sbjct:  258 LFNSTTERIQCFISGLACALCAYVAFAFC-SYDWLTYGKFYIVPVLCQGFWLTMVTYLQHQSDDINVYEDGTWGYVRGQMQTIDRPYGFGIDQLMHHITDGHVAHHLFFTKIPHYNLMKATKALRDKLEPFGVYRRRVSYDFLLEFCRLNMRLEY 411          
BLAST of mRNA_H-canaliculatus_F_contig1430.3373.1 vs. uniprot
Match: I2CR09_NANGC (Glycerolipid omega-3 fatty acid desaturase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR09_NANGC)

HSP 1 Score: 147 bits (371), Expect = 6.010e-35
Identity = 72/158 (45.57%), Postives = 104/158 (65.82%), Query Frame = 1
Query:    4 LFWSRKEQVQCAVSSASVMA---FVYLLVAVCFDFDWTAIVVRHAVPVIIMNYWLVMVTYLQHHESDTETFDDADFHFATAAMETVDRKYGWGIDDAHHNITDGHVAHHLFFTKIPHYNLKKATAAIRPTLEKLGVYRYRNNPNFLWVFVRDNYKLGF 468
            LF   KE++QCAVS+  ++     +Y+ +    +     I   + +P+++ N W+ MVTYLQHH+ DT+ + + ++ +   A+ET+DR+YG GIDD  HNITDGHVAHHLFFT+IPHY+LK ATAA+R  L   G Y+ + + NFL  F   NYKL +
Sbjct:  229 LFSDTKERIQCAVSTLCMLVAGVLIYVGLEGGAEGGLARIGSMYLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGMGIDDLSHNITDGHVAHHLFFTQIPHYHLKDATAAVRQLLTPTGTYKKKQSWNFLGKFTELNYKLKY 386          
BLAST of mRNA_H-canaliculatus_F_contig1430.3373.1 vs. uniprot
Match: A0A0N5D9B4_THECL (FA_desaturase domain-containing protein n=1 Tax=Thelazia callipaeda TaxID=103827 RepID=A0A0N5D9B4_THECL)

HSP 1 Score: 143 bits (361), Expect = 2.750e-34
Identity = 67/155 (43.23%), Postives = 101/155 (65.16%), Query Frame = 1
Query:    4 LFWSRKEQVQCAVSSASVMAFVYLLVAVCFDFDWTAIVVRHAVPVIIMNYWLVMVTYLQHHESDTETFDDADFHFATAAMETVDRKYGWGIDDAHHNITDGHVAHHLFFTKIPHYNLKKATAAIRPTLEKLGVYRYRNNPNFLWVFVRDNYKLGF 468
            LF + +E+VQC +S  S +        +C D+ W   +  + + ++   YWLV++TYLQH++   E +++  + +    ++T+DR YG+GID A H+ITDGHVAHH FFTKIPHY+L KATAAI+  LE  G YR ++N +FLW ++  N KL +
Sbjct:  197 LFNNNRERVQCLISGLSCLLCAVGAFVIC-DYSWFLFIKYYYISLLFQGYWLVIITYLQHNDYSIEVYEEGYWSYVMGQVQTIDRVYGFGIDVAMHHITDGHVAHHFFFTKIPHYHLMKATAAIKKVLEPYGAYRCKSNYDFLWEYLLLNVKLEY 350          
BLAST of mRNA_H-canaliculatus_F_contig1430.3373.1 vs. uniprot
Match: A0A4Y5R1F4_9BILA (Fatty acid desaturase n=1 Tax=Mesorhabditis longespiculosa TaxID=473162 RepID=A0A4Y5R1F4_9BILA)

HSP 1 Score: 139 bits (351), Expect = 1.900e-32
Identity = 75/161 (46.58%), Postives = 102/161 (63.35%), Query Frame = 1
Query:    4 LFWSRKEQVQCAVSSASVMA-----FVYLLVAVCFDFD---WTAIVVRHAVPVIIMNYWLVMVTYLQHHESDTETFDDADFHFATAAMETVDRKYGWGIDDAHHNITDGHVAHHLFFTKIPHYNLKKATAAIRPTLEKLGVYRYRNNPNFLWVFVRDNYKL 462
            +F +  E++QCAVS    +A     F YL      D+D   WT     + +PVI   +WL MVTYLQH   D + F+D  + +    ++T+DR YG+GID   H+ITDGHVAHHLFFT+IPHYNL KAT A++  LE LGVYR++ + +FL+ F + N KL
Sbjct:  253 MFDNTTERIQCAVSGLCCLAWASAAFWYL------DYDVYSWTKF---YLLPVISQGFWLTMVTYLQHQTEDIKVFEDGTWGYVKGQLQTIDRPYGFGIDQLMHHITDGHVAHHLFFTQIPHYNLMKATKALQEKLEPLGVYRHQKSHDFLYQFYQLNRKL 404          
BLAST of mRNA_H-canaliculatus_F_contig1430.3373.1 vs. uniprot
Match: A0A6V7U4C9_9BILA (Hypothetical protein n=3 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7U4C9_9BILA)

HSP 1 Score: 136 bits (342), Expect = 1.080e-31
Identity = 72/159 (45.28%), Postives = 106/159 (66.67%), Query Frame = 1
Query:    4 LFWSRKEQVQCAVSSASVMAFVYLLVAVCFDFDWTAIVVRHAVPVI--IMNYWLVMVTYLQHHESDTETFDDADFHFATAAMETVDRKYGWGIDDAHHNITDGHVAHHLFFTKIPHYNLKKATAAIRPTL-EKL-GVYRYRNNPNFLWVFVRDNYKLGF 468
            LF +  ++++CAVS A+     Y+ +  C +++       + VPV+  ++ +WLVM+TYLQHH+  TE ++D  + F    ++TVDR +G+GID A HNITDGHVAHHLFFT+IPHYNL KAT A++  L EK  G Y+Y+ + +FL  F+  N KL +
Sbjct:  181 LFENNTDRIKCAVSVAACFLCAYIALY-CSNYNLWIFFKYYYVPVMFQVLCFWLVMITYLQHHDEQTEVYEDGTWGFVKGQLQTVDRSFGFGIDKAMHNITDGHVAHHLFFTRIPHYNLPKATEAVKRILMEKYPGTYKYKKSYDFLIEFLWLNIKLDY 338          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1430.3373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXI4_9PHAE6.420e-11287.98FA_desaturase domain-containing protein n=2 Tax=Ec... [more]
A0A835YPJ0_9STRA2.220e-6466.46Fatty acid desaturase n=1 Tax=Tribonema minus TaxI... [more]
A0A7S4PZI0_9DINO1.280e-3650.00Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A1S7C7R3_9STRA5.370e-3647.47Om n=1 Tax=Nannochloropsis oceanica TaxID=145522 R... [more]
A0A4D9DBT0_9STRA1.070e-3545.57FA_desaturase domain-containing protein n=1 Tax=Na... [more]
A0A4U8UWN0_STECR3.790e-3547.74FA_desaturase domain-containing protein n=2 Tax=St... [more]
I2CR09_NANGC6.010e-3545.57Glycerolipid omega-3 fatty acid desaturase (Fragme... [more]
A0A0N5D9B4_THECL2.750e-3443.23FA_desaturase domain-containing protein n=1 Tax=Th... [more]
A0A4Y5R1F4_9BILA1.900e-3246.58Fatty acid desaturase n=1 Tax=Mesorhabditis longes... [more]
A0A6V7U4C9_9BILA1.080e-3145.28Hypothetical protein n=3 Tax=Meloidogyne enterolob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1430contigH-canaliculatus_F_contig1430:24395..26791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score317.4
Seed ortholog evalue4e-84
Seed eggNOG ortholog2880.D7FSC6
Preferred nameFAD2
KEGG rclassRC00917
KEGG koko:K10256,ko:K10257,ko:K21704,ko:K21710,ko:K21736
KEGG ReactionR11043,R11044
KEGG Pathwayko01040,ko01212,map01040,map01212
GOsGO:0000003,GO:0002376,GO:0003674,GO:0003824,GO:0004497,GO:0004768,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006950,GO:0006952,GO:0006955,GO:0007275,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016053,GO:0016215,GO:0016491,GO:0016705,GO:0016709,GO:0016717,GO:0016720,GO:0019752,GO:0030176,GO:0030497,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0032787,GO:0033559,GO:0040002,GO:0040012,GO:0040017,GO:0042175,GO:0042335,GO:0042389,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0045485,GO:0046394,GO:0048518,GO:0048856,GO:0050183,GO:0050789,GO:0050896,GO:0055114,GO:0065007,GO:0071704,GO:0072330,GO:0098827,GO:1901576
EggNOG free text desc.oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water
EggNOG OGs2QQNB@2759,COG3239@1
Ec32 ortholog descriptionFatty acid desaturase
Ec32 orthologEc-20_005010.1
EC1.14.18.4,1.14.19.16,1.14.19.22,1.14.19.25,1.14.19.33,1.14.19.34,1.14.19.35,1.14.19.36,1.14.19.6
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Hectar predicted targeting categorysignal peptide
Exons3
Model size1741
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1430.3373.1prot_H-canaliculatus_F_contig1430.3373.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1430 25575..26734 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.5203853-UTR-H-canaliculatus_F_contig1430:24394..255741622929179.5203853-UTR-H-canaliculatus_F_contig1430:24394..25574Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1430 24395..25574 -
1696845708.946236-UTR-H-canaliculatus_F_contig1430:24394..255741696845708.946236-UTR-H-canaliculatus_F_contig1430:24394..25574Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1430 24395..25574 -
1622929179.5886974-UTR-H-canaliculatus_F_contig1430:26734..267911622929179.5886974-UTR-H-canaliculatus_F_contig1430:26734..26791Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1430 26735..26791 -
1696845708.9894755-UTR-H-canaliculatus_F_contig1430:26734..267911696845708.9894755-UTR-H-canaliculatus_F_contig1430:26734..26791Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1430 26735..26791 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.5404155-CDS-H-canaliculatus_F_contig1430:25574..257281622929179.5404155-CDS-H-canaliculatus_F_contig1430:25574..25728Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1430 25575..25728 -
1696845708.958137-CDS-H-canaliculatus_F_contig1430:25574..257281696845708.958137-CDS-H-canaliculatus_F_contig1430:25574..25728Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1430 25575..25728 -
1622929179.5584528-CDS-H-canaliculatus_F_contig1430:26000..262061622929179.5584528-CDS-H-canaliculatus_F_contig1430:26000..26206Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1430 26001..26206 -
1696845708.966538-CDS-H-canaliculatus_F_contig1430:26000..262061696845708.966538-CDS-H-canaliculatus_F_contig1430:26000..26206Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1430 26001..26206 -
1622929179.574709-CDS-H-canaliculatus_F_contig1430:26590..267341622929179.574709-CDS-H-canaliculatus_F_contig1430:26590..26734Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1430 26591..26734 -
1696845708.9753194-CDS-H-canaliculatus_F_contig1430:26590..267341696845708.9753194-CDS-H-canaliculatus_F_contig1430:26590..26734Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1430 26591..26734 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1430.3373.1

>prot_H-canaliculatus_F_contig1430.3373.1 ID=prot_H-canaliculatus_F_contig1430.3373.1|Name=mRNA_H-canaliculatus_F_contig1430.3373.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=168bp
MAFVYLLVAVCFDFDWTAIVVRHAVPVIIMNYWLVMVTYLQHHESDTETF
DDADFHFATAAMETVDRKYGWGIDDAHHNITDGHVAHHLFFTKIPHYNLK
KATAAIRPTLEKLGVYRYRNNPNFLWVFVRDNYKLGFHTHSKAHDHRAKM
HYLDASRTPAFSNKKAI*
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mRNA from alignment at H-canaliculatus_F_contig1430:24395..26791-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1430.3373.1 ID=mRNA_H-canaliculatus_F_contig1430.3373.1|Name=mRNA_H-canaliculatus_F_contig1430.3373.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2397bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1430:24395..26791- (Hapterophycus canaliculatus Oshoro5f female)
GTGCTCTTCTGGAGCCGCAAGGAGCAAGTGCAGTGTGCGGTGTCTTCAGC CTCTGTCATGGCCTTTGTGTACCTGCTGGTGGCTGTGTGTTTCGATTTCG ACTGGACGGCCATCGTGGTCCGCCATGCCGTTCCCGTGATCATCATGAAC TACTGGCTCGTGATGGTCACCTATCTTCAGCACCACGAGTCTGACACCGA GGTACGGTGGGCAGAGGAGAGAAGGATAGCATGGCGGGGCGGAGTGAGCG TTGAAAGCACGAAAATTCGAGGTAGGGCAGGGAAAAAGAGCGGGCGAGGT GACCTTCCTTGCAGCTCGGCAAATGAGGTTTTGTTTCAGTTGTTTAAACA CGAGCAATCGTTCGAGTCGCCCTTCAAATAACCCGGTCTCCCGCGAAAAG ATGCAGCCACAGTGCTGTGCTTCCTCGTCGGTGTATCCGAATACAAGAAG GAGTTTCTCCCGATATTGCGGAACCCCCGTCGGTCCTGCCCACGCTTTTC ATGACGCCTTCCTCTCCTCTCGACTGCATCCGTGATCGTTTGCTGCCTCT TGGTGCCCGTCCGCCCGTCCATCCGTCCGTCCCAGACCTTTGACGACGCC GACTTTCACTTCGCAACGGCGGCCATGGAGACTGTGGACAGAAAGTACGG CTGGGGCATCGACGACGCCCACCACAACATCACCGACGGCCACGTCGCTC ACCACCTTTTTTTCACGAAGATCCCCCACTACAACCTCAAAAAGGCCACG GCGGCGATCAGACCGACACTGGAGAAGCTCGGCGTATACCGGTGAGGCTC GTGTGCTTAGCGACTGCTGTCTTGCAGCTTTTTCGCTTTCGCCTTTCTTC TTCTCACCTGTTTTTGCCGAGGCCAGCTGGCTTGAGCGGCGGACCGGGAG GGTGTGAAAAGCTATCAGGTTCACAGGCTTGGCGCCTTCAACGCGAATTC CCTCCGATCATGCGCATGAATCCGCGTCTCCGTACGACGTCGGGCCTCCC TGCAATAAGGCTGAAACTATCTCTGCCCCCGCCTCTCCTCCCTGAACTTG TCCTCGCAAACAGGTACCGTAACAACCCCAACTTCTTGTGGGTCTTCGTG CGTGACAACTACAAGCTAGGATTCCACACTCACTCGAAGGCGCACGACCA CAGGGCAAAGATGCACTACCTCGACGCTTCCCGGACACCGGCGTTCAGCA ACAAAAAGGCGATCTAGCTAGCTCCCGTTCGTCAGAGTTGATCGTGTATC TTCCCCGCCTTGTTCCGGAGAAATAATCATGCACCGTAGAGGTCAATGCG AGCAATAACGGAGGCAGGATAGCCTCCGCGCCCCTAATTTCCACAGTTTT TGGTGTCGTGTTCCGTGAACTTTCTGTACGAGTATGGCGTGAAGTAAAAG GTTAGGCAAGATGCGCCTGGTTTTTCGGTCTCTGAATCCGCTCTCTACGT CGGCTAGCTGGCTCTTCTCGGGGATGTCTTTCGTTAGCTTTTTCGTTCAC TTCGGACTCCCCTTTTTTCTGTCACGTGTGTCTCCTGATTGTGTCGGCCT TCTTCCCTTGGGATTCGTGTGTTGATGATTTCCTTACACGTGGGCGCTTC GCTTCTGCTCCCTCCGCTCAAGATCTGCCGGTACTTCTTCCGGGCACGCA AAGACTGTGAGAGGCTCTCGCGGGCAGGCAGGGTTACGGTCCTGTAGCCA TCAACCCCCAGGCAGCAAACCACCGAACCCCATGCATGGTTAAGATCCTC GCAGTATGGGAGCGCACTCGAAACAGCTCCTAGCGGTGCACGAATCTACG TACGTGAAAGCTGCCACGAAGAGCCGACCGGAAAAAGGGGAATGGCATCT CTCTTCTGTCGGTGGTTGTTGCGAAGCGTGTCGTCTTGTTTGGGTGTCTT GAGCGCCCATGGGATGTGTGGTCCAGTAGTGGATTCATTGCGCGGCACAG CTACGCATGATCGTTTTTTTTTGTGGCTTGTGAGGGGTTTTTGCCGACAC AACCGGAGAATGTGGTCGATATGTTGGTAGTACCCAACCTCCTGCCACCA TTCGGCGAGGACAAAAGACGGCGATCGTGTTACGTTTTACAGACGCGCAA TACCTGGACCGTGAGCAGGCAGGATCGGTGAGGGGCACATGAGCGGAGCG AGAGGGATGGAGTTGACTCCGTTGCGTTGCGCCATGGGTGTGACCGGTCG CTCAGCGGGGCCTGCTACCGCTTTGTGAAGCTGGGAGTAACAGGAGCTGA GCGGACCTCGTCTCTCGGCCAACCGCTACTCTCGGGTCGTAGGGTCCCTG TTGTTGGTGAAATCTCAGCGTGTTCACTTGCGTGATAAAGAAAAGGAAAC AGGAAGTGAAGCAGACTAAACGAGAAGACTCGTTACAATCAAAGGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1430:24395..26791-

>mRNA_H-canaliculatus_F_contig1430.3373.1 ID=mRNA_H-canaliculatus_F_contig1430.3373.1|Name=mRNA_H-canaliculatus_F_contig1430.3373.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1008bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1430:24395..26791- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCTTTGTGTACCTGCTGGTGGCTGTGTGTTTCGATTTCGACTGGAC
GGCCATCGTGGTCCGCCATGCCGTTCCCGTGATCATCATGAACTACTGGC
TCGTGATGGTCACCTATCTTCAGCACCACGAGTCTGACACCGAGATGGCC
TTTGTGTACCTGCTGGTGGCTGTGTGTTTCGATTTCGACTGGACGGCCAT
CGTGGTCCGCCATGCCGTTCCCGTGATCATCATGAACTACTGGCTCGTGA
TGGTCACCTATCTTCAGCACCACGAGTCTGACACCGAGACCTTTGACGAC
GCCGACTTTCACTTCGCAACGGCGGCCATGGAGACTGTGGACAGAAAGTA
CGGCTGGGGCATCGACGACGCCCACCACAACATCACCGACGGCCACGTCG
CTCACCACCTTTTTTTCACGAAGATCCCCCACTACAACCTCAAAAAGGCC
ACGGCGGCGATCAGACCGACACTGGAGAAGCTCGGCGTATACCGACCTTT
GACGACGCCGACTTTCACTTCGCAACGGCGGCCATGGAGACTGTGGACAG
AAAGTACGGCTGGGGCATCGACGACGCCCACCACAACATCACCGACGGCC
ACGTCGCTCACCACCTTTTTTTCACGAAGATCCCCCACTACAACCTCAAA
AAGGCCACGGCGGCGATCAGACCGACACTGGAGAAGCTCGGCGTATACCG
GTACCGTAACAACCCCAACTTCTTGTGGGTCTTCGTGCGTGACAACTACA
AGCTAGGATTCCACACTCACTCGAAGGCGCACGACCACAGGGCAAAGATG
CACTACCTCGACGCTTCCCGGACACCGGCGTTCAGCAACAAAAAGGCGAT
CTAGGTACCGTAACAACCCCAACTTCTTGTGGGTCTTCGTGCGTGACAAC
TACAAGCTAGGATTCCACACTCACTCGAAGGCGCACGACCACAGGGCAAA
GATGCACTACCTCGACGCTTCCCGGACACCGGCGTTCAGCAACAAAAAGG
CGATCTAG
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