mRNA_H-canaliculatus_F_contig1427.3356.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1427.3356.1
Unique NamemRNA_H-canaliculatus_F_contig1427.3356.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1427.3356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1427contigH-canaliculatus_F_contig1427:17841..18731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size891
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1427.3356.1prot_H-canaliculatus_F_contig1427.3356.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1427 17879..18325 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929175.396243-UTR-H-canaliculatus_F_contig1427:17840..178781622929175.396243-UTR-H-canaliculatus_F_contig1427:17840..17878Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1427 17841..17878 +
1696845706.9203656-UTR-H-canaliculatus_F_contig1427:17840..178781696845706.9203656-UTR-H-canaliculatus_F_contig1427:17840..17878Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1427 17841..17878 +
1622929175.4678216-UTR-H-canaliculatus_F_contig1427:18325..187311622929175.4678216-UTR-H-canaliculatus_F_contig1427:18325..18731Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1427 18326..18731 +
1696845706.941612-UTR-H-canaliculatus_F_contig1427:18325..187311696845706.941612-UTR-H-canaliculatus_F_contig1427:18325..18731Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1427 18326..18731 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929175.4480205-CDS-H-canaliculatus_F_contig1427:17878..183251622929175.4480205-CDS-H-canaliculatus_F_contig1427:17878..18325Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1427 17879..18325 +
1696845706.9329462-CDS-H-canaliculatus_F_contig1427:17878..183251696845706.9329462-CDS-H-canaliculatus_F_contig1427:17878..18325Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1427 17879..18325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1427.3356.1

>prot_H-canaliculatus_F_contig1427.3356.1 ID=prot_H-canaliculatus_F_contig1427.3356.1|Name=mRNA_H-canaliculatus_F_contig1427.3356.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=149bp
MPVKTWFRCVQVYTGGDSQDWTTALLRLGRKDSATMSVGEMTVEGGRYDM
QDVTTQIYKLSSLSARRAVEATFRFMKNTHRGKQSVVLVGTVDAFRSTFC
FLCKSNHPKKVFASRAVNLVAPFDIPFWGCAQLVGCEEVRHHEKSVPV*
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mRNA from alignment at H-canaliculatus_F_contig1427:17841..18731+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1427.3356.1 ID=mRNA_H-canaliculatus_F_contig1427.3356.1|Name=mRNA_H-canaliculatus_F_contig1427.3356.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=891bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1427:17841..18731+ (Hapterophycus canaliculatus Oshoro5f female)
AGGAGTTGGCCTATTTGTGTCGAAGACGAGCCCGACACATGCCGGTTAAA
ACGTGGTTCCGTTGTGTTCAGGTTTACACTGGCGGGGATAGCCAAGATTG
GACAACGGCGCTGTTGAGATTGGGGAGGAAGGATTCGGCAACGATGTCAG
TTGGGGAGATGACGGTAGAAGGGGGACGGTACGACATGCAGGATGTAACA
ACGCAGATCTACAAGCTGTCAAGTTTGTCAGCACGACGAGCCGTAGAAGC
GACGTTCCGCTTTATGAAAAATACACATCGGGGCAAACAGTCCGTTGTGT
TGGTAGGTACCGTTGATGCCTTCCGATCTACCTTCTGCTTTCTGTGCAAG
AGCAATCATCCGAAGAAAGTGTTTGCGTCACGTGCTGTCAATCTTGTTGC
TCCATTTGACATACCGTTTTGGGGCTGTGCACAATTGGTGGGCTGTGAGG
AGGTTCGACATCATGAGAAATCTGTTCCAGTCTAGGATACACCAAAAACG
CCTCAACTACGCCTCGATTGTACAAACACTAGAAACCACGGCAACCCCAC
CGCCGTATTCCTGAGTACATGGCCAGGTTACGTCATTGGTGGGTTTGCAT
GCTCCGTGGGGCGCCTCAAGCGTAATGTGAAAAAAACACCCGAATAAAAA
CGCCCAGGAATGGAGTGGCAACAGAAGCAGAGGAAAAGACGATTACGCGG
GGATGATACCATTTGTTTTGCCCCACAAAACCTAAACGTCGGGAGGGGCG
ATCACCGAGAAGGTGACGGTATAAACACGCGCAGTCGGTCACATAGAACT
TTTCGATTAGCAGATTGAAGGGCCCCCATCCCATTTGGAGCATGATGCGC
CGAACTTTTGTCCAACATGGTCAATTTGTGATATATATTCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1427:17841..18731+

>mRNA_H-canaliculatus_F_contig1427.3356.1 ID=mRNA_H-canaliculatus_F_contig1427.3356.1|Name=mRNA_H-canaliculatus_F_contig1427.3356.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=894bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1427:17841..18731+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCGGTTAAAACGTGGTTCCGTTGTGTTCAGGTTTACACTGGCGGGGA
TAGCCAAGATTGGACAACGGCGCTGTTGAGATTGGGGAGGAAGGATTCGG
CAACGATGTCAGTTGGGGAGATGACGGTAGAAGGGGGACGGTACGACATG
CAGGATGTAACAACGCAGATCTACAAGCTGTCAAGTTTGTCAGCACGACG
AGCCGTAGAAGCGACGTTCCGCTTTATGAAAAATACACATCGGGGCAAAC
AGTCCGTTGTGTTGGTAGGTACCGTTGATGCCTTCCGATCTACCTTCTGC
TTTCTGTGCAAGAGCAATCATCCGAAGAAAGTGTTTGCGTCACGTGCTGT
CAATCTTGTTGCTCCATTTGACATACCGTTTTGGGGCTGTGCACAATTGG
TGGGCTGTGAGGAGGTTCGACATCATGAGAAATCTGTTCCAGTCTAGATG
CCGGTTAAAACGTGGTTCCGTTGTGTTCAGGTTTACACTGGCGGGGATAG
CCAAGATTGGACAACGGCGCTGTTGAGATTGGGGAGGAAGGATTCGGCAA
CGATGTCAGTTGGGGAGATGACGGTAGAAGGGGGACGGTACGACATGCAG
GATGTAACAACGCAGATCTACAAGCTGTCAAGTTTGTCAGCACGACGAGC
CGTAGAAGCGACGTTCCGCTTTATGAAAAATACACATCGGGGCAAACAGT
CCGTTGTGTTGGTAGGTACCGTTGATGCCTTCCGATCTACCTTCTGCTTT
CTGTGCAAGAGCAATCATCCGAAGAAAGTGTTTGCGTCACGTGCTGTCAA
TCTTGTTGCTCCATTTGACATACCGTTTTGGGGCTGTGCACAATTGGTGG
GCTGTGAGGAGGTTCGACATCATGAGAAATCTGTTCCAGTCTAG
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