mRNA_H-canaliculatus_F_contig14296.3368.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14296.3368.1
Unique NamemRNA_H-canaliculatus_F_contig14296.3368.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14296.3368.1 vs. uniprot
Match: Q9SMD8_9PHAE (Glycolate oxidase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q9SMD8_9PHAE)

HSP 1 Score: 324 bits (830), Expect = 8.130e-111
Identity = 158/168 (94.05%), Postives = 164/168 (97.62%), Query Frame = 1 
Query:   10 GLAAYVASLIDRTLDWNDIKWVRSICGSMKIVVKGVMTAEDASEAVRQGVDGIWISNHGARQLDTTPATIEVLPEVVSAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVKKVLKLLNDELIMALQLTGCTRVSAATRSMVTHQTSYYSKL 513
            GLAAYVASLIDRTLDWNDIKW+R+ICGSMKIVVKGVMTAEDASEAVRQGVDGIWISNHGARQLDTTPATIEVLPEVV AVSGRCE+YLDGGICRGTDVFKA+ALGAKAVFIGRPVLWGL HSGEEGV KVLKLLNDELIMALQLTGCTR+SAATR+MVTHQ SYYSKL
Sbjct:   72 GLAAYVASLIDRTLDWNDIKWLRTICGSMKIVVKGVMTAEDASEAVRQGVDGIWISNHGARQLDTTPATIEVLPEVVQAVSGRCEVYLDGGICRGTDVFKAIALGAKAVFIGRPVLWGLGHSGEEGVSKVLKLLNDELIMALQLTGCTRISAATRAMVTHQISYYSKL 239
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14296.3368.1 vs. uniprot
Match: D8LDI6_ECTSI (Glycolate Oxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDI6_ECTSI)

HSP 1 Score: 323 bits (828), Expect = 2.890e-108
Identity = 157/168 (93.45%), Postives = 167/168 (99.40%), Query Frame = 1 
Query:   10 GLAAYVASLIDRTLDWNDIKWVRSICGSMKIVVKGVMTAEDASEAVRQGVDGIWISNHGARQLDTTPATIEVLPEVVSAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVKKVLKLLNDELIMALQLTGCTRVSAATRSMVTHQTSYYSKL 513
            GLAAYVASLIDRTLDWNDIKW+R+ICGSMKIVVKGVMTAEDA+E+VRQGVDGIW+SNHGARQLDTTPATIEVLPEVV+AVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGV KVLKLL+DEL+MALQLTGCTRVS+A+RSMVTHQTSYYSKL
Sbjct:  227 GLAAYVASLIDRTLDWNDIKWLRTICGSMKIVVKGVMTAEDAAESVRQGVDGIWVSNHGARQLDTTPATIEVLPEVVAAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVSKVLKLLHDELVMALQLTGCTRVSSASRSMVTHQTSYYSKL 394
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14296.3368.1 vs. uniprot
Match: W7UBQ6_9STRA (Peroxisomal glycolate oxidase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UBQ6_9STRA)

HSP 1 Score: 252 bits (644), Expect = 1.800e-80
Identity = 121/168 (72.02%), Postives = 144/168 (85.71%), Query Frame = 1 
Query:   10 GLAAYVASLIDRTLDWNDIKWVRSICGSMKIVVKGVMTAEDASEAVRQGVDGIWISNHGARQLDTTPATIEVLPEVVSAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVKKVLKLLNDELIMALQLTGCTRVSAATRSMVTHQTSYYSKL 513
            GLAAYVASLIDRTL W D++W+RSIC ++ IVVKGVMT EDA  A++ GVD IW+SNHGARQLDT  +TIE+LP++V AV+GRCE+YLDGG+CRGTD FKALALGA+AVFIGRPVLWGLAHSGE+GV +VL+LL  E  MA+QLTGCT++S   RSMVTH  SY SK+
Sbjct:  224 GLAAYVASLIDRTLQWKDVQWLRSIC-NLPIVVKGVMTPEDALVAMQCGVDAIWVSNHGARQLDTVASTIELLPDIVKAVNGRCEVYLDGGVCRGTDAFKALALGARAVFIGRPVLWGLAHSGEDGVYQVLELLKKEFEMAMQLTGCTKLSDIQRSMVTHVVSYQSKI 390
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14296.3368.1 vs. uniprot
Match: A0A836CMB2_9STRA (Glycolate oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB2_9STRA)

HSP 1 Score: 251 bits (641), Expect = 6.250e-80
Identity = 121/166 (72.89%), Postives = 143/166 (86.14%), Query Frame = 1 
Query:   10 GLAAYVASLIDRTLDWNDIKWVRSICGSMKIVVKGVMTAEDASEAVRQGVDGIWISNHGARQLDTTPATIEVLPEVVSAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVKKVLKLLNDELIMALQLTGCTRVSAATRSMVTHQTSYYS 507
            GL+AYVASLIDRTL W+DI+W+RSI   + IVVKGVMTAEDA EA+R GVD IW+SNHGARQLDT  +TIE LPEVV+AV+G+ E+YLDGG+ RGTDVFKALA+GA+AVFIGRPVLWGLAHSGE+GV  VL+L+N+EL MALQL GCT V    +SMV HQT+YY+
Sbjct:  229 GLSAYVASLIDRTLSWDDIRWLRSIT-KLAIVVKGVMTAEDAREALRYGVDAIWVSNHGARQLDTVSSTIEALPEVVAAVAGKVEVYLDGGVTRGTDVFKALAMGARAVFIGRPVLWGLAHSGEDGVAAVLRLMNEELTMALQLAGCTSVDEIQKSMVVHQTAYYT 393
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14296.3368.1 vs. uniprot
Match: A0A7S2V919_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V919_9STRA)

HSP 1 Score: 240 bits (612), Expect = 2.580e-76
Identity = 119/164 (72.56%), Postives = 134/164 (81.71%), Query Frame = 1 
Query:   10 GLAAYVASLIDRTLDWNDIKWVRSICGSMKIVVKGVMTAEDASEAVRQGVDGIWISNHGARQLDTTPATIEVLPEVVSAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVKKVLKLLNDELIMALQLTGCTRVSAATRSMVTHQTSY 501
            GLAAYVASLIDRTL+W DI+W+RS+  S+KIVVKGV TAEDA  AV   VDGIW+SNHGARQLDT  ATIE+LPEVV AV+G CE+Y+DGGI RGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGV   L LL +E  MA+QLTGC +V    R+ V H + Y
Sbjct:  172 GLAAYVASLIDRTLNWEDIQWLRSVT-SLKIVVKGVQTAEDAKVAVENKVDGIWVSNHGARQLDTVAATIEMLPEVVRAVNGACEVYVDGGILRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVTNALTLLQNEFTMAMQLTGCVKVDDINRAHVCHASEY 334
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14296.3368.1 vs. uniprot
Match: A0A7R9UGG8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGG8_9STRA)

HSP 1 Score: 233 bits (593), Expect = 9.610e-73
Identity = 113/168 (67.26%), Postives = 134/168 (79.76%), Query Frame = 1 
Query:   10 GLAAYVASLIDRTLDWNDIKWVRSICGSMKIVVKGVMTAEDASEAVRQGVDGIWISNHGARQLDTTPATIEVLPEVVSAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVKKVLKLLNDELIMALQLTGCTRVSAATRSMVTHQTSYYSKL 513
            GLA+Y ASLIDRTL W D++W+R+   S+KIVVKGV TAEDAS AVR+GVD IWISNHGARQLDTTPAT E++PE+++AV GRCE+Y+DGGI RG D  KA+ALG +AVFIGRPVLWGLAHSG +GV+ VL LL  EL MA+ L G   V    R MVTH T Y+S+L
Sbjct:  227 GLASYCASLIDRTLTWEDLRWLRANT-SLKIVVKGVSTAEDASVAVREGVDAIWISNHGARQLDTTPATCEMIPEIIAAVGGRCEVYVDGGITRGADALKAVALGCRAVFIGRPVLWGLAHSGSDGVEHVLDLLKAELEMAMMLCGAVTVKDIKREMVTHNTKYFSRL 393
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14296.3368.1 vs. uniprot
Match: A0A7S1UI71_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UI71_9STRA)

HSP 1 Score: 232 bits (592), Expect = 1.400e-72
Identity = 113/168 (67.26%), Postives = 134/168 (79.76%), Query Frame = 1 
Query:   10 GLAAYVASLIDRTLDWNDIKWVRSICGSMKIVVKGVMTAEDASEAVRQGVDGIWISNHGARQLDTTPATIEVLPEVVSAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVKKVLKLLNDELIMALQLTGCTRVSAATRSMVTHQTSYYSKL 513
            GLA+Y ASLIDR+L W D++W+R+   S+KIVVKGV TAEDA+ AVR+GVD IWISNHGARQLDTTPAT E++PEVV+AV GRCE+Y+DGGI RG D  KA+ALG  AVF+GRPVLWGLAHSG+ GV+KVL LL  E  MA+ L GC  V    R MVTH T +YS+L
Sbjct:  228 GLASYCASLIDRSLTWEDLRWLRANT-SLKIVVKGVATAEDAAIAVREGVDAIWISNHGARQLDTTPATCEMIPEVVAAVGGRCEVYVDGGITRGADALKAVALGCTAVFVGRPVLWGLAHSGQAGVEKVLDLLKAEFEMAMMLCGCVTVDDIKREMVTHATKFYSRL 394
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14296.3368.1 vs. uniprot
Match: D7FMI7_ECTSI (Glycolate Oxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMI7_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 1.040e-71
Identity = 108/171 (63.16%), Postives = 133/171 (77.78%), Query Frame = 1 
Query:    1 MSQGLAAYVASLIDRTLDWNDIKWVRSICGSMKIVVKGVMTAEDASEAVRQGVDGIWISNHGARQLDTTPATIEVLPEVVSAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVKKVLKLLNDELIMALQLTGCTRVSAATRSMVTHQTSYYSKL 513
            M  G A+       ++L+W+D+ W+R+ICG MKIVVK VMT E A EA+  GVD +W+SNHG RQLDT PATIE+LPEVV AV GRCEI++DGGI RGTDV KALALGA AVFIGRPV+WGLAHSGE GV  V+ LLN+EL+ A++L GC ++    RSMV HQ+SY++KL
Sbjct:  234 MDLGQASDARPEAGKSLNWDDVHWLRTICGDMKIVVKSVMTREAAEEALAHGVDAVWVSNHGGRQLDTVPATIEILPEVVQAVRGRCEIFVDGGIRRGTDVLKALALGASAVFIGRPVIWGLAHSGEHGVTDVINLLNEELVQAMRLMGCKKLGDIERSMVAHQSSYHAKL 404
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14296.3368.1 vs. uniprot
Match: A0A7S2FX59_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FX59_9STRA)

HSP 1 Score: 229 bits (583), Expect = 1.150e-71
Identity = 111/166 (66.87%), Postives = 134/166 (80.72%), Query Frame = 1 
Query:   10 GLAAYVASLIDRTLDWNDIKWVRSICGSMKIVVKGVMTAEDASEAVRQGVDGIWISNHGARQLDTTPATIEVLPEVVSAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVKKVLKLLNDELIMALQLTGCTRVSAATRSMVTHQTSYYS 507
            GLA YVASLID+TL+W+DI+W+R +  +MKIVVKGVM+AEDA  A + GVDGI +SNHGARQLDT PATIE+LPEVV  V+GRCE+YLDGG+ RG D FKA+A+GAKAV IGR  +WGL HSGEEGV  VL LL+DEL MAL+L GC  ++     MVTHQ+ YY+
Sbjct:  189 GLAKYVASLIDKTLNWDDIQWLRKVT-TMKIVVKGVMSAEDAEVACQNGVDGILVSNHGARQLDTVPATIEILPEVVKQVAGRCEVYLDGGVSRGLDAFKAIAMGAKAVLIGRAYIWGLVHSGEEGVSNVLGLLHDELEMALRLCGCNCLADVRPEMVTHQSHYYT 353
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14296.3368.1 vs. uniprot
Match: A0A7S4KCV1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KCV1_9STRA)

HSP 1 Score: 229 bits (584), Expect = 2.500e-71
Identity = 114/168 (67.86%), Postives = 136/168 (80.95%), Query Frame = 1 
Query:   10 GLAAYVASLIDRTLDWNDIKWVRSICGSMKIVVKGVMTAEDASEAVRQGVDGIWISNHGARQLDTTPATIEVLPEVVSAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVKKVLKLLNDELIMALQLTGCTRVSAATRSMVTHQTSYYSKL 513
            GLA+YVASLIDR+L W+DI W+R+I   + IVVKG+MTAEDA EAV+  VD IW+SNHGARQLDT  +TIE+LP +   V+GRCEIY+DGGI RGTD+FKALALGA+AVFIGRPVLW LAHSGEEGVK V+ LL DE  +AL L+GCT +S   + MVTH  S YS+L
Sbjct:  233 GLASYVASLIDRSLQWDDIHWLRTIT-KLPIVVKGIMTAEDAEEAVKCKVDAIWVSNHGARQLDTVASTIELLPSIAKQVNGRCEIYVDGGIYRGTDIFKALALGARAVFIGRPVLWSLAHSGEEGVKHVIGLLKDEFELALSLSGCTSLSDIQQEMVTH-VSQYSRL 398
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14296.3368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q9SMD8_9PHAE8.130e-11194.05Glycolate oxidase (Fragment) n=1 Tax=Laminaria dig... [more]
D8LDI6_ECTSI2.890e-10893.45Glycolate Oxidase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
W7UBQ6_9STRA1.800e-8072.02Peroxisomal glycolate oxidase n=2 Tax=Monodopsidac... [more]
A0A836CMB2_9STRA6.250e-8072.89Glycolate oxidase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A7S2V919_9STRA2.580e-7672.56Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9UGG8_9STRA9.610e-7367.26Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1UI71_9STRA1.400e-7267.26Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
D7FMI7_ECTSI1.040e-7163.16Glycolate Oxidase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A7S2FX59_9STRA1.150e-7166.87Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4KCV1_9STRA2.500e-7167.86Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14296contigH-canaliculatus_F_contig14296:676..2633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.8
Seed ortholog evalue6e-59
Seed eggNOG ortholog2880.D7FMI7
Preferred nameGOX
KEGG rclassRC00042
KEGG koko:K11517,ko:K13344
KEGG TC3.A.20.1
KEGG ReactionR00475
KEGG Pathwayko00630,ko01100,ko01110,ko01120,ko01130,ko01200,ko04146,map00630,map01100,map01110,map01120,map01130,map01200,map04146
KEGG ModuleM00532
GOsGO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0003674,GO:0003824,GO:0003973,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005777,GO:0005829,GO:0005840,GO:0005911,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008891,GO:0009058,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009725,GO:0009735,GO:0009853,GO:0009987,GO:0010033,GO:0010109,GO:0010204,GO:0016020,GO:0016032,GO:0016491,GO:0016614,GO:0016899,GO:0016999,GO:0017000,GO:0017144,GO:0019048,GO:0019222,GO:0022626,GO:0023052,GO:0030054,GO:0031323,GO:0031347,GO:0031349,GO:0032991,GO:0035821,GO:0042221,GO:0042579,GO:0042742,GO:0042743,GO:0043094,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044003,GO:0044237,GO:0044249,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0048046,GO:0048518,GO:0048583,GO:0048584,GO:0050665,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051188,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051817,GO:0055044,GO:0055114,GO:0065007,GO:0072593,GO:0080134,GO:0098542,GO:1903409,GO:1990904
EggNOG free text desc.very-long-chain-(S)-2-hydroxy-acid oxidase activity
EggNOG OGsCOG1304@1,KOG0538@2759
Ec32 ortholog descriptionGlycolate Oxidase
Ec32 orthologEc-23_000460.1
EC1.1.3.15
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size516
Cds size516
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14296.3368.1prot_H-canaliculatus_F_contig14296.3368.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14296 676..2633 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929177.6574621-CDS-H-canaliculatus_F_contig14296:675..7741622929177.6574621-CDS-H-canaliculatus_F_contig14296:675..774Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14296 676..774 +
1696845707.8703105-CDS-H-canaliculatus_F_contig14296:675..7741696845707.8703105-CDS-H-canaliculatus_F_contig14296:675..774Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14296 676..774 +
1622929177.6773617-CDS-H-canaliculatus_F_contig14296:1192..13271622929177.6773617-CDS-H-canaliculatus_F_contig14296:1192..1327Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14296 1193..1327 +
1696845707.8879735-CDS-H-canaliculatus_F_contig14296:1192..13271696845707.8879735-CDS-H-canaliculatus_F_contig14296:1192..1327Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14296 1193..1327 +
1622929177.6920784-CDS-H-canaliculatus_F_contig14296:1821..19621622929177.6920784-CDS-H-canaliculatus_F_contig14296:1821..1962Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14296 1822..1962 +
1696845707.8973753-CDS-H-canaliculatus_F_contig14296:1821..19621696845707.8973753-CDS-H-canaliculatus_F_contig14296:1821..1962Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14296 1822..1962 +
1622929177.7109334-CDS-H-canaliculatus_F_contig14296:2492..26331622929177.7109334-CDS-H-canaliculatus_F_contig14296:2492..2633Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14296 2493..2633 +
1696845707.9057095-CDS-H-canaliculatus_F_contig14296:2492..26331696845707.9057095-CDS-H-canaliculatus_F_contig14296:2492..2633Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14296 2493..2633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14296.3368.1

>prot_H-canaliculatus_F_contig14296.3368.1 ID=prot_H-canaliculatus_F_contig14296.3368.1|Name=mRNA_H-canaliculatus_F_contig14296.3368.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=172bp
MSQGLAAYVASLIDRTLDWNDIKWVRSICGSMKIVVKGVMTAEDASEAVR
QGVDGIWISNHGARQLDTTPATIEVLPEVVSAVSGRCEIYLDGGICRGTD
VFKALALGAKAVFIGRPVLWGLAHSGEEGVKKVLKLLNDELIMALQLTGC
TRVSAATRSMVTHQTSYYSKL*
back to top

mRNA from alignment at H-canaliculatus_F_contig14296:676..2633+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14296.3368.1 ID=mRNA_H-canaliculatus_F_contig14296.3368.1|Name=mRNA_H-canaliculatus_F_contig14296.3368.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1958bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14296:676..2633+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCTCAGGGACTCGCCGCATATGTAGCGAGCCTGATCGACAGGACCCT
GGACTGGAACGATATCAAGTGGGTCCGCAGCATCTGCGGCAGCATGAAGG
TGCGGCGGGTTGGGTATCATGGGCCTGCGCATGGTTGCGCACACACCAAC
TAGCACCATTTCGTCCGCGTGCGGCTTTTCCGCCAGGGCTTGCGTGTGAC
CACGCGCCTTTTACGGAGCAGTTGTCGTTGTCCACGGTGCTAGACTTAGC
CTTGCGACACCCCTGTTGATGTTCCACACCGTAATGTCGAGAATCCAGAC
CGCTCGCCCTTCTCCCTTTGTTCTTGAACGAGATTCGCGGGTTGTGGGCA
GCCCCTCGGGCGTATTTTTCGCAGGCGTTGCAGTACTTGATCGCGTACAG
ATATAAATTTATACCGGTGTCGCTTTCGAGGTAGCGCGTACCTCACTCCC
CTTTCGCTGTCGGTCGAAGAACGCATCCTGACCGCCCAACCCAATCCTGC
CTGCTTTGTTCTTTCAGATTGTGGTGAAGGGAGTCATGACCGCGGAAGAC
GCGTCGGAGGCGGTTCGACAGGGCGTGGACGGCATCTGGATCTCCAACCA
CGGCGCTCGCCAGCTGGACACCACCCCGGCCACGATCGAGGTTCTCCCCG
AGGTTCGTTGTGGTTCGTTGCTGTGCTGTTCTCGCGCGTTAATTCTGCCG
TTGGTTTTTGTTGGTTTGCCTATTGTCGTCGTCGTCGTCGTCGTCGTTGT
TGTTGTTGTTGTATTGGCGATCTCGAACTGCGGGGTCCACCGATTGTTTC
GTTATTACGGTTTTACCCATGATCGACGCTCGATTCTTGGCGCGGCATGA
CACGGTTCACAAGATTGGCATTGAAGGGCGCAACGGAGCAAACCATCAAT
TATCAAACAAAACCGAGAAGTATTGCGCGCTCAAATACGGAGGCAATCGA
GCTCGATCTTTCCCAGCTCTTCCACCCCGGCACCGCTCTCTTACATCCTA
TGCCTGGTAGATCTAATTGCATGGCAAAACCACAAAAACTGAAACACATC
ATAAAAGCTTAAGCTCCACCAAGTGCGTACACGAATAGATCCCAACTTCC
CTTCGGATCGGCGCCGCTCGACGTAAATGCCTCTCGTGGCAACCAGGTGG
TGTCGGCAGTGAGCGGCCGTTGCGAGATCTACCTCGACGGAGGCATCTGC
CGCGGCACGGACGTGTTCAAGGCCCTCGCTCTGGGTGCCAAGGCGGTATT
CATCGGCCGGCCTGTGCTTTGGGGCCTTGCGCACAGCGTGAGTGCCCGTC
GCGGATCGATCCTGTTCGTTGGTGGCGGTGGTGTTGGTGGTGCTGATGCG
TTGTGGTGAATGATGTCGGTGGTGGTGCGACGGGGGTTGTAGTGTTGTGG
TTGTTGTTGTGGCTGTCCGGCGCGGCGGAGGACGTGAGCAACGCCTGCAG
ATGAAGTAACCAAAACGTGTGGATGTTGTGGCGGCTTTATCACGTCGTCT
CCGTGGTTGCTGCTCTGAACCGGTCTTCTGGCGTTCGCAAGGTCGTGAAC
CAATCTTCTGACGTTCGTACGGTCGTTGTGTGATACACCATTATCTGGGG
CAACCACCCACCATTCGGCAGCACCGCACGCAGGTAGCCATATCGGCGTA
AAAGCATCATGCATCATCGAGACTGCCATGGCGACGGCGTACCAGCGAGA
CTGAGCGGTCCGAGGTGTCCCCCCGGTGACCTCCAACCACCTCAACGTTG
TCAACCAACCCTTCGAACGCTCCGTTCTTTCCCCTGTATCAACTTTTCCC
CCCTTTTTTTTTCCCAGGGCGAGGAGGGTGTCAAGAAGGTTCTCAAGCTC
TTGAACGACGAGCTGATCATGGCCCTGCAGCTAACGGGCTGCACGCGCGT
CAGTGCCGCCACTCGCTCGATGGTGACCCACCAGACGTCGTACTACTCCA
AGCTCTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14296:676..2633+

>mRNA_H-canaliculatus_F_contig14296.3368.1 ID=mRNA_H-canaliculatus_F_contig14296.3368.1|Name=mRNA_H-canaliculatus_F_contig14296.3368.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1032bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14296:676..2633+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCTCAGGGACTCGCCGCATATGTAGCGAGCCTGATCGACAGGACCCT
GGACTGGAACGATATCAAGTGGGTCCGCAGCATCTGCGGCAGCATGAAGA
TGTCTCAGGGACTCGCCGCATATGTAGCGAGCCTGATCGACAGGACCCTG
GACTGGAACGATATCAAGTGGGTCCGCAGCATCTGCGGCAGCATGAAGAT
TGTGGTGAAGGGAGTCATGACCGCGGAAGACGCGTCGGAGGCGGTTCGAC
AGGGCGTGGACGGCATCTGGATCTCCAACCACGGCGCTCGCCAGCTGGAC
ACCACCCCGGCCACGATCGAGGTTCTCCCCGAGATTGTGGTGAAGGGAGT
CATGACCGCGGAAGACGCGTCGGAGGCGGTTCGACAGGGCGTGGACGGCA
TCTGGATCTCCAACCACGGCGCTCGCCAGCTGGACACCACCCCGGCCACG
ATCGAGGTTCTCCCCGAGGTGGTGTCGGCAGTGAGCGGCCGTTGCGAGAT
CTACCTCGACGGAGGCATCTGCCGCGGCACGGACGTGTTCAAGGCCCTCG
CTCTGGGTGCCAAGGCGGTATTCATCGGCCGGCCTGTGCTTTGGGGCCTT
GCGCACAGCGTGGTGTCGGCAGTGAGCGGCCGTTGCGAGATCTACCTCGA
CGGAGGCATCTGCCGCGGCACGGACGTGTTCAAGGCCCTCGCTCTGGGTG
CCAAGGCGGTATTCATCGGCCGGCCTGTGCTTTGGGGCCTTGCGCACAGC
GGCGAGGAGGGTGTCAAGAAGGTTCTCAAGCTCTTGAACGACGAGCTGAT
CATGGCCCTGCAGCTAACGGGCTGCACGCGCGTCAGTGCCGCCACTCGCT
CGATGGTGACCCACCAGACGTCGTACTACTCCAAGCTCTGAGGCGAGGAG
GGTGTCAAGAAGGTTCTCAAGCTCTTGAACGACGAGCTGATCATGGCCCT
GCAGCTAACGGGCTGCACGCGCGTCAGTGCCGCCACTCGCTCGATGGTGA
CCCACCAGACGTCGTACTACTCCAAGCTCTGA
back to top