mRNA_H-canaliculatus_F_contig14285.3364.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14285.3364.1
Unique NamemRNA_H-canaliculatus_F_contig14285.3364.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14285.3364.1 vs. uniprot
Match: D8LN24_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN24_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 1.300e-47
Identity = 94/142 (66.20%), Postives = 103/142 (72.54%), Query Frame = 1 
Query:    1 SLSRFYDDDGPSEWGGTDLTGAAMGGSILGPEFPLRKGLVGGGGPSSRFSAGPRSQASFAANSVAASGRSVQSSVTLGGLGXXXXXXXXXXXXXXXXXXXXXXXXXVASSRSMFPPRGGISPPYALGADGXXXXXASPLRMI 426
            S +++Y+DDG S+WGGTDLTGAAMGGSILGPEFPLRKG+VGGGGPSSRFSAGPRSQASFAANSVAASGRSVQSSVT+GG                            ASSRS FPPRGGISPPY+LG  G     ASPLR +
Sbjct:  148 SSAKYYEDDGTSDWGGTDLTGAAMGGSILGPEFPLRKGMVGGGGPSSRFSAGPRSQASFAANSVAASGRSVQSSVTIGG----------------------------ASSRSNFPPRGGISPPYSLGGAGGGG--ASPLRGL 259
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BLAST of mRNA_H-canaliculatus_F_contig14285.3364.1 vs. uniprot
Match: A0A6H5KYX6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYX6_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 4.030e-41
Identity = 83/125 (66.40%), Postives = 91/125 (72.80%), Query Frame = 1 
Query:    7 SRFYDDDGPSEWGGTDLTGAAMGGSILGPEFPLRKGLVGGGGPSSRFSAGPRSQASFAANSVAASGRSVQSSVTLGGLGXXXXXXXXXXXXXXXXXXXXXXXXXVASSRSMFPPRGGISPPYALG 381
            +++Y+D   S+WGGTDLTGAAMGGSILGPEFPLRKG+VGGGGPSSRFSAGPRSQASFAANSVAASGRS+QSSVT GG                            ASSRS FPPRGG SPPY+LG
Sbjct:  184 AKYYEDGDMSDWGGTDLTGAAMGGSILGPEFPLRKGMVGGGGPSSRFSAGPRSQASFAANSVAASGRSIQSSVTTGG----------------------------ASSRSNFPPRGGTSPPYSLG 280
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14285.3364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN24_ECTSI1.300e-4766.20Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KYX6_9PHAE4.030e-4166.40Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14285contigH-canaliculatus_F_contig14285:808..1929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_002190.1
Exons2
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929176.9334059-CDS-H-canaliculatus_F_contig14285:807..9751622929176.9334059-CDS-H-canaliculatus_F_contig14285:807..975Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14285 808..975 +
1696845707.4876966-CDS-H-canaliculatus_F_contig14285:807..9751696845707.4876966-CDS-H-canaliculatus_F_contig14285:807..975Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14285 808..975 +
1622929176.947107-CDS-H-canaliculatus_F_contig14285:1653..19291622929176.947107-CDS-H-canaliculatus_F_contig14285:1653..1929Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14285 1654..1929 +
1696845707.4962435-CDS-H-canaliculatus_F_contig14285:1653..19291696845707.4962435-CDS-H-canaliculatus_F_contig14285:1653..1929Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14285 1654..1929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14285.3364.1prot_H-canaliculatus_F_contig14285.3364.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14285 808..1929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14285.3364.1

>prot_H-canaliculatus_F_contig14285.3364.1 ID=prot_H-canaliculatus_F_contig14285.3364.1|Name=mRNA_H-canaliculatus_F_contig14285.3364.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=148bp
SLSRFYDDDGPSEWGGTDLTGAAMGGSILGPEFPLRKGLVGGGGPSSRFS
AGPRSQASFAANSVAASGRSVQSSVTLGGLGGGGVGGGGDSNGGGAGGGG
GGGAASVASSRSMFPPRGGISPPYALGADGGPGGGASPLRMIRGAGGG
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mRNA from alignment at H-canaliculatus_F_contig14285:808..1929+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14285.3364.1 ID=mRNA_H-canaliculatus_F_contig14285.3364.1|Name=mRNA_H-canaliculatus_F_contig14285.3364.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1122bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14285:808..1929+ (Hapterophycus canaliculatus Oshoro5f female)
TCATTGTCAAGGTTCTACGACGACGACGGACCGTCCGAGTGGGGAGGGAC
CGACCTGACCGGGGCGGCCATGGGCGGCAGCATCTTGGGGCCGGAGTTCC
CTCTGCGGAAGGGGCTGGTGGGGGGGGGCGGTCCGTCCTCCCGCTTCTCT
GCGGGCCCCCGCTCGCAGGTGACTTATTCTTGTCCTTGTTGCTTGTGCTG
TTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTTGCTGTTGTTCTTGCTGTT
GCTGTTGCTGTCGTTCTTGTTGTTGCTGTTGTTAGTCTAGAGACTCTAGG
GGTGGTCGGAGCTACGGCTTAGATCTTCCACGTATGTGTGGCGCGAAGGA
CGCACCAGAGCTCACCTCTCTACGTGAGAGGCAAACAGGGTTCAACGTGT
GTAAGTGAGCAGATGGGCTCTCCAGCTGCTATCGTGAAGCAGAATGTTCT
GGGAACGTTCTGTGTCTGCTCTTATCTGTGGTAACACCCCGTGGGGATCT
CCGACGGGCCATCTCTTGTGGTTGCGATCTACGATATATTCTATGGTGAC
ATTCACACTGTTGTGCTTTCTGTTGTTGTTGCTGTCGTTCTTGTTTGTTC
TTGTTCTTGGTGCTCGTGCTGGTGCTGGTGCTGGTACTGTTTTTGTTTCT
GTTTGTCTGTCACTGCGCTACACCGCCGCGCACCTGTCCACCGGTTAGCT
CGCCCACAAGCCCTTTCACGTTCGCTTCCATTCAACCCGCCCGCGAGGAT
CATGGCATTGTAAGATGGCCAACCCCCCCCTCCCCCCCCCCTCCATGTTT
CGGCGCTCCATTCATCCCTCCCACCCGTCTTCCTTTTCTCTCTCAGGCAT
CTTTCGCGGCCAACTCGGTGGCCGCCTCCGGCCGCTCTGTGCAGAGCTCG
GTGACGCTCGGCGGCCTCGGCGGCGGCGGAGTCGGCGGCGGCGGGGACAG
CAACGGAGGTGGAGCGGGAGGCGGAGGGGGAGGTGGCGCGGCCTCCGTAG
CCTCGTCACGGTCGATGTTCCCCCCTCGGGGGGGCATCAGCCCCCCCTAC
GCCCTGGGCGCCGACGGGGGCCCGGGGGGTGGCGCTTCCCCCCTGAGGAT
GATCCGCGGGGCCGGGGGGGGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14285:808..1929+

>mRNA_H-canaliculatus_F_contig14285.3364.1 ID=mRNA_H-canaliculatus_F_contig14285.3364.1|Name=mRNA_H-canaliculatus_F_contig14285.3364.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=888bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14285:808..1929+ (Hapterophycus canaliculatus Oshoro5f female)
TCATTGTCAAGGTTCTACGACGACGACGGACCGTCCGAGTGGGGAGGGAC
CGACCTGACCGGGGCGGCCATGGGCGGCAGCATCTTGGGGCCGGAGTTCC
CTCTGCGGAAGGGGCTGGTGGGGGGGGGCGGTCCGTCCTCCCGCTTCTCT
GCGGGCCCCCGCTCGCAGTCATTGTCAAGGTTCTACGACGACGACGGACC
GTCCGAGTGGGGAGGGACCGACCTGACCGGGGCGGCCATGGGCGGCAGCA
TCTTGGGGCCGGAGTTCCCTCTGCGGAAGGGGCTGGTGGGGGGGGGCGGT
CCGTCCTCCCGCTTCTCTGCGGGCCCCCGCTCGCAGGCATCTTTCGCGGC
CAACTCGGTGGCCGCCTCCGGCCGCTCTGTGCAGAGCTCGGTGACGCTCG
GCGGCCTCGGCGGCGGCGGAGTCGGCGGCGGCGGGGACAGCAACGGAGGT
GGAGCGGGAGGCGGAGGGGGAGGTGGCGCGGCCTCCGTAGCCTCGTCACG
GTCGATGTTCCCCCCTCGGGGGGGCATCAGCCCCCCCTACGCCCTGGGCG
CCGACGGGGGCCCGGGGGGTGGCGCTTCCCCCCTGAGGATGATCCGCGGG
GCCGGGGGGGGAGCATCTTTCGCGGCCAACTCGGTGGCCGCCTCCGGCCG
CTCTGTGCAGAGCTCGGTGACGCTCGGCGGCCTCGGCGGCGGCGGAGTCG
GCGGCGGCGGGGACAGCAACGGAGGTGGAGCGGGAGGCGGAGGGGGAGGT
GGCGCGGCCTCCGTAGCCTCGTCACGGTCGATGTTCCCCCCTCGGGGGGG
CATCAGCCCCCCCTACGCCCTGGGCGCCGACGGGGGCCCGGGGGGTGGCG
CTTCCCCCCTGAGGATGATCCGCGGGGCCGGGGGGGGA
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